EBI Dbfetch

ID   AY069879; SV 1; linear; mRNA; STD; PLN; 1927 BP.
XX
AC   AY069879;
XX
DT   28-DEC-2001 (Rel. 70, Created)
DT   16-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE   Arabidopsis thaliana AT5g18670/T1A4_50 mRNA, complete cds.
XX
KW   FLI_CDNA.
XX
OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1927
RA   Cheuk R., Chen H., Kim C.J., Meyers M.C., Banh J., Bowser L., Carninci P.,
RA   Chang E., Dale J.M., Goldsmith A.D., Hayashizaki Y., Ishida J., Jones T.,
RA   Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lee J.M., Lin J.,
RA   Miranda M., Narusaka M., Nguyen M., Onodera C.S., Palm C.J., Quach H.L.,
RA   Sakurai T., Satou M., Seki M., Southwick A., Tang C.C., Toriumi M.,
RA   Wu H.C., Yamada K., Yamamura Y., Yu G., Yu S., Shinozaki K., Davis R.W.,
RA   Theologis A., Ecker J.R.;
RT   "Arabidopsis cDNA clones";
RL   Unpublished.
XX
RN   [2]
RP   1-1927
RA   Cheuk R., Chen H., Kim C.J., Meyers M.C., Banh J., Bowser L., Carninci P.,
RA   Chang E., Dale J.M., Goldsmith A.D., Hayashizaki Y., Ishida J., Jones T.,
RA   Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lee J.M., Lin J.,
RA   Miranda M., Narusaka M., Nguyen M., Onodera C.S., Palm C.J., Quach H.L.,
RA   Sakurai T., Satou M., Seki M., Southwick A., Tang C.C., Toriumi M.,
RA   Wu H.C., Yamada K., Yamamura Y., Yu G., Yu S., Shinozaki K., Davis R.W.,
RA   Theologis A., Ecker J.R.;
RT   ;
RL   Submitted (10-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL   Salk Institute Genomic Analysis Laboratory (SIGnAL), Plant Biology
RL   Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey
RL   Pines Road, La Jolla, CA 92037, USA
XX
CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA') :  Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P.,  Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Cheuk,R., Chen,H.,
CC   Kim,C.J., Meyers,M.C., Shinn,P., Banh,J. Bowser,L., Dale,J.M.,
CC   Goldsmith,A.D., Jiang,P.X., Jones,T., Karlin-Neumann,G., Lam,B.,
CC   Lee,J.M., Lin,J., Liu,S.X., Miranda,M., Nguyen,M., Onodera,C.S.,
CC   Palm,C.J., Pham,P.K., Quach,H.L., Southwick,A., Tang,C.C.,
CC   Toriumi,M., Yamada,K., Yamamura, Y., Yu,G., Yu,S., Davis,R.W.,
CC   Theologis,A., and Ecker,J.R.
CC   Cheuk,R. (SSP/Salk) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Ecker,J.R. (SSP/Salk)
CC   contributed equally to this work as PIs.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1927
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="5"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL09-10-C12(R21304)"
FT                   /note="ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   5'UTR           1..183
FT   CDS             184..1794
FT                   /codon_start=1
FT                   /product="AT5g18670/T1A4_50"
FT                   /note="beta-amylase-like proten"
FT                   /db_xref="GOA:Q8VYW2"
FT                   /db_xref="HSSP:1FA2"
FT                   /db_xref="InterPro:IPR013781"
FT                   /db_xref="UniProtKB/TrEMBL:Q8VYW2"
FT                   /protein_id="AAL47434.1"
FT                   /translation="MEVSVIGNPQARICRAELAYRELGFRFGSDVISGESRNRVSFCNQ
FT                   SSKWKEIAIRCSSRSVKCEAIVSDDASPFLKSTPKSKSLESVKLFVGLPLDTVSDCNNV
FT                   NHLKAITAGLKALKLLGVEGIELPIFWGVVEKEAAGKYEWSGYLAVAEIVKKVGLKLHA
FT                   SLSFHGSKQTEIGLPDWVAKIGDAEPGIYFTDRYGQQYKDCLSFAVDDVPVLDGKTPME
FT                   VYRGFCESFKSAFADYMGNTITGITLGLGPDGELKYPSHQHNAKLSGAGEFQCYDKHML
FT                   SALKGYAESTGNPLWGLGGPHDAPAYDQQPNSSSFFSDGGSWESQYGDFFLSWYSSLLT
FT                   SHADRVLSVASSAFSGIGVPLCGKLPLLHQWHKLRSHPSELTAGFYSSNGQDRYEAIAE
FT                   IFAKNSCRMIIPGMDLSDEHQSPESLSSPESLLGHIKTSCKKQGVVVSGQNSSTPVPGG
FT                   FERIVENLKDENVGIDLFTYQRMGALFFSPEHFHAFTVFVRNLSQFELSSDDQASEAEV
FT                   EAETASIGSGTGAPSLQTA"
FT   3'UTR           1795..1927
XX
SQ   Sequence 1927 BP; 516 A; 413 C; 419 G; 579 T; 0 other;
     atatataaac caaatccata atcctcacca tatccacaat cctcaagcta tctcctttgt        60
     gtccataatc gaaacgcttt ttgcgattta tcctaatctt ttttctatct tctgctacaa       120
     atttggttct tttttggttg aatttggata aaatcataat ctcctcttca attttcttgt       180
     gaaatggaag tttcagtgat tggaaatcct caagcgagga tctgcagagc agaattagct       240
     tacagagagc ttggatttag atttggctct gatgtaatct ccggtgaatc gagaaatagg       300
     gttagtttct gcaaccaaag ctctaaatgg aaagagatcg cgatacgttg ctcttcgaga       360
     tctgtcaaat gtgaagccat cgtctccgat gacgcttctc cgtttctcaa atccactcca       420
     aaatctaaat cgctcgagag tgtaaaatta tttgttgggc ttccgttaga cacagtttca       480
     gactgcaaca atgtgaatca cttgaaagct attacagctg ggcttaaagc tttgaagcta       540
     cttggtgtag aaggtattga gttacctatc ttttggggag ttgttgagaa agaagctgct       600
     gggaaatatg aatggtctgg gtacttggca gtagctgaga ttgttaagaa agtgggactt       660
     aagcttcatg cttcactttc tttccatgga tcgaaacaaa cagagatagg tcttcctgat       720
     tgggtggcaa agattggtga tgctgaacca gggatctatt ttacagatag atatggacaa       780
     cagtacaaag attgtttgtc gtttgctgtt gatgatgttc ctgttcttga tgggaagact       840
     cctatggagg tttacagagg tttctgtgag agcttcaagt ctgctttcgc agattacatg       900
     ggcaacacaa tcacgggaat cacattaggt ttgggaccag acggtgagct gaaatatcct       960
     tctcatcaac ataatgccaa gctctctggc gcgggagagt tccagtgtta cgacaaacac      1020
     atgctttctg ctcttaaagg ctacgctgaa tccactggaa accctctttg gggtctcggt      1080
     ggtcctcacg atgctcctgc ttacgatcaa cagcctaatt cctcttcatt cttctcagac      1140
     ggcgggtcat gggaatctca gtacggcgat ttcttcttgt cttggtattc gtctcttctc      1200
     acctcccacg cagaccgagt cctctccgtt gcttcatctg catttagcgg gattggagtg      1260
     cctctatgtg ggaagctacc tctcttacac caatggcaca agctaagatc tcatccttct      1320
     gagttaacag ctggattcta cagctctaat ggtcaggaca ggtacgaggc tatcgcagag      1380
     atctttgcaa agaactcttg tagaatgata ataccaggaa tggacctatc cgacgagcac      1440
     caatcacctg aatctctctc gagccccgag tcattacttg gccacatcaa aacttcctgc      1500
     aagaaacaag gagtcgttgt ctcagggcaa aactcatcca ccccggttcc tggtgggttt      1560
     gagaggatcg ttgagaatct gaaggatgag aatgtaggaa ttgatctgtt cacttaccag      1620
     agaatgggag cacttttctt ctctccagag catttccatg ctttcacagt ctttgtccgg      1680
     aacctgagcc aattcgagtt gtcctcagac gatcaagcct cagaggctga ggttgaggcc      1740
     gagacagcta gcataggttc aggcactggt gcacctagtt tgcaaaccgc ttaatgaaat      1800
     gcaaaatcat aattttttat gtaaataaga aaagtctcct gttgttttag catttatata      1860
     gaatgtcata ttactgtaaa attatttgca accatttctt cacaaaacat aaatcctgaa      1920
     gcttaag                                                                1927
//