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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY058234; SV 1; linear; mRNA; STD; PLN; 1188 BP.
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AC   AY058234;
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DT   26-OCT-2001 (Rel. 69, Created)
DT   26-OCT-2001 (Rel. 69, Last updated, Version 1)
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DE   Arabidopsis thaliana At1g71070/F23N20_6 mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1188
RA   Kim C.J., Chen H., Cheuk R., Koesema E., Meyers M.C., Banh J., Bowser L.,
RA   Carninci P., Dale J.M., Goldsmith A.D., Hayashizaki Y., Ishida J.,
RA   Jiang P.X., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B.,
RA   Lee J.M., Lin J., Liu S.X., Miranda M., Narusaka M., Nguyen M.,
RA   Onodera C.S., Palm C.J., Pham P.K., Quach H.L., Sakurai T., Satou M.,
RA   Seki M., Southwick A., Tang C.C., Toriumi M., Yamada K., Yamamura Y.,
RA   Yu G., Yu S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   "Arabidopsis ORF clones";
RL   Unpublished.
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RN   [2]
RP   1-1188
RA   Kim C.J., Chen H., Cheuk R., Koesema E., Meyers M.C., Banh J., Bowser L.,
RA   Carninci P., Dale J.M., Goldsmith A.D., Hayashizaki Y., Ishida J.,
RA   Jiang P.X., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B.,
RA   Lee J.M., Lin J., Liu S.X., Miranda M., Narusaka M., Nguyen M.,
RA   Onodera C.S., Palm C.J., Pham P.K., Quach H.L., Sakurai T., Satou M.,
RA   Seki M., Southwick A., Tang C.C., Toriumi M., Yamada K., Yamamura Y.,
RA   Yu G., Yu S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   ;
RL   Submitted (08-OCT-2001) to the EMBL/GenBank/DDBJ databases.
RL   Salk Institute Genomic Analysis Laboratory (SIGnAL), Plant Biology
RL   Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey
RL   Pines Road, La Jolla, CA 92037, USA
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CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA') :  Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P.,  Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Kim,C.J., Chen,H.,
CC   Cheuk,R., Koesema,E., Meyers,M.C., Shinn,P., Banh,J. Bowser,L.,
CC   Dale,J.M., Goldsmith,A.D., Jiang,P.X., Jones,T., Karlin-Neumann,G.,
CC   Lam,B., Lee,J.M., Lin,J., Liu,S.X., Miranda,M., Nguyen,M.,
CC   Onodera,C.S., Palm,C.J., Pham,P.K., Quach,H.L., Southwick,A.,
CC   Tang,C.C., Toriumi,M., Yamada,K., Yamamura, Y., Yu,G., Yu,S.,
CC   Davis,R.W.,  Theologis,A., and Ecker,J.R.
CC   Kim,C.J. (SSP/Salk) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Ecker,J.R. (SSP/Salk)
CC   contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1188
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="1"
FT                   /mol_type="mRNA"
FT                   /clone="U13171"
FT                   /note="This clone is in pUNI 51 ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..1188
FT                   /codon_start=1
FT                   /product="At1g71070/F23N20_6"
FT                   /note="glycosylation enzyme-like protein"
FT                   /db_xref="GOA:Q9C9A1"
FT                   /db_xref="InterPro:IPR003406"
FT                   /db_xref="UniProtKB/TrEMBL:Q9C9A1"
FT                   /protein_id="AAL15408.1"
FT                   /translation="MGAEKKWLFTLFSVVFLSVFLLLLYSISAFTSKPFPSSIRHGAHY
FT                   PPAFAYYITGGRGDNDRISRLLLAVYHPRNRYLIHLGAEATDAERLALLSDLKSVPAVN
FT                   AFGNVDVLGKVDRLSENGASKIASTLHAVSILLKLDPTWNWFIELSALDYPLITQDDLS
FT                   HVFASVNRSLNFIDHTSDLAWKESQRIKPIVVDPALYLARRTQLFTATEKRPTPDAFKV
FT                   FTGSPWIVLSRPFLEYCIFGWDNLPRILLMYFNNVILSEECYFHTVICNAPEFSNTTVN
FT                   GDLRYMIWDSPPKMEPHFLTISDFDQMAQSGAAFARQFKKDDPVLDMVDREILKRGRYR
FT                   VTPGAWCSSHSSWWTDPCSEWDEVNIVKAGPQAKKLDETITNFLDDLNSQSNQCK"
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SQ   Sequence 1188 BP; 310 A; 264 C; 244 G; 370 T; 0 other;
     atgggagctg aaaagaaatg gcttttcaca ctcttctctg tagtattcct ctcagtgttc        60
     cttctcttac tttattctat ctctgctttc acctctaaac cattcccttc ttcaattcgt       120
     cacggtgctc attacccacc tgcttttgct tattacataa ccggtggtcg tggagataat       180
     gaccggatct ctcggttatt gcttgcggtt tatcatccta ggaatcggta tcttatccat       240
     ctgggtgctg aagctactga tgcagagagg ctagctcttc tctctgattt gaaatctgtt       300
     cctgctgtga atgcttttgg gaatgttgat gttttaggga aagttgatcg tttgtctgag       360
     aatggtgctt ctaagattgc ttctactctt cacgctgttt ctattcttct taagcttgat       420
     cctacttgga attggtttat tgagcttagt gctttggatt atcctctcat aactcaagat       480
     gacctatctc atgtgtttgc ctcggtgaac agaagtctca attttattga tcacactagt       540
     gaccttgctt ggaaagaatc tcagagaatc aagcctattg ttgttgatcc agcactttac       600
     ttagctagaa gaactcagct cttcactgct accgaaaagc gaccaacacc agatgcattc       660
     aaagtcttta caggctcgcc ttggattgta ctaagcagac ctttcctaga atactgcatc       720
     ttcggttggg ataatttacc aagaatcctt ctcatgtatt ttaacaatgt cattctctct       780
     gaagaatgct acttccacac ggtgatatgc aacgcaccgg agttcagtaa cacgacagtc       840
     aacggggact tacgatacat gatatgggac agtccaccaa aaatggaacc acatttcctt       900
     actatatcgg atttcgacca aatggctcaa agcggagcag ctttcgctag acaattcaag       960
     aaagatgatc cagtactcga catggtcgat agagagatcc tgaaacgtgg acgttacaga      1020
     gtcactcctg gcgcttggtg ctcgagccac agtagctggt ggacagatcc ttgctcggag      1080
     tgggatgaag taaacattgt caaagctgga cctcaagcta agaagctaga cgaaacaata      1140
     acgaattttc ttgatgattt gaattcacaa tcgaatcaat gcaagtga                   1188
//
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