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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY064626; SV 1; linear; mRNA; STD; PLN; 1248 BP.
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AC   AY064626;
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DT   28-DEC-2001 (Rel. 70, Created)
DT   28-DEC-2001 (Rel. 70, Last updated, Version 1)
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DE   Arabidopsis thaliana putative pectinacetylesterase protein (At4g19410;
DE   T5K18.190) mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1248
RA   Lam B., Southwick A., Karlin-Neumann G., Nguyen M., Miranda M., Palm C.J.,
RA   Bowser L., Jones T., Banh J., Carninci P., Chen H., Cheuk R., Chung M.K.,
RA   Hayashizaki Y., Ishida J., Kamiya A., Kawai J., Kim C., Lin J., Liu S.X.,
RA   Narusaka M., Pham P.K., Sakano H., Sakurai T., Satou M., Seki M., Shinn P.,
RA   Yamada K., Shinozaki K., Ecker J., Theologis A., Davis R.W.;
RT   ;
RL   Submitted (29-NOV-2001) to the EMBL/GenBank/DDBJ databases.
RL   DNA Sequencing and Technology Center, Stanford University, 855 California
RL   Avenue, Palo Alto, CA 94304, USA
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CC   e-mail for correspondence: arab@sequence.stanford.edu
CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis  Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T. , Carninci,P., Kawai,J.,
CC   Hayashizaki,Y. and Sh inozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Lam,B.,
CC   Karlin-Neumann,G., Nguyen,M., Southwick,A., Miranda,M., Palm,C.J.,
CC   Bowser,L., Jones,T., Banh,J ., Chen,H., Cheuk,R., Chung,M.K.,
CC   Kim,C., Lin,J., Liu,S.X., Pham,P.K., Sakano,H., Shinn,P.,
CC   Yamada,K., Ecker,J., Theologis,A. and Davis, R.W.
CC   Lam,B., (SSP/Stanford) and Seki,M. (RIKEN GSC) contributed equally
CC   to this work.  Shinozaki,K. (RIKEN GSC) and Davis,R.W.
CC   (SSP/Stanford) contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1248
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="IV"
FT                   /mol_type="mRNA"
FT                   /clone="U15119"
FT                   /note="This clone is in pENTR/SD-dTopo ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..1176
FT                   /codon_start=1
FT                   /gene="At4g19410; T5K18.190"
FT                   /product="putative pectinacetylesterase protein"
FT                   /db_xref="GOA:Q940J8"
FT                   /db_xref="InterPro:IPR004963"
FT                   /db_xref="UniProtKB/TrEMBL:Q940J8"
FT                   /protein_id="AAL47339.1"
FT                   /translation="MGRLKQCWSSLLVLAVLVIGTGAVPITYLQSAVAKGAVCLDGSAP
FT                   AYHFDKGFGSGVNNWIVHMEGGGWCTDVASCNERKGTMKGSSKFMNKDFGFSGILGGKQ
FT                   STNPDFYNWNRIKVRYCDGSSFTGNVEAVNPANKLFFRGARVWRAVVDDLMAKGMKNAQ
FT                   NAILSGCSAGALAAILHCDTFRAILPRTASVKCVSDAGYFIHGKDITGGSYIQSYYSKV
FT                   VALHGSAKSLPVSCTSKMKPELCFFPQYVVPSMRTPLFVINAAFDSWQIKNVLAPTAVD
FT                   KGKEWKNCKLDLKKCSAAQLKTVQGFRDQMMRALSPVHSTPSRGLFLDSCHAHCQGGSA
FT                   ASWSGDKGPQVANTRIAKAVGNWFYGRSAFQKIDCPSPTCNPTCPAISTED"
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SQ   Sequence 1248 BP; 324 A; 271 C; 300 G; 353 T; 0 other;
     atggggaggc ttaagcaatg ttggtcaagt ctgctagtat tggcagtgtt ggtgatcgga        60
     actggagccg ttcccatcac ttatctccaa agcgccgtcg ctaaaggagc cgtgtgtttg       120
     gatgggagtg caccagctta ccattttgac aaagggtttg gttcgggtgt taacaattgg       180
     atcgtccaca tggagggagg aggatggtgt accgacgttg cttcatgtaa tgaacgtaag       240
     ggtacaatga agggttcttc caaattcatg aacaaagact ttggattttc cggtatcttg       300
     ggtggcaagc aaagcactaa cccagatttc tacaattgga acagaatcaa agtacgatat       360
     tgtgacggat catcctttac cggcaatgta gaagccgtta atccggcaaa caagctgttc       420
     ttccgcggtg cccgagtttg gcgtgcggtg gttgatgatc ttatggctaa aggaatgaaa       480
     aacgctcaaa acgctatact ctccggttgt tcagctggag cattggctgc gattcttcat       540
     tgtgacactt tccgtgccat acttccccga acagctagcg tcaaatgtgt ttctgatgcc       600
     ggttacttta tccacggtaa agatatcaca ggaggatcat acattcaatc atattacagc       660
     aaagtcgtcg cactccacgg atctgcaaag agtcttcctg tttcttgtac ctcaaaaatg       720
     aaaccagaac tctgtttctt cccgcaatac gtcgttcctt ccatgcgaac accgctcttt       780
     gtcatcaatg ccgcttttga ttcttggcag atcaagaacg ttttggctcc aactgctgtt       840
     gataagggaa aagagtggaa gaattgtaag cttgatctta agaaatgtag tgccgctcag       900
     ctcaaaaccg tccaagggtt tagagatcag atgatgcgag cattgtcacc ggttcacagt       960
     acaccgtcta gaggattgtt cttagactcg tgtcacgctc attgccaagg aggaagcgcc      1020
     gcctcttggt ccggtgacaa aggtccccaa gtcgccaata cgagaattgc gaaagcagtc      1080
     ggaaactggt tttatggccg gagtgcattt cagaagatag attgtccgtc gccgacttgt      1140
     aatcctactt gtcctgctat ctctactgaa gactagaatc atctctaaat gttcaatttt      1200
     ttttaatttg aaattgaaag agctcgcaaa cattttggat ttgttttc                   1248
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