 |
|
EBI DbfetchID AY065254; SV 1; linear; mRNA; STD; PLN; 1408 BP. XX AC AY065254; XX DT 13-DEC-2001 (Rel. 70, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 6) XX DE Arabidopsis thaliana putative sarcosine oxidase (At2g24580) mRNA, complete DE cds. XX KW FLI_CDNA. XX OS Arabidopsis thaliana (thale cress) OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; OC eurosids II; Brassicales; Brassicaceae; Arabidopsis. XX RN [1] RP 1-1408 RA Yamada K., Liu S.X., Sakano H., Pham P.K., Banh J., Chung M.K., RA Goldsmith A.D., Lee J.M., Quach H.L., Toriumi M., Yu G., Bowser L., RA Carninci P., Chen H., Cheuk R., Hayashizaki Y., Ishida J., Jones T., RA Kamiya A., Karlin-Neumann G., Kawai J., Kim C., Lam B., Lin J., Miranda M., RA Narusaka M., Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P., RA Southwick A., Shinozaki K., Davis R.W., Ecker J.R., Theologis A.; RT "Arabidopsis Full Length cDNA Clones"; RL Unpublished. XX RN [2] RP 1-1408 RA Yamada K., Banh J., Chang C.H., Chang E., Dale J.M., Goldsmith A.D., RA Lee J.M., Onodera C.S., Quach H.L., Tang C.C., Toriumi M., Wu H.C., RA Yamamura Y., Yu G., Yu S., Bowser L., Carninci P., Chen H., Cheuk R., RA Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G., RA Kawai J., Kim C., Lam B., Lin J., Meyers M.C., Miranda M., Narusaka M., RA Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P., RA Southwick A., Shinozaki K., Davis R.W., Ecker J.R., Theologis A.; RT ; RL Submitted (03-DEC-2001) to the EMBL/GenBank/DDBJ databases. RL Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA XX CC RIKEN Genomic Sciences Center (GSC) members carried out the CC collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN CC Arabidopsis Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J., CC Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J., CC Hayashizaki,Y. and Shinozaki,K. CC The Salk, Stanford, PGEC (SSP) Consortium members carried out the CC sequencing and annotation of the RAFL cDNAs: Yamada,K., Banh,J., CC Chang,C.H., Chang,E., Dale,J.M., Goldsmith,A.D., Lee,J.M., CC Onodera,C.S., Quach,H.L., Tang,C.C., Toriumi,M., Wu,H.C., CC Yamamura,Y., Yu,G., Yu,S., Bowser,L., Chen,H., Cheuk,R., Jones,T., CC Karlin-Neumann,G., Kim,C., Lam,B., Lin,J., Meyers,M.C., Miranda,M., CC Nguyen,M., Palm,C.J., Shinn,P., Southwick,A., Davis,R.W., CC Ecker,J.R. and Theologis,A. CC Yamada,K. (SSP/PGEC) and Seki,M. (RIKEN GSC) contributed equally to CC this work. Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP/PGEC) CC contributed equally to this work as PIs. CC Annotation is based on the January 2002 version of the Arabidopsis CC genome submitted to GenBank. XX FH Key Location/Qualifiers FH FT source 1..1408 FT /organism="Arabidopsis thaliana" FT /chromosome="2" FT /mol_type="mRNA" FT /clone="RAFL09-37-F24 (R18888)" FT /note="This clone is in a modified pBluescript vector FT (FLC-1) as a BamHI/XhoI insert. ecotype: Columbia" FT /db_xref="taxon:3702" FT 5'UTR 1..65 FT /gene="At2g24580" FT misc_difference 1 FT /gene="At2g24580" FT /replace="t" FT /note="compared to genomic sequence" FT CDS 66..1316 FT /codon_start=1 FT /gene="At2g24580" FT /product="putative sarcosine oxidase" FT /db_xref="GOA:Q9SJA7" FT /db_xref="InterPro:IPR006076" FT /db_xref="InterPro:IPR006281" FT /db_xref="UniProtKB/Swiss-Prot:Q9SJA7" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAL38730.1" FT /translation="MEYSDDGRFDVIVVGAGVMGSSAAYQLAKRGQKTLLLEQFDFLHH FT RGSSHGESRTIRATYPEDYYYSMVSESTRLWAAAQSEIGYKVHFPTQQFDMGPADQQSL FT LSVVATCQKHGLAHRVMDSHAVSEHFSGRISIPENWIGVSTELGGIIKPTKAVSMFQTL FT AIGHGAILRDNTKVANIKRDGESGEGVIVCTVKGDKFYGKKCIVTAGAWISKLVKTVAG FT IDFPVEPLETTVCYWRIKEGHEEKFTIDGEFPTFASYGAPYVYGTPSLEYPGLIKVAVH FT GGYWCDPDKRPWGPGVKLEELKEWIKERFGGMVDSEGPVATQLCMYSMTPDEDFVIDFL FT GGEFGRDVVVGGGFSGHGFKMAPAVGRILADMAMEVEAGGGGVEMKQFSLRRFEDNPKG FT NAKEYPDQVILDVPLKH" FT 3'UTR 1317..1408 FT /gene="At2g24580" XX SQ Sequence 1408 BP; 388 A; 274 C; 400 G; 346 T; 0 other; aaaagagcat caacaacaac cacacgcttc tcaaacatca aaccaagcct ctctttcact 60 tcctcatgga atattccgac gacggcagat tcgacgtgat tgtcgttgga gcaggagtta 120 tgggaagctc cgccgcgtat cagctggcaa aaagaggcca gaagactctt ttgttagagc 180 aattcgattt cctccatcac cgtggctctt ctcacggcga gtcacgcacc atacgtgcca 240 cttacccgga ggattactac tactccatgg tttccgagtc gactcggtta tgggctgcgg 300 ctcagtccga gattggatac aaagttcatt ttccaactca acaattcgac atgggtccgg 360 cagatcagca gagtctcctc tccgttgtgg ccacgtgtca aaaacacggg ctagctcatc 420 gggttatgga ttctcatgca gtttccgagc atttctccgg gaggattagt atcccggaga 480 attggatcgg agtttcgacg gaacttggtg ggattatcaa acccaccaag gccgtctcca 540 tgtttcagac gcttgcgatt ggacatggtg ccatcttaag agacaacacc aaagttgcaa 600 acataaagag agatggtgaa agtggggaag gggtaatagt ctgcacggtg aaaggagata 660 agttctacgg taaaaaatgc attgtaaccg cgggtgcatg gataagtaag ctggtgaaaa 720 cggtggccgg gatagatttt ccggtggagc cccttgagac tacggtgtgt tattggagaa 780 tcaaagaagg ccacgaggag aaattcacga tagacggaga gtttccgact ttcgcgtcat 840 acggagctcc gtatgtgtac ggaactccgt ctttggagta tccgggactg atcaaagtgg 900 cggttcacgg tggttattgg tgcgatccgg ataagaggcc atgggggcca ggagtgaagt 960 tagaggagct taaagagtgg ataaaggaga gatttggagg gatggttgat tccgaaggac 1020 ccgtggcgac tcagctttgt atgtattcga tgacaccgga cgaggatttc gtgattgatt 1080 ttcttggagg ggagtttggg agagatgtgg tggtaggcgg cgggttttcc ggtcatggtt 1140 ttaagatggc gccggcggtg gggaggatac tggcggatat ggcgatggag gtggaggccg 1200 gaggtggagg agttgagatg aaacagttta gtctccgacg gtttgaagat aatcctaaag 1260 gaaatgcaaa ggagtatcct gaccaagtga tacttgatgt cccattgaaa cattaaactt 1320 tgttacaaaa tgtcaactgc tgaattaaaa aaaaaatatg gttttaatta taagtctttt 1380 tctagaaatc ataaaaaaaa aaaaaaaa 1408 // |
|