 |
|
EBI DbfetchID AY074393; SV 1; linear; mRNA; STD; PLN; 2081 BP. XX AC AY074393; XX DT 29-JAN-2002 (Rel. 70, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 7) XX DE Arabidopsis thaliana putative beta-amylase (At3g23920) mRNA, complete cds. XX KW FLI_CDNA. XX OS Arabidopsis thaliana (thale cress) OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; OC eurosids II; Brassicales; Brassicaceae; Arabidopsis. XX RN [1] RP 1-2081 RA Yamada K., Liu S.X., Sakano H., Pham P.K., Banh J., Chung M.K., RA Goldsmith A.D., Lee J.M., Quach H.L., Toriumi M., Yu G., Bowser L., RA Carninci P., Chen H., Cheuk R., Hayashizaki Y., Ishida J., Jones T., RA Kamiya A., Karlin-Neumann G., Kawai J., Kim C., Lam B., Lin J., Miranda M., RA Narusaka M., Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P., RA Southwick A., Shinozaki K., Davis R.W., Ecker J.R., Theologis A.; RT "Arabidopsis Full Length cDNA Clones"; RL Unpublished. XX RN [2] RP 1-2081 RA Yamada K., Banh J., Chan M.M., Chang C.H., Chang E., Dale J.M., Deng J.M., RA Goldsmith A.D., Lee J.M., Onodera C.S., Quach H.L., Tang C.C., Toriumi M., RA Wu H.C., Yamamura Y., Yu G., Bowser L., Carninci P., Chen H., Cheuk R., RA Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G., RA Kawai J., Kim C., Lam B., Lin J., Meyers M.C., Miranda M., Narusaka M., RA Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P., RA Southwick A., Shinozaki K., Davis R.W., Ecker J.R., Theologis A.; RT ; RL Submitted (11-JAN-2002) to the EMBL/GenBank/DDBJ databases. RL Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA XX CC RIKEN Genomic Sciences Center (GSC) members carried out the CC collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN CC Arabidopsis Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J., CC Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J., CC Hayashizaki,Y. and Shinozaki,K. CC The Salk, Stanford, PGEC (SSP) Consortium members carried out the CC sequencing and annotation of the RAFL cDNAs: Yamada,K., Banh,J., CC Chan,M.M., Chang,C.H., Chang,E., Dale,J.M., Deng,J.M., CC Goldsmith,A.D., Lee,J.M., Onodera,C.S., Quach,H.L., Tang,C.C., CC Toriumi,M., Wu,H.C., Yamamura,Y., Yu,G., Bowser,L., Chen,H., CC Cheuk,R., Jones,T., Karlin-Neumann,G., Kim,C., Lam,B., Lin,J., CC Meyers,M.C., Miranda,M., Nguyen,M., Palm,C.J., Shinn,P., CC Southwick,A., Davis,R.W., Ecker,J.R. and Theologis,A. CC Yamada,K. (SSP/PGEC) and Seki,M. (RIKEN GSC) contributed equally to CC this work. Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP/PGEC) CC contributed equally to this work as PIs. CC Annotation is based on the January 2002 version of the Arabidopsis CC genome submitted to GenBank. XX FH Key Location/Qualifiers FH FT source 1..2081 FT /organism="Arabidopsis thaliana" FT /chromosome="3" FT /mol_type="mRNA" FT /clone="RAFL09-26-B06 (R18509)" FT /note="This clone is in a modified pBluescript vector FT (FLC-1) as a BamHI/XhoI insert. ecotype: Columbia" FT /db_xref="taxon:3702" FT 5'UTR 1..100 FT /gene="At3g23920" FT CDS 101..1828 FT /codon_start=1 FT /gene="At3g23920" FT /product="putative beta-amylase" FT /db_xref="GOA:Q9LIR6" FT /db_xref="HSSP:1B1Y" FT /db_xref="InterPro:IPR001371" FT /db_xref="InterPro:IPR001554" FT /db_xref="InterPro:IPR013781" FT /db_xref="InterPro:IPR017853" FT /db_xref="InterPro:IPR018238" FT /db_xref="UniProtKB/TrEMBL:Q9LIR6" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAL67089.1" FT /translation="MALNLSHQLGVLAGTPIKSGEMTDSSLLSISPPSARMMTPKAMNR FT NYKAHGTDPSPPMSPILGATRADLSVACKAFAVENGIGTIEEQRTYREGGIGGKKEGGG FT GVPVFVMMPLDSVTMGNTVNRRKAMKASLQALKSAGVEGIMIDVWWGLVEKESPGTYNW FT GGYNELLELAKKLGLKVQAVMSFHQCGGNVGDSVTIPLPQWVVEEVDKDPDLAYTDQWG FT RRNHEYISLGADTLPVLKGRTPVQCYADFMRAFRDNFKHLLGETIVEIQVGMGPAGELR FT YPSYPEQEGTWKFPGIGAFQCYDKYSLSSLKAAAETYGKPEWGSTGPTDAGHYNNWPED FT TQFFKKEGGGWNSEYGDFFLSWYSQMLLDHGERILSSAKSIFENMGVKISVKIAGIHWH FT YGTRSHAPELTAGYYNTRFRDGYLPIAQMLARHNAIFNFTCIEMRDHEQPQDALCAPEK FT LVNQVALATLAAEVPLAGENALPRYDDYAHEQILKASALNLDQNNEGEPREMCAFTYLR FT MNPELFQADNWGKFVAFVKKMGEGRDSHRCREEVEREAEHFVHVTQPLVQEAAVALTH" FT 3'UTR 1829..2081 FT /gene="At3g23920" FT misc_difference 1984 FT /gene="At3g23920" FT /note="not present in genomic sequence" FT misc_difference 2064 FT /gene="At3g23920" FT /replace="g" FT /note="compared to genomic sequence" XX SQ Sequence 2081 BP; 603 A; 406 C; 546 G; 526 T; 0 other; cacacaaaac ttccgatttc aaaaaaacaa tttgaaattt gtcaaaagga atattctgac 60 gatcgattct tgattcgttt tctcgcgtat agagagaaaa atggcgctta atttatcgca 120 tcagctagga gtactcgccg gaactccgat caaatccggt gaaatgacag attcatcgtt 180 gttatcaatt tcaccaccat cggcgagaat gatgacacct aaagcaatga atcgaaacta 240 caaggctcac ggaacagatc catcaccgcc gatgagtcca attttaggtg cgacacgtgc 300 ggatctgtcg gtggcgtgta aagctttcgc ggtggagaat ggaatcggga ccattgaaga 360 acagagaacg tatagagaag gagggattgg tggaaagaaa gaaggaggag gaggtgttcc 420 tgtgtttgtg atgatgccgc ttgatagtgt taccatgggg aacacggtga atcgaagaaa 480 ggcgatgaaa gcgagtttgc aagcgttgaa gagtgctggt gttgaaggga ttatgattga 540 tgtgtggtgg ggtttggttg agaaggaatc tcctggaact tataattggg gaggttataa 600 tgaattgctt gagctggcta agaagcttgg tcttaaggtt caagctgtta tgtcgtttca 660 tcagtgtggt ggcaacgttg gtgactctgt cactattcct ctgcctcagt gggttgttga 720 agaggttgac aaggatccag accttgcata cactgatcag tggggaagaa ggaaccatga 780 gtatatatca cttggcgctg atacactccc tgttctcaaa ggtagaacac ctgtgcaatg 840 ctatgcggat ttcatgcgtg cttttagaga caacttcaag catcttcttg gagagaccat 900 tgtggaaatc caagtgggaa tgggacctgc aggagagctg cgttaccctt cgtaccccga 960 gcaagaaggg acatggaagt tcccagggat tggagccttc cagtgctatg ataagtactc 1020 gttaagcagc ttgaaagcag cagctgagac ttatgggaag ccagagtggg gcagtactgg 1080 cccaaccgat gctggtcact acaataactg gccagaagac acccagttct tcaaaaaaga 1140 aggtggtggt tggaactcag agtatggaga tttcttcctc tcatggtact cccagatgct 1200 gttggatcac ggcgagcgga tcctatcctc agccaaatca atattcgaaa acatgggtgt 1260 caaaatatcg gtcaaaatcg ctggaatcca ctggcactac gggacccgct ctcacgcgcc 1320 tgagctcaca gcagggtact acaacacaag gttcagagac gggtacctcc cgatcgccca 1380 aatgttagcc agacacaatg ccatattcaa cttcacatgt atcgagatga gggatcacga 1440 acagcctcaa gacgcacttt gtgcaccaga gaagctagtt aaccaagttg ctctagccac 1500 tctagccgca gaagttcctc tagctggtga aaacgcattg cctaggtacg acgactatgc 1560 acacgagcag attctcaagg cctccgcgct gaaccttgat caaaacaatg agggagaacc 1620 tcgagagatg tgtgcattta cttacctaag gatgaatccg gagttgtttc aggcggataa 1680 ctggggaaaa ttcgtagcgt ttgtgaagaa aatgggtgaa gggagagact cacatagatg 1740 tcgggaagaa gttgagcgtg aggctgagca ttttgtgcac gttactcagc cgctggttca 1800 agaagctgca gtggctctca ctcactagag agatagattg tggcatggtt ctatggttta 1860 tgtttgtatg cgattataat gaaatggtta tatgacaatg ccaaaaaaga tgtttaggct 1920 tgttggagct tgtgtatgta ttgttagtaa aactgaaatg tatgccacag ctctggtttt 1980 ttttccggtc aggttgtggc atgctactac ttttaatata tgctaaaaga tgtacatgtt 2040 ctttaatgaa gccaaaataa ataacaaaaa aaaaaaaaaa a 2081 // |
|