 |
|
EBI DbfetchID AY080811; SV 1; linear; mRNA; STD; PLN; 2702 BP. XX AC AY080811; XX DT 15-MAR-2002 (Rel. 71, Created) DT 20-SEP-2002 (Rel. 73, Last updated, Version 3) XX DE Arabidopsis thaliana putative alpha-N-acetylglucosaminidase (At5g13690) DE mRNA, complete cds. XX KW FLI_CDNA. XX OS Arabidopsis thaliana (thale cress) OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; OC eurosids II; Brassicales; Brassicaceae; Arabidopsis. XX RN [1] RP 1-2702 RA Yamada K., Liu S.X., Sakano H., Pham P.K., Banh J., Chung M.K., RA Goldsmith A.D., Lee J.M., Quach H.L., Toriumi M., Yu G., Bowser L., RA Carninci P., Chen H., Cheuk R., Hayashizaki Y., Ishida J., Jones T., RA Kamiya A., Karlin-Neumann G., Kawai J., Kim C., Lam B., Lin J., Miranda M., RA Narusaka M., Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P., RA Southwick A., Shinozaki K., Davis R.W., Ecker J.R., Theologis A.; RT "Arabidopsis Full Length cDNA Clones"; RL Unpublished. XX RN [2] RP 1-2702 RA Yamada K., Banh J., Chan M.M., Chang C.H., Chang E., Dale J.M., Deng J.M., RA Goldsmith A.D., Lee J.M., Onodera C.S., Quach H.L., Tang C.C., Toriumi M., RA Wu H.C., Yamamura Y., Yu G., Bowser L., Carninci P., Chen H., Cheuk R., RA Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G., RA Kawai J., Kim C., Lam B., Lin J., Meyers M.C., Miranda M., Narusaka M., RA Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P., RA Southwick A., Shinozaki K., Davis R.W., Ecker J.R., Theologis A.; RT ; RL Submitted (19-FEB-2002) to the EMBL/GenBank/DDBJ databases. RL Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA XX CC RIKEN Genomic Sciences Center (GSC) members carried out the CC collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN CC Arabidopsis Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J., CC Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J., CC Hayashizaki,Y. and Shinozaki,K. CC The Salk, Stanford, PGEC (SSP) Consortium members carried out the CC sequencing and annotation of the RAFL cDNAs: Yamada,K., Banh,J., CC Chan,M.M., Chang,C.H., Chang,E., Dale,J.M., Deng,J.M., CC Goldsmith,A.D., Lee,J.M., Onodera,C.S., Quach,H.L., Tang,C.C., CC Toriumi,M., Wu,H.C., Yamamura,Y., Yu,G., Bowser,L., Chen,H., CC Cheuk,R., Jones,T., Karlin-Neumann,G., Kim,C., Lam,B., Lin,J., CC Meyers,M.C., Miranda,M., Nguyen,M., Palm,C.J., Shinn,P., CC Southwick,A., Davis,R.W., Ecker,J.R. and Theologis,A. CC Yamada,K. (SSP/PGEC) and Seki,M. (RIKEN GSC) contributed equally to CC this work. Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP/PGEC) CC contributed equally to this work as PIs. CC Annotation is based on the January 2002 version of the Arabidopsis CC genome submitted to GenBank. XX FH Key Location/Qualifiers FH FT source 1..2702 FT /organism="Arabidopsis thaliana" FT /chromosome="5" FT /mol_type="mRNA" FT /clone="RAFL06-71-O12 (R11491)" FT /note="This clone is in a modified pBluescript vector FT (Lambda ZAP) as a XhoI/SstI insert. ecotype: Columbia" FT /db_xref="taxon:3702" FT 5'UTR 1..54 FT /gene="At5g13690" FT CDS 55..2475 FT /codon_start=1 FT /gene="At5g13690" FT /product="putative alpha-N-acetylglucosaminidase" FT /db_xref="GOA:Q9FNA3" FT /db_xref="InterPro:IPR007781" FT /db_xref="UniProtKB/TrEMBL:Q9FNA3" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAL87291.1" FT /translation="MHSIKLVLLVLLIISFHSQTVSKHHPTIDGLLDRLDSLLPTSSVQ FT ESAAKGLLQRLLPTHSQSFELRIISKDACGGTSCFVIENYDGPGRIGPEILIKGTTGVE FT IASGLHWYLKYKCNAHVSWDKTGGIQVASVPQPGHLPRIDSKRIFIRRPVPWNYYQNVV FT TSSYSYVWWGWERWEREIDWMALQGINLPLAFTGQEAIWQKVFKRFNISKEDLDDYFGG FT PAFLAWARMGNLHAWGGPLSKNWLDDQLLLQKQILSRMLKFGMTPVLPSFSGNVPSALR FT KIYPEANITRLDNWNTVDGDSRWCCTYLLNPSDPLFIEIGEAFIKQQTEEYGEITNIYN FT CDTFNENTPPTSEPEYISSLGAAVYKAMSKGNKNAVWLMQGWLFSSDSKFWKPPQLKAL FT LHSVPFGKMIVLDLYAEVKPIWNKSAQFYGTPYIWCMLHNFGGNIEMYGALDSISSGPV FT DARVSKNSTMVGVGMCMEGIEQNPVVYELTSEMAFRDEKVDVQKWLKSYARRRYMKENH FT QIEAAWEILYHTVYNCTDGIADHNTDFIVKLPDWDPSSSVQDDLKQKDSYMISTGPYET FT KRRVLFQDKTADLPKAHLWYSTKEVIQALKLFLEAGDDLSRSLTYRYDMVDLTRQVLSK FT LANQVYTEAVTAFVKKDIGSLGQLSEKFLELIKDMDVLLASDDNCLLGTWLESAKKLAK FT NGDERKQYEWNARTQVTMWYDSNDVNQSKLHDYANKFWSGLLEDYYLPRARLYFNEMLK FT SLRDKKIFKVEKWRREWIMMSHKWQQSSSEVYPVKAKGDALAISRHLLSKYFP" FT 3'UTR 2476..2702 FT /gene="At5g13690" XX SQ Sequence 2702 BP; 828 A; 494 C; 607 G; 773 T; 0 other; agttttctat gcctttcctt gctgattctc tcactagtga ggaaaagcat catcatgcat 60 tccatcaaat tggttttgtt ggttttgttg ataatttctt ttcactctca aactgtgtca 120 aaacatcatc caactattga tggtctgctt gaccgtttgg attctttatt accaacttct 180 tctgtacaag aatcagcagc aaagggttta ttgcagagac tgcttcccac ccattctcag 240 agctttgagc tcagaattat ctcaaaggat gcttgtggtg gtaccagctg ctttgtaatt 300 gaaaactatg atggcccggg acgaattgga cctgaaattc tgattaaagg cacaactgga 360 gttgagattg cttctgggct ccattggtat ttgaagtata aatgtaatgc tcatgtttct 420 tgggacaaaa ctggtggaat tcaggttgcc tctgttccac aacctggaca tctacctcgt 480 atagattcta aacgcatctt tatccggcgt cctgtccctt ggaactatta ccaaaatgtt 540 gttacatcta gctattcata tgtttggtgg ggatgggaga gatgggagag agagattgac 600 tggatggcat tgcaaggaat taacctgcct ctagcattca ctggacaaga agctatttgg 660 caaaaggttt tcaagaggtt caatatcagc aaagaagatc tggatgatta ttttggtgga 720 ccagcgtttc ttgcttgggc tcgcatggga aatcttcacg cttggggtgg tccattatcg 780 aaaaactggt tagatgacca gttgcttttg cagaaacaga tactttctcg gatgttgaag 840 tttggcatga ctccagtact cccatcattc tcaggcaatg ttccatcagc tttgagaaag 900 atatatcctg aggcaaatat aactcgactt gataactgga acacggtgga tggtgattct 960 cgctggtgct gcacttacct tctgaatccc tctgaccctc tcttcattga aattggagag 1020 gcttttatta aacaacaaac tgaagaatat ggagagatta caaacatata taactgtgat 1080 acattcaatg agaatactcc tcccacaagt gaacctgaat atatatcttc actaggagct 1140 gcagtgtaca aagctatgtc aaaaggaaac aagaatgctg tatggttaat gcaaggttgg 1200 ctttttagtt cagactccaa attctggaag ccgcctcagt tgaaagcact cttacattca 1260 gttccctttg gcaaaatgat agttcttgac ctatatgctg aagtcaaacc gatatggaac 1320 aagtccgccc aattttatgg aactccttat atctggtgca tgcttcacaa ttttggaggc 1380 aacattgaaa tgtatggtgc tcttgattca atttcttcag gaccagttga tgctcgtgtt 1440 agcaaaaatt caaccatggt cggtgtagga atgtgcatgg aaggaataga gcagaacccg 1500 gtggtttacg aactaacttc tgaaatggca tttcgagatg agaaagttga tgtacagaaa 1560 tggttgaaga gctatgcacg cagaagatac atgaaagaaa atcatcaaat cgaggccgct 1620 tgggagattc tgtatcacac tgtctacaat tgcactgatg gaatcgcaga ccataacaca 1680 gatttcatag tcaagcttcc ggactgggat ccatctagtt ctgtacaaga cgacttgaaa 1740 caaaaagatt catatatgat ctccactggc ccatatgaaa caaaaagaag agtcttgttt 1800 caagataaga ccgctgattt gcctaaggcc catttatggt attctacaaa ggaggtgatc 1860 caagctctca aacttttcct ggaagctggg gatgatctgt caaggagctt aacatatagg 1920 tatgacatgg ttgatttgac gcgtcaagtt ttatcgaagc tagcaaacca ggtgtacacc 1980 gaagcagtga cagcttttgt aaagaaagat atcggaagct taggacaatt gagtgagaag 2040 tttctggagc ttataaagga catggacgtt ctacttgctt cggatgataa ttgccttctg 2100 gggacatggc tggagagtgc aaagaagttg gccaaaaacg gtgatgaaag gaaacagtac 2160 gagtggaacg cgagaacgca agtgacaatg tggtatgact cgaacgatgt gaaccaaagc 2220 aagcttcatg attacgcaaa caagttctgg agtgggttac ttgaagacta ctacttaccc 2280 cgagcgaggt tgtattttaa tgaaatgctg aaaagtttaa gagataagaa gatattcaag 2340 gtagagaaat ggcgaagaga atggataatg atgtcacaca aatggcaaca aagttcatca 2400 gaggtctatc cagttaaggc aaaaggagac gcgttagcta tttcaaggca tctgttgagt 2460 aaatacttcc catgagttta ctcaagagta gctcaaacga ataaataaaa taaacaaaag 2520 ggttgggttt ctactttcta gcttgtgcct gagataaatt taacatttgt gtaaatttga 2580 gagttattag gcttctgatg tgttagtgta agagactcgg tgaaggccaa taaaggttgt 2640 aacaacaaac tctgcttcat ctcttccaac aaagatttac ttgtgtaaaa aaaaaaaaaa 2700 aa 2702 // |
|