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EBI DbfetchID AY080589; SV 1; linear; mRNA; STD; PLN; 1752 BP. XX AC AY080589; XX DT 13-MAR-2002 (Rel. 71, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 4) XX DE Arabidopsis thaliana unknown protein (At3g48820) mRNA, complete cds. XX KW FLI_CDNA. XX OS Arabidopsis thaliana (thale cress) OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; OC eurosids II; Brassicales; Brassicaceae; Arabidopsis. XX RN [1] RP 1-1752 RA Yamada K., Liu S.X., Sakano H., Pham P.K., Banh J., Chung M.K., RA Goldsmith A.D., Lee J.M., Quach H.L., Toriumi M., Yu G., Bowser L., RA Carninci P., Chen H., Cheuk R., Hayashizaki Y., Ishida J., Jones T., RA Kamiya A., Karlin-Neumann G., Kawai J., Kim C., Lam B., Lin J., Miranda M., RA Narusaka M., Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P., RA Southwick A., Shinozaki K., Davis R.W., Ecker J.R., Theologis A.; RT "Arabidopsis Full Length cDNA Clones"; RL Unpublished. XX RN [2] RP 1-1752 RA Yamada K., Banh J., Chan M.M., Chang C.H., Chang E., Dale J.M., Deng J.M., RA Goldsmith A.D., Lee J.M., Onodera C.S., Quach H.L., Tang C.C., Toriumi M., RA Wu H.C., Yamamura Y., Yu G., Bowser L., Carninci P., Chen H., Cheuk R., RA Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G., RA Kawai J., Kim C., Lam B., Lin J., Meyers M.C., Miranda M., Narusaka M., RA Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P., RA Southwick A., Shinozaki K., Davis R.W., Ecker J.R., Theologis A.; RT ; RL Submitted (19-FEB-2002) to the EMBL/GenBank/DDBJ databases. RL Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA XX CC RIKEN Genomic Sciences Center (GSC) members carried out the CC collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN CC Arabidopsis Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J., CC Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J., CC Hayashizaki,Y. and Shinozaki,K. CC The Salk, Stanford, PGEC (SSP) Consortium members carried out the CC sequencing and annotation of the RAFL cDNAs: Yamada,K., Banh,J., CC Chan,M.M., Chang,C.H., Chang,E., Dale,J.M., Deng,J.M., CC Goldsmith,A.D., Lee,J.M., Onodera,C.S., Quach,H.L., Tang,C.C., CC Toriumi,M., Wu,H.C., Yamamura,Y., Yu,G., Bowser,L., Chen,H., CC Cheuk,R., Jones,T., Karlin-Neumann,G., Kim,C., Lam,B., Lin,J., CC Meyers,M.C., Miranda,M., Nguyen,M., Palm,C.J., Shinn,P., CC Southwick,A., Davis,R.W., Ecker,J.R. and Theologis,A. CC Yamada,K. (SSP/PGEC) and Seki,M. (RIKEN GSC) contributed equally to CC this work. Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP/PGEC) CC contributed equally to this work as PIs. CC Annotation is based on the January 2002 version of the Arabidopsis CC genome submitted to GenBank. XX FH Key Location/Qualifiers FH FT source 1..1752 FT /organism="Arabidopsis thaliana" FT /chromosome="3" FT /mol_type="mRNA" FT /clone="RAFL09-57-I16 (R19220)" FT /note="This clone is in a modified pBluescript vector FT (FLC-1) as a BamHI/XhoI insert. ecotype: Columbia" FT /db_xref="taxon:3702" FT 5'UTR 1..36 FT /gene="At3g48820" FT CDS 37..1359 FT /codon_start=1 FT /gene="At3g48820" FT /product="unknown protein" FT /db_xref="GOA:Q8RY00" FT /db_xref="InterPro:IPR001675" FT /db_xref="UniProtKB/TrEMBL:Q8RY00" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAL85966.1" FT /translation="MKLLHLIFLLALTTGISAVLIYIIGVSNLYESNRFTNEDLEALQS FT LQNGFQKCVSANGLGLQAAMGRDYCKVSINFPKDTVPKWKDPKSGELEGLSYEFDLCEA FT VATWEQVRNSSTILTKEYIDALPNGWEDYAWRRINKGIQLNRCQNKSLCIEKLSLVLPE FT TPPYFPRQFGRCAVIGNSGDLLKTKFGKEIDTYDTVLRENGAPIQNYKEYVGEKSTFRL FT LNRGSAKALDKVVELDEKKQEVLLVKTTIHDIMNKMIREVPIKNPVYLMLGASFGSAAK FT GTGLKALEFALSTCDSVDMYGFTVDPGYKEWTRYFSESRQGHTPLHGRAYYQMMECLGL FT IKIHSPMRADPNRVVKWVPSRSTIRSARIAAEKLLRRVGAGSADPLASCSIVKKRNKNK FT RPMVSHLRKPVSDHQKFVRSTSMYPVEHSPGHGQLCITPAD" FT misc_difference 822 FT /gene="At3g48820" FT /replace="c" FT /note="compared to genomic sequence" FT 3'UTR 1360..1752 FT /gene="At3g48820" XX SQ Sequence 1752 BP; 559 A; 334 C; 377 G; 482 T; 0 other; ggaaatcacg aagctgaagc ttctactggg gaatcgatga agctcttgca tctgatattc 60 ttattagctt tgactactgg aatctctgct gttctaatct acattatcgg cgtctctaat 120 ctctacgagt ctaatcgttt taccaatgaa gatttagagg cgttgcagtc tttgcagaac 180 ggattccaga agtgcgtaag tgcaaatggt ttgggactac aagctgctat gggtagagat 240 tattgcaaag tttctataaa cttccctaag gatactgtcc ccaaatggaa agatcccaag 300 tctggagagc ttgaaggatt gtcatatgag tttgacctgt gtgaagcagt agctacatgg 360 gaacaagtca ggaatagctc tacaatactc accaaggaat acattgatgc cttaccaaat 420 ggatgggagg attatgcatg gcgcagaatc aataaaggaa ttcaacttaa tcgttgccag 480 aataaatctt tatgcattga gaagctttca ttggtgcttc ctgaaacacc accatatttc 540 ccccggcagt ttgggcgatg tgctgttatt ggtaactctg gtgatctctt aaaaacaaag 600 ttcggaaagg agatagatac ttatgatacg gttctaagag aaaatggtgc tcctattcag 660 aactacaagg aatatgtggg agagaaaagt acattccgtc ttcttaatag agggtcagca 720 aaagcccttg acaaagtcgt ggagttggat gaaaaaaagc aagaggtcct gctcgtcaaa 780 acaacaatac atgatattat gaacaagatg attcgggaag ttccaataaa aaatcctgtg 840 tacttaatgc tcggtgcttc atttggctca gcagccaaag gaactgggct caaggctctt 900 gagtttgctc tctcgacgtg tgattcagtg gatatgtatg gattcacagt ggatccaggc 960 tataaagagt ggacaagata tttttcagaa tcccgacaag gacatactcc tttgcatgga 1020 agagcttact accagatgat ggaatgcttg ggtctcatta aaatacactc tcccatgaga 1080 gctgatccaa accgtgtcgt gaaatgggtg ccaagccgca gtacaattag atctgcaaga 1140 attgcagcag aaaagctctt aaggagagtt ggagcaggat ctgcagatcc attagcttca 1200 tgctccatag taaagaagag aaacaaaaac aagcgtccaa tggtctcaca cctcagaaaa 1260 cctgtgagcg accatcaaaa atttgtgaga agcacgagca tgtacccagt ggagcacagt 1320 ccaggacatg gtcagctttg cattacacca gctgactaag aaactgcata tctaggaatt 1380 gatttatcac catacacact aaagcacaaa acaggacgac gatacattcc ttcaaaaaca 1440 agtccctctg cttttgcgcc attgttagga gttgaagatc atcaaggtga cagttatatg 1500 cgtaatctct ctaggttagg tttaattctt ttgttatcta tttttccgga attttcttca 1560 ccagagatgt aggtaaaatc atagaggact gaaagagaac aaagctagaa attgattatg 1620 tctaatttta gtacataagc aaatgttatg ttctttgttc tcttttcttg cctcctctag 1680 tccatgtctt accttgtact agtcacaaaa ttatattaag cagaatagtg taaagcaaaa 1740 aaaaaaaaaa aa 1752 // |
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