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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY069467; SV 1; linear; mRNA; STD; INV; 1230 BP.
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AC   AY069467;
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DT   19-DEC-2001 (Rel. 70, Created)
DT   20-DEC-2001 (Rel. 70, Last updated, Version 2)
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DE   Drosophila melanogaster LD20793 full length cDNA.
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KW   FLI_CDNA.
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OS   Drosophila melanogaster (fruit fly)
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera;
OC   Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila; Sophophora.
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RN   [1]
RP   1-1230
RA   Stapleton M., Brokstein P., Hong L., Agbayani A., Carlson J., Champe M.,
RA   Chavez C., Dorsett V., Farfan D., Frise E., George R., Gonzalez M.,
RA   Guarin H., Li P., Liao G., Miranda A., Mungall C.J., Nunoo J., Pacleb J.,
RA   Paragas V., Park S., Phouanenavong S., Wan K., Yu C., Lewis S.E.,
RA   Rubin G.M., Celniker S.;
RT   ;
RL   Submitted (10-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL   Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory,
RL   One Cyclotron Road, Berkeley, CA 94720, USA
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CC   Sequence submitted by:
CC   Berkeley Drosophila Genome Project
CC   Lawrence Berkeley National Laboratory
CC   Berkeley, CA 94720
CC   This clone was sequenced as part of a high-throughput process to
CC   sequence clones from Drosophila Gene Collection 1 (Rubin et al.,
CC   Science 2000). The sequence has been subjected to integrity checks
CC   for sequence accuracy, presence of a polyA tail and contiguity
CC   within 100 kb in the genome. Thus we believe the sequence to
CC   reflect accurately this particular cDNA clone.  However, there are
CC   artifacts associated with the generation of cDNA clones that may
CC   have not been detected in our initial analyses such as internal
CC   priming, priming from contaminating genomic DNA, retained introns
CC   due to reverse transcription of unspliced precursor RNAs, and
CC   reverse transcriptase errors that result in single base changes.
CC   For further information about this sequence, including its location
CC   and relationship to other sequences, please visit our Web site
CC   (http://fruitfly.berkeley.edu) or send email to
CC   cdna@fruitfly.berkeley.edu.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1230
FT                   /organism="Drosophila melanogaster"
FT                   /map="19C1-19C1"
FT                   /strain="y; cn bw sp"
FT                   /mol_type="mRNA"
FT                   /db_xref="taxon:7227"
FT   CDS             97..789
FT                   /codon_start=1
FT                   /gene="Peritrophin-A"
FT                   /product="LD20793p"
FT                   /note="Longest ORF"
FT                   /db_xref="FLYBASE:FBgn0022770"
FT                   /db_xref="GOA:O17452"
FT                   /db_xref="InterPro:IPR002557"
FT                   /db_xref="UniProtKB/TrEMBL:O17452"
FT                   /protein_id="AAL39612.1"
FT                   /translation="MQRFQVCSVLILAWIACGHALAVGSPECPEKYGVQAYAHTENCDQ
FT                   FFLCTNGTLTLETCENGLLFDGKGAVHNHCNYNWAVDCKGRQWDPTPISTPACEYQFGL
FT                   YAVSKDCSTTYIKCAHGEPHEQDCDAGLAYDERIHGCNWPDQLLEHCNPEAVVGFKCPT
FT                   KVDPNSVAARFWPFPRFPVAGDCHRLITCVEGHPRLISCGEDKVFDEHTLTCEDPEYAS
FT                   GSCANYGK"
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SQ   Sequence 1230 BP; 282 A; 355 C; 297 G; 296 T; 0 other;
     ttaaaacgta caatcttgga gcggaagttt caagtttctc cattccactt tttgcgcgca        60
     tttgaatata tatatatttt ttttacggca ccaaacatgc agcgattcca agtgtgcagc       120
     gtcctgatcc tggcctggat tgcctgtgga catgccctgg ccgtgggatc cccggagtgc       180
     cccgagaagt acggcgtgca ggcgtacgcc cacacggaga actgcgacca gttcttcctc       240
     tgcaccaacg gcaccctgac cctggagacc tgcgagaacg gactgctctt cgatggcaag       300
     ggcgcggtgc acaaccactg caactacaac tgggcggtgg actgcaaggg ccgccagtgg       360
     gatcccactc ccatttccac gccggcctgc gagtaccagt tcggtctgta cgctgtctcc       420
     aaggactgct ccaccaccta catcaagtgc gcccacggtg agccgcacga gcaggactgc       480
     gacgccgggt tggcctacga cgaaaggatc catggctgca actggccgga tcagctgctg       540
     gagcactgca atcccgaggc ggtcgttggc ttcaagtgcc ccaccaaggt ggaccccaac       600
     tcggtggccg ctcgcttctg gcccttcccc cggttccccg tcgccggcga ctgccaccgc       660
     ctgatcactt gcgtggaggg ccatccgcgc ctgatcagct gcggcgagga caaggtcttc       720
     gacgagcaca cgctgacctg cgaggacccg gagtacgcca gcggcagctg tgccaactac       780
     ggcaagtagg gatcgccgag cgatctgtac atgcacacga acaaacaaac tgcaacagtg       840
     caatctcgat aatgtgaacg ttcaaattaa aggagataca tatgtacata tgtatgtact       900
     tgctggctgc aaatttggag ttatgttgtt ttgcagacaa cccccccctc ctaggtttac       960
     actggttcgc tgcttcgagt gcgcactgta ggctccgact aaccaactac tttcgtccct      1020
     tcatctccgc accttcgctg cactgtaaaa aatgtcctag cccagttagc ttgttaacct      1080
     ttttgctttc taaccaacca accgtctgta tcttgctctt ctttctgtat tattaacttg      1140
     ttttgttgtt tggtctcttt tgtatatgaa tcgcaataaa gttaatttta tttattgtac      1200
     attacatcaa aaaaaaaaaa aaaaaaaaaa                                       1230
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