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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY072357; SV 1; linear; mRNA; STD; PLN; 1100 BP.
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AC   AY072357;
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DT   22-JAN-2002 (Rel. 70, Created)
DT   16-APR-2005 (Rel. 83, Last updated, Version 2)
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DE   Arabidopsis thaliana putative endochitinase (At2g43610) mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1100
RA   Nguyen M., Karlin-Neumann G., Southwick A., Lam B., Miranda M., Palm C.J.,
RA   Bowser L., Jones T., Banh J., Carninci P., Chen H., Cheuk R., Chung M.K.,
RA   Hayashizaki Y., Ishida J., Kamiya A., Kawai J., Kim C., Lin J., Liu S.X.,
RA   Narusaka M., Pham P.K., Sakano H., Sakurai T., Satou M., Seki M., Shinn P.,
RA   Yamada K., Shinozaki K., Ecker J., Theologis A., Davis R.W.;
RT   ;
RL   Submitted (02-JAN-2002) to the EMBL/GenBank/DDBJ databases.
RL   DNA Sequencing and Technology Center, Stanford University, 855 California
RL   Avenue, Palo Alto, CA 94304, USA
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CC   e-mail for correspondence: arab@sequence.stanford.edu
CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis  Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Nguyen,M.,
CC   Southwick,A., Karlin-Neumann,G.,  Lam,B., Miranda,M., Palm,C.J.,
CC   Bowser,L., Jones,T., Banh,J., Chen,H., Cheuk,R., Chung,M.K.,
CC   Kim,C., Lin,J., Liu,S.X., Pham,P.K., Sakano,H., Shinn,P.,
CC   Yamada,K., Ecker,J., Theologis,A. and Davis,R.W.
CC   Nguyen,M, (SSP/Stanford) and Seki,M. (RIKEN GSC) contributed
CC   equally to this work.  Shinozaki,K. (RIKEN GSC) and Davis,R.W.
CC   (SSP/Stanford)  contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1100
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="2"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL11-09-D20"
FT                   /note="This clone is in pBluescript ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             41..886
FT                   /codon_start=1
FT                   /gene="At2g43610"
FT                   /product="putative endochitinase"
FT                   /db_xref="GOA:O22842"
FT                   /db_xref="HSSP:1CNS"
FT                   /db_xref="InterPro:IPR016283"
FT                   /db_xref="UniProtKB/TrEMBL:O22842"
FT                   /protein_id="AAL62349.1"
FT                   /translation="MATQNAILKKALIIFLFTLTIMTGTAFSQNCGTNGCKGNMCCSRW
FT                   GYCGTTKAYCGTGCQSGPCNSKPKPTPTPSGSGGLNAGPRGTIASVITPAFFNSIMSKV
FT                   GSGCPAKGFYTRQAFIAAAESFAAYKGTVAKREIAAMLAQFSHESGSFCYKEEIARGRY
FT                   CSPSTTYPCQPGKNYYGRGPIQITWNYNYGAAGKFLGLPLLKDPDMVARSPTVAFQCAM
FT                   WFWNKNVRPVLSQGFGATTRRINGGECNGGRPAAVQSRVNHYLDFCKKLGVTPGTNLSC
FT                   "
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SQ   Sequence 1100 BP; 311 A; 239 C; 262 G; 288 T; 0 other;
     acacaactct cccctcaaaa cattccatca aaggaaaaaa atggcgacac aaaatgcgat        60
     tctgaaaaaa gctctcatca ttttcctctt tactctaacc atcatgacag gaaccgcgtt       120
     ttcacaaaac tgtggtacaa acgggtgtaa aggcaacatg tgctgcagca ggtggggata       180
     ttgtggtacc acaaaagcct actgtggcac tgggtgccag agtggacctt gcaactctaa       240
     acctaaacct actccgactc caagcggtag tggcggtcta aatgctggtc ctcgtggtac       300
     catagcaagc gttatcacac cagcgttctt caacagcatc atgagtaaag tcggaagcgg       360
     ttgcccagcg aaagggtttt acactcgcca ggctttcatc gcagccgctg aatcgttcgc       420
     agcctacaaa ggaactgttg ctaagcgtga gattgccgcc atgttggctc agttctctca       480
     cgaatctgga agtttttgtt acaaagaaga aatagccaga ggaaggtact gctcaccaag       540
     cacaacatat ccttgtcaac ccggaaagaa ctactatggt cgcggtccga tccaaatcac       600
     atggaactac aactatggtg cagccggaaa gttccttgga cttcctctct tgaaggaccc       660
     agatatggtg gctcgtagcc caactgtggc tttccagtgt gccatgtggt tttggaacaa       720
     gaatgtgcgt ccggttttga gccaagggtt tggtgcaacc acgaggagga tcaacggtgg       780
     tgaatgtaat ggtgggcgtc cagctgcagt gcagagcagg gttaaccatt acttggactt       840
     ctgcaagaag cttggggtca ctcctggaac caatctctca tgttgaagac actactagtt       900
     tatgagggtt tttcattaat gtcgtctggt taagaatttc gtatcgaata ataaagtgaa       960
     gtcgaaaata ctagaactta taaaatttgt aagagattag aagttatatt gtgtggttga      1020
     tgtctcttaa ggtaactata ttgtgtgttg tttgtatccg ctcgctagca taagtaataa      1080
     agatggaagt attatccaat                                                  1100
//
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