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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY066039; SV 1; linear; mRNA; STD; PLN; 1248 BP.
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AC   AY066039;
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DT   28-DEC-2001 (Rel. 70, Created)
DT   28-DEC-2001 (Rel. 70, Last updated, Version 1)
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DE   Arabidopsis thaliana AT5g61840/mac9_140 mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1248
RA   Kim C.J., Chen H., Cheuk R., Meyers M.C., Banh J., Bowser L., Carninci P.,
RA   Chang E., Dale J.M., Goldsmith A.D., Hayashizaki Y., Ishida J., Jones T.,
RA   Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lee J.M., Lin J.,
RA   Miranda M., Narusaka M., Nguyen M., Onodera C.S., Palm C.J., Quach H.L.,
RA   Sakurai T., Satou M., Seki M., Southwick A., Tang C.C., Toriumi M.,
RA   Wu H.C., Yamada K., Yamamura Y., Yu G., Yu S., Shinozaki K., Davis R.W.,
RA   Theologis A., Ecker J.R.;
RT   "Arabidopsis ORF clones";
RL   Unpublished.
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RN   [2]
RP   1-1248
RA   Kim C.J., Chen H., Cheuk R., Meyers M.C., Banh J., Bowser L., Carninci P.,
RA   Chang E., Dale J.M., Goldsmith A.D., Hayashizaki Y., Ishida J., Jones T.,
RA   Kamiya A., Karlin-Neumann G., Kawai J., Lam B., Lee J.M., Lin J.,
RA   Miranda M., Narusaka M., Nguyen M., Onodera C.S., Palm C.J., Quach H.L.,
RA   Sakurai T., Satou M., Seki M., Southwick A., Tang C.C., Toriumi M.,
RA   Wu H.C., Yamada K., Yamamura Y., Yu G., Yu S., Shinozaki K., Davis R.W.,
RA   Theologis A., Ecker J.R.;
RT   ;
RL   Submitted (10-DEC-2001) to the EMBL/GenBank/DDBJ databases.
RL   Salk Institute Genomic Analysis Laboratory (SIGnAL), Plant Biology
RL   Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey
RL   Pines Road, La Jolla, CA 92037, USA
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CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA') :  Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P.,  Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Kim,C.J., Chen,H.,
CC   Cheuk,R., Meyers,M.C., Shinn,P., Banh,J. Bowser,L., Chang,E.,
CC   Dale,J.M., Goldsmith,A.D., Jones,T., Karlin-Neumann,G., Lam,B.,
CC   Lee,J.M., Lin,J., Miranda,M., Nguyen,M., Onodera,C.S., Palm,C.J.,
CC   Quach,H.L., Southwick,A., Tang,C.C., Toriumi,M., Wu,H.C.,
CC   Yamada,K., Yamamura, Y., Yu,G., Yu,S., Davis,R.W.,  Theologis,A.,
CC   and Ecker,J.R.
CC   Kim,C.J. (SSP/Salk) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Ecker,J.R. (SSP/Salk)
CC   contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1248
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="5"
FT                   /mol_type="mRNA"
FT                   /clone="U13957"
FT                   /note="This clone is in pUNI 51 ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..1248
FT                   /codon_start=1
FT                   /product="AT5g61840/mac9_140"
FT                   /note="unknown protein"
FT                   /db_xref="GOA:Q940Q8"
FT                   /db_xref="InterPro:IPR004263"
FT                   /db_xref="UniProtKB/TrEMBL:Q940Q8"
FT                   /protein_id="AAL47406.1"
FT                   /translation="MKLSSCVLIFLLCNTFSSISAFRLSRSQPTERISGSAGDVLEDDP
FT                   VGRLKVFVYELPSKYNKKILQKDPRCLNHMFAAEIYMQRFLLSSPVRTLNPEEADWFYV
FT                   PVYTTCDLTPNGLPLPFKSPRMMRSAIQLIASNWPYWNRTEGADHFFVVPHDFGACFHY
FT                   QEEKAIGRGILPLLQRATLVQTFGQRNHVCLKEGSITVPPYAPPQKMQSHLIPEKTPRS
FT                   IFVYFRGLFYDVGNDPEGGYYARGARAAVWENFKDNPLFDISTEHPTTYYEDMQRAIFC
FT                   LCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEDIGVFVDEKDVPYLDTIL
FT                   TSIPPEVILRKQRLLANPSMKQAMLFPQPAQPGDAFHQVLNGLARKLPHERSVYLRPGE
FT                   KLLNWTAGPVADLKPW"
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SQ   Sequence 1248 BP; 336 A; 274 C; 297 G; 341 T; 0 other;
     atgaagttat cgagctgcgt tttgatcttc cttctatgta acacattctc ctcgatttct        60
     gctttccgtc tgagtcggag tcaaccaact gagcgaattt caggtagtgc tggtgatgtg       120
     ttggaagatg atcccgtggg aagactgaaa gtctttgttt atgagcttcc aagtaaatac       180
     aacaagaaga tacttcagaa ggatccgaga tgtctaaacc acatgtttgc tgctgagata       240
     tatatgcaac ggtttctttt atctagccca gttcgaacac ttaatcccga ggaagctgat       300
     tggttctacg tacctgtgta caccacttgt gatctcacgc ctaatgggct tcctcttcct       360
     tttaaatctc cacgaatgat gagaagtgcc attcagctta ttgcttccaa ttggccatac       420
     tggaatcgca cagaaggagc agaccacttc tttgttgtgc ctcatgactt tggagcctgt       480
     ttccattatc aagaagagaa ggcaatagga agaggaatac tacccttgct tcaacgagct       540
     acactggtgc agacatttgg acaaaggaat catgtttgct tgaaagaagg ttcaatcact       600
     gttcctccat atgctccacc acagaagatg cagtcacact taattcccga aaaaactcct       660
     cgatccatct tcgtttattt cagaggattg ttttatgatg tgggaaatga ccctgagggt       720
     ggttattatg cgaggggtgc aagagcagct gtatgggaaa acttcaaaga caatccgctg       780
     tttgacatct caacagagca cccaacaaca tattatgagg acatgcagag agcaatcttc       840
     tgcctatgcc cacttggatg ggccccatgg agtccaagac tggtggaagc agtgatattc       900
     ggttgcatcc ctgtgatcat agcagacgac atcgtgttac cttttgcaga tgcaatccct       960
     tgggaagata ttggtgtgtt tgtggatgag aaagatgtcc cttacctgga cacaatactc      1020
     acatcgatcc caccagaggt tatactgaga aaacagaggt tgttggcaaa cccgtcgatg      1080
     aaacaagcca tgctgttccc gcaaccggct caaccagggg atgcgtttca tcaagtattg      1140
     aatgggttgg ctcgtaagct gcctcatgag aggagtgtgt atctgagacc aggtgagaag      1200
     ctgttgaact ggacggcagg accggtcgct gatctgaaac cttggtaa                   1248
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