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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY057600; SV 1; linear; mRNA; STD; PLN; 1566 BP.
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AC   AY057600;
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DT   23-OCT-2001 (Rel. 69, Created)
DT   23-OCT-2001 (Rel. 69, Last updated, Version 1)
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DE   Arabidopsis thaliana AT5g15050/F2G14_170 mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1566
RA   Cheuk R., Chen H., Kim C.J., Koesema E., Meyers M.C., Banh J., Bowser L.,
RA   Carninci P., Dale J.M., Goldsmith A.D., Hayashizaki Y., Ishida J.,
RA   Jiang P.X., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B.,
RA   Lee J.M., Lin J., Liu S.X., Miranda M., Narusaka M., Nguyen M.,
RA   Onodera C.S., Palm C.J., Pham P.K., Quach H.L., Sakurai T., Satou M.,
RA   Seki M., Southwick A., Tang C.C., Toriumi M., Yamada K., Yamamura Y.,
RA   Yu G., Yu S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   "Arabidopsis cDNA clones";
RL   Unpublished.
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RN   [2]
RP   1-1566
RA   Cheuk R., Chen H., Kim C.J., Koesema E., Meyers M.C., Banh J., Bowser L.,
RA   Carninci P., Dale J.M., Goldsmith A.D., Hayashizaki Y., Ishida J.,
RA   Jiang P.X., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B.,
RA   Lee J.M., Lin J., Liu S.X., Miranda M., Narusaka M., Nguyen M.,
RA   Onodera C.S., Palm C.J., Pham P.K., Quach H.L., Sakurai T., Satou M.,
RA   Seki M., Southwick A., Tang C.C., Toriumi M., Yamada K., Yamamura Y.,
RA   Yu G., Yu S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   ;
RL   Submitted (20-SEP-2001) to the EMBL/GenBank/DDBJ databases.
RL   Salk Institute Genomic Analysis Laboratory (SIGnAL), Plant Biology
RL   Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey
RL   Pines Road, La Jolla, CA 92037, USA
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CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA') :  Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P.,  Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Cheuk,R., Chen,H.,
CC   Kim,C.J., Koesema,E., Meyers,M.C., Shinn,P., Banh,J. Bowser,L.,
CC   Dale,J.M., Goldsmith,A.D., Jiang,P.X., Jones,T., Karlin-Neumann,G.,
CC   Lam,B., Lee,J.M., Lin,J., Liu,S.X., Miranda,M., Nguyen,M.,
CC   Onodera,C.S., Palm,C.J., Pham,P.K., Quach,H.L., Southwick,A.,
CC   Tang,C.C., Toriumi,M., Yamada,K., Yamamura, Y., Yu,G., Yu,S.,
CC   Davis,R.W.,  Theologis,A., and Ecker,J.R.
CC   Cheuk,R. (SSP/Salk) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Ecker,J.R. (SSP/Salk)
CC   contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1566
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="5"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL09-34-G03(R14620)"
FT                   /note="ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   5'UTR           1..79
FT   CDS             80..1384
FT                   /codon_start=1
FT                   /product="AT5g15050/F2G14_170"
FT                   /note="unknown protein"
FT                   /db_xref="GOA:Q9LFQ0"
FT                   /db_xref="InterPro:IPR003406"
FT                   /db_xref="UniProtKB/TrEMBL:Q9LFQ0"
FT                   /protein_id="AAL14395.1"
FT                   /translation="MKKLKSYYMQVRNQQQSLDRKWILPLAIGSICSLFLLLLTNLASS
FT                   SGQTRLIPFSVYGFRSSVFVESKINPVSVSLTVSVSPPPPPRLAYLISGSSGDGQMLKR
FT                   TLMALYHPNNQYVVHLDRESSPEERLDLSGFVANHTLFQRFQNVRMIVKANFVTYRGPT
FT                   MVANTLHAAAILLREGGDWDWFINLSASDYPLVTQDDLLHTFSYLPRDLNFIDHTSNIG
FT                   WKESHRAKPIIIDPGLYMSKKADVFWVSQKRSMPTAFKLFTGSAWMMLSRPFVDYFIWG
FT                   WDNLPRIVLMYYANFLSSPEGYFHTVICNAREFTNTTVNSDLHFISWDNPPKQHPHHLT
FT                   LDDFQRMVDSNAPFARKFRRDEPVLDKIDSELLFRSHGMVTPGGWCIGTRENGSDPCAV
FT                   IGDTSVIKPGLGAKRIEKLITYLLSTENFRPRQCR"
FT   3'UTR           1385..1566
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SQ   Sequence 1566 BP; 408 A; 328 C; 329 G; 501 T; 0 other;
     actctcaagt ctctctaagc cacaaaccac tgaagaagaa tccatctaag agctgttaaa        60
     aattgatgaa gcttcgaata tgaagaaatt gaaaagctat tacatgcaag ttcgtaacca       120
     gcaacaatct cttgaccgaa aatggattct tccattagca atcggatcca tttgttctct       180
     ctttctcttg ttgctaacga acttagcttc ttcttctggt caaactcgtt tgattccatt       240
     ttcagtttac ggatttagat cctccgtctt cgtcgaatcc aagataaatc cagtatccgt       300
     ctcactcacc gtctccgtct ctcctcctcc gccgccacgt ctcgcttatc taatctccgg       360
     ctcctctggt gacggtcaga tgctgaaacg aactctaatg gcgctttatc atcccaacaa       420
     ccagtacgtt gttcatctcg atcgggaatc ttcaccggag gaacgattgg atctcagtgg       480
     ttttgtggcg aatcatactc tgtttcagag atttcaaaat gttcggatga ttgttaaggc       540
     taatttcgtt acgtatcgtg gtccaactat ggtggctaat acacttcacg ctgcagcgat       600
     tttgcttcgt gaaggtggtg attgggattg gttcatcaat ctcagtgcct ctgattatcc       660
     tctcgtaaca caagatgatc tgttgcatac gttttcgtat cttcctcgag atctcaattt       720
     catcgatcat acaagcaaca ttggctggaa agagtctcat agagcaaagc ctataattat       780
     tgatcctggt ttgtatatgt caaagaaagc tgatgttttc tgggtttcac agaagagaag       840
     tatgcctaca gctttcaaac tcttcacagg atctgcgtgg atgatgttat ctagaccttt       900
     tgtggattat ttcatatggg gatgggataa tcttcctcga attgtgttaa tgtattacgc       960
     aaacttcctt tcatcgccag aaggttactt ccacactgtg atttgcaatg ctcgagagtt      1020
     taccaacaca acggttaaca gtgacttaca tttcatctca tgggacaatc ctccaaagca      1080
     acatcctcac catcttacat tagatgattt ccagagaatg gtggacagta acgctccttt      1140
     tgctaggaaa ttccgtagag atgagcctgt tctcgataag attgattcgg aactattgtt      1200
     tcggagtcac gggatggtca ctccgggtgg ttggtgtatt ggtacgaggg aaaacgggag      1260
     cgatccgtgt gcggtgattg gtgatacgtc ggttattaaa cctggtcttg gagctaaacg      1320
     gatcgagaaa ctcataactt atttgttatc tactgagaat ttcagaccac ggcaatgccg      1380
     gtaatggcaa attagagttt tgtcatagag atggttacgt ggtttttcac acaaatgaac      1440
     tgtattgatt atccgatact ttgatatggt tgtatagaga tctttttgga ctttcttcat      1500
     ttgagaaagt gcagaaattt cgggaaagat cattgattat tggaatttgt cttctattgc      1560
     cgaccg                                                                 1566
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