EBI Dbfetch

ID   AY080672; SV 1; linear; mRNA; STD; PLN; 1901 BP.
XX
AC   AY080672;
XX
DT   13-MAR-2002 (Rel. 71, Created)
DT   20-SEP-2002 (Rel. 73, Last updated, Version 3)
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DE   Arabidopsis thaliana unknown protein (At4g16745) mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1901
RA   Yamada K., Liu S.X., Sakano H., Pham P.K., Banh J., Chung M.K.,
RA   Goldsmith A.D., Lee J.M., Quach H.L., Toriumi M., Yu G., Bowser L.,
RA   Carninci P., Chen H., Cheuk R., Hayashizaki Y., Ishida J., Jones T.,
RA   Kamiya A., Karlin-Neumann G., Kawai J., Kim C., Lam B., Lin J., Miranda M.,
RA   Narusaka M., Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P.,
RA   Southwick A., Shinozaki K., Davis R.W., Ecker J.R., Theologis A.;
RT   "Arabidopsis Full Length cDNA Clones";
RL   Unpublished.
XX
RN   [2]
RP   1-1901
RA   Yamada K., Banh J., Chan M.M., Chang C.H., Chang E., Dale J.M., Deng J.M.,
RA   Goldsmith A.D., Lee J.M., Onodera C.S., Quach H.L., Tang C.C., Toriumi M.,
RA   Wu H.C., Yamamura Y., Yu G., Bowser L., Carninci P., Chen H., Cheuk R.,
RA   Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G.,
RA   Kawai J., Kim C., Lam B., Lin J., Meyers M.C., Miranda M., Narusaka M.,
RA   Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P.,
RA   Southwick A., Shinozaki K., Davis R.W., Ecker J.R., Theologis A.;
RT   ;
RL   Submitted (19-FEB-2002) to the EMBL/GenBank/DDBJ databases.
RL   Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA
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CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Yamada,K., Banh,J.,
CC   Chan,M.M., Chang,C.H., Chang,E., Dale,J.M., Deng,J.M.,
CC   Goldsmith,A.D., Lee,J.M., Onodera,C.S., Quach,H.L., Tang,C.C.,
CC   Toriumi,M., Wu,H.C., Yamamura,Y., Yu,G., Bowser,L., Chen,H.,
CC   Cheuk,R., Jones,T., Karlin-Neumann,G., Kim,C., Lam,B., Lin,J.,
CC   Meyers,M.C., Miranda,M., Nguyen,M., Palm,C.J., Shinn,P.,
CC   Southwick,A., Davis,R.W., Ecker,J.R. and Theologis,A.
CC   Yamada,K. (SSP/PGEC) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP/PGEC)
CC   contributed equally to this work as PIs.
CC   Annotation is based on the January 2002 version of the Arabidopsis
CC   genome submitted to GenBank.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1901
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="4"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL09-59-O14 (R19315)"
FT                   /note="This clone is in a modified pBluescript vector
FT                   (FLC-1) as a BamHI/XhoI insert. ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   5'UTR           1..199
FT                   /gene="At4g16745"
FT   CDS             200..1828
FT                   /codon_start=1
FT                   /gene="At4g16745"
FT                   /product="unknown protein"
FT                   /db_xref="GOA:Q8RXU2"
FT                   /db_xref="InterPro:IPR004263"
FT                   /db_xref="UniProtKB/TrEMBL:Q8RXU2"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT                   /protein_id="AAL86348.1"
FT                   /translation="MVNIKSPLRLFIEESIKELIRGFRRQRIKWRNAFLLGSIMTTIVV
FT                   LLHTPTFSVFSDEEETESSSSSPIYLNGSLHLNIHIVSSEAKVENFHTLRTRTPIVQLN
FT                   ASEASEAVLSRKRRKRKKRKKTKDDLILTDPPPAPRHVLSSSERRALSLPPKKALTYAK
FT                   LEIQRAPEVINDTDLFAPLFRNLSVFKRSYELMELILKVYIYPDGDKPIFHEPHLNGIY
FT                   ASEGWFMKLMESNKQFVTKNPERAHLFYMPYSVKQLQKSIFVPGSHNIKPLSIFLRDYV
FT                   NMLSIKYPFWNRTHGSDHFLVACHDWGPYTVNEHPELKRNAIKALCNADLSDGIFVPGK
FT                   DVSLPETSIRNAGRPLRNIGNGNRVSQRPILAFFAGNLHGRVRPKLLKHWRNKDEDMKI
FT                   YGPLPHNVARKMTYVQHMKSSKYCLCPMGYEVNSPRIVEAIYYECVPVVIADNFMLPFS
FT                   DVLDWSAFSVVVPEKEIPRLKEILLEIPMRRYLKMQSNVKMVQRHFLWSPKPRKYDVFH
FT                   MILHSIWFNLLNQNQTSFDDHIPDS"
FT   3'UTR           1829..1901
FT                   /gene="At4g16745"
XX
SQ   Sequence 1901 BP; 590 A; 395 C; 372 G; 544 T; 0 other;
     attcttctcc gtctgccaaa atccccactt cacgaatcgc aaaagatcaa ggtttattga        60
     tctattgcga aattagggtt tgtgaattcg aatcggagat taataataga ttttgtgatg       120
     gagtgttcat cacgcataga agaatcttga tttcgatctc gatgaaatta ggaatcgagg       180
     gattttattt ataattgaga tggtgaatat taaaagccct ttacggctat tcatagagga       240
     gtcgattaag gaattaatta ggggtttcag gagacaaagg atcaaatgga gaaatgcgtt       300
     tcttcttggt tctataatga ctaccattgt tgttctgctt catacaccaa cgttttcagt       360
     cttctctgat gaagaagaaa ccgagtcttc ttcttcttcg cctatttact tgaatggttc       420
     tctgcatttg aatatccata ttgttagtag tgaagcaaaa gttgaaaatt ttcatactct       480
     tagaacaaga actcctattg tgcaattgaa tgcttctgaa gcaagtgaag ctgttctttc       540
     gagaaaaagg cgaaaaagga agaaaagaaa gaagacaaaa gatgatctga ttctcactga       600
     tcctccacca gcaccacgac atgttctatc ttcctcagag agacgtgctc tttccttgcc       660
     accgaagaaa gctcttactt atgcaaaact ggagattcag cgtgccccgg aggtcataaa       720
     tgatacagat ctgtttgccc cattgtttcg aaatctctct gttttcaaaa ggagctatga       780
     gcttatggaa ctaatactaa aggtctacat atatcctgac ggagacaaac ccatcttcca       840
     cgaaccgcat ttaaatggta tatatgcttc agaaggttgg tttatgaagc taatggagtc       900
     aaacaaacag tttgtcacaa agaaccctga gagggctcac ttgttctaca tgccatatag       960
     tgtgaaacag cttcagaaaa gtatctttgt tcctggatca cataacatca aacctttatc      1020
     gatctttctt agagactacg tcaacatgct ctccatcaaa taccccttct ggaaccgcac      1080
     tcatgggtca gatcatttcc ttgtcgcttg ccacgattgg ggtccttaca cagtgaacga      1140
     gcacccagag ctaaaacgaa acgctattaa agctctctgc aatgcagact tatcagatgg      1200
     aatcttcgtc ccggggaaag acgtttctct ccctgaaaca tccataagaa acgcaggtag      1260
     accactacgc aacataggaa acggaaacag agtttctcaa cgtcccatcc tcgctttctt      1320
     cgctggaaac ctccacggtc gtgtccgtcc aaagcttcta aaacactgga gaaacaaaga      1380
     cgaggacatg aaaatctacg gtccgcttcc acacaacgta gctaggaaaa tgacttacgt      1440
     acaacacatg aaatcaagca agtactgtct ttgtccaatg ggttacgaag tgaacagtcc      1500
     acgtatcgtt gaagctatat actatgaatg cgtccctgta gtgatcgctg ataacttcat      1560
     gttaccgttc agcgatgtgc tagattggtc agcgttctca gtggttgtac cggagaagga      1620
     gattccacgg ctgaaggaga tactattgga gattcctatg aggagatatt tgaagatgca      1680
     gagtaacgtg aagatggttc agagacattt cttgtggagc cctaaaccta gaaagtacga      1740
     tgtgtttcat atgatacttc actccatttg gtttaacctt ctcaatcaaa accaaacttc      1800
     ttttgatgat catattcccg attcctgaca tcatccttaa ttatgtctgt acattatata      1860
     tattaagaaa actatttcca ttgacaaaaa aaaaaaaaaa a                          1901
//