EBI Dbfetch

ID   AY056382; SV 1; linear; mRNA; STD; PLN; 1925 BP.
XX
AC   AY056382;
XX
DT   05-OCT-2001 (Rel. 69, Created)
DT   16-APR-2005 (Rel. 83, Last updated, Version 2)
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DE   Arabidopsis thaliana At1g27520/T17H3_2 mRNA, complete cds.
XX
KW   FLI_CDNA.
XX
OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1925
RA   Cheuk R., Chen H., Kim C.J., Koesema E., Meyers M.C., Banh J., Bowser L.,
RA   Carninci P., Dale J.M., Goldsmith A.D., Hayashizaki Y., Ishida J.,
RA   Jiang P.X., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B.,
RA   Lee J.M., Lin J., Liu S.X., Miranda M., Narusaka M., Nguyen M.,
RA   Onodera C.S., Palm C.J., Pham P.K., Quach H.L., Sakurai T., Satou M.,
RA   Seki M., Southwick A., Tang C.C., Toriumi M., Yamada K., Yamamura Y.,
RA   Yu G., Yu S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   "Arabidopsis cDNA clones";
RL   Unpublished.
XX
RN   [2]
RP   1-1925
RA   Cheuk R., Chen H., Kim C.J., Koesema E., Meyers M.C., Banh J., Bowser L.,
RA   Carninci P., Dale J.M., Goldsmith A.D., Hayashizaki Y., Ishida J.,
RA   Jiang P.X., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B.,
RA   Lee J.M., Lin J., Liu S.X., Miranda M., Narusaka M., Nguyen M.,
RA   Onodera C.S., Palm C.J., Pham P.K., Quach H.L., Sakurai T., Satou M.,
RA   Seki M., Southwick A., Tang C.C., Toriumi M., Yamada K., Yamamura Y.,
RA   Yu G., Yu S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   ;
RL   Submitted (10-SEP-2001) to the EMBL/GenBank/DDBJ databases.
RL   Salk Institute Genomic Analysis Laboratory (SIGnAL), Plant Biology
RL   Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey
RL   Pines Road, La Jolla, CA 92037, USA
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CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA') :  Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P.,  Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Cheuk,R., Chen,H.,
CC   Kim,C.J., Koesema,E., Meyers,M.C., Shinn,P., Banh,J. Bowser,L.,
CC   Dale,J.M., Goldsmith,A.D., Jiang,P.X., Jones,T., Karlin-Neumann,G.,
CC   Lam,B., Lee,J.M., Lin,J., Liu,S.X., Miranda,M., Nguyen,M.,
CC   Onodera,C.S., Palm,C.J., Pham,P.K., Quach,H.L., Southwick,A.,
CC   Tang,C.C., Toriumi,M., Yamada,K., Yamamura, Y., Yu,G., Yu,S.,
CC   Davis,R.W.,  Theologis,A., and Ecker,J.R.
CC   Cheuk,R. (SSP/Salk) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Ecker,J.R. (SSP/Salk)
CC   contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1925
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="1"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL09-32-F20(R14266)"
FT                   /note="ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   5'UTR           1..92
FT   CDS             93..1817
FT                   /codon_start=1
FT                   /product="At1g27520/T17H3_2"
FT                   /note="unknown protein"
FT                   /db_xref="GOA:Q9SXC9"
FT                   /db_xref="HSSP:1FO3"
FT                   /db_xref="InterPro:IPR001382"
FT                   /db_xref="UniProtKB/TrEMBL:Q9SXC9"
FT                   /protein_id="AAL08238.1"
FT                   /translation="MSCPIHPRRLFLCLLISLTFFVVDPSSQHIEVKKKQMREKVREMF
FT                   YHAYDNYMTYAFPHDELKPLTKSFTDSLSELGNLKLEHLPTDYNGSAVTLVESLSSLAI
FT                   LGNSTEFEKGVLWLSENLTFDIDARVNLFECNIRVLGGLISAHLLAIDPNNRLIQGSYN
FT                   NQLLRLAEDLGKRFLPAFETPTGLPYAWINLKNGVMENETTETSTSGCGSLVLEMGALS
FT                   RLTGDPRFESAALRALRQLWRMRSSLDLLGTTLDVVTGEWIEYSSSIGAGVDSFYEYLL
FT                   KAYILFGKEDYWRMFHSAYLASQKYFRHGPWYHEANMWSGKPTYWQLTSLQAFWPGLQV
FT                   LVGDIAAANSSHREFFHVWEKFGVLPERYLLDHQIIHPTMKYYPLRPELAESTFYLYQA
FT                   TKDPWYLDVGESMVKSLNLYTKVPGGFASVRDVTTMQLEDHQHSFFLAETCKYLYLLFD
FT                   DSFVAKRNYIFTTEGHPIQVVSSWHEKLPETYFSGNWTLSKSGAWESRASALSLQVCPL
FT                   ISLNSRHPEQQRESACHVLDEQINHKCWSNKECGVDATTCRLRTCSGVGYCGLWNPL"
FT   3'UTR           1818..1925
XX
SQ   Sequence 1925 BP; 531 A; 394 C; 431 G; 569 T; 0 other;
     ggcggagact ggcggagatg atgaattcat aaattccttc ttctcctttc ctctcttttc        60
     atttgattgg cttcttacac agcttcgtca tcatgtcttg tcctatccat cctaggcgtc       120
     tcttcctctg cttgcttatt tctctcactt tcttcgtcgt cgacccttca tcgcagcata       180
     tcgaggtcaa gaagaaacaa atgcgagaga aagtacgcga gatgttctat catgcgtatg       240
     acaattacat gacttatgca tttccgcatg atgagctaaa gcctctaact aaaagtttca       300
     cagactccct cagtgagctt ggaaatctta agcttgaaca cctgccaaca gattataatg       360
     gatcagctgt tactcttgtt gaatcattat ccagccttgc tatattgggg aacagtacag       420
     aatttgaaaa gggggttctc tggctctcag aaaatcttac tttcgatatt gatgcccggg       480
     tcaacctttt tgagtgcaat ataagagttc ttggaggact tatctctgct catcttcttg       540
     caattgatcc aaataatagg ttgattcagg gttcctacaa caatcagctt cttcgattag       600
     ctgaagacct tggaaaacgt tttttacccg cgtttgaaac acctacagga ttaccatatg       660
     catggattaa tttgaagaat ggagtaatgg agaatgagac aactgaaaca agcacttcag       720
     gatgtggttc tctcgttctt gaaatgggag cattgtcacg gctcactggt gacccgaggt       780
     ttgaatcagc tgcactacgt gcgcttcgtc agctatggag gatgcgaagt tcgttagatc       840
     tgcttgggac aacattggat gtggtaactg gggaatggat agagtactcc tctagcattg       900
     gagctggggt tgactctttc tatgaatacc tcttgaaggc ttatattctt tttggaaaag       960
     aagactactg gcgaatgttt cattctgctt atctggcatc tcagaagtac ttcagacatg      1020
     ggccttggta ccatgaagct aatatgtgga gtggaaaacc aacttactgg cagctcacaa      1080
     gtcttcaggc gttttggcct ggtctgcagg ttcttgttgg agatattgca gctgcaaatt      1140
     catcgcatcg tgagtttttc catgtatggg aaaagtttgg tgtattacct gagaggtatc      1200
     tactcgatca tcaaataata catccgacaa tgaagtacta tccactacgt cctgaattag      1260
     cagaatccac gttctacctt taccaagcta caaaagatcc atggtatcta gatgttggtg      1320
     aatcaatggt aaaatctctt aatctctaca caaaggtgcc agggggattt gcaagtgtta      1380
     gagatgtgac gaccatgcaa ttggaagatc atcagcacag tttctttctc gctgaaacgt      1440
     gcaagtacct atatctcctc ttcgatgact catttgtggc caaaaggaat tatatattta      1500
     caaccgaggg ccatcctata caggttgtga gctcctggca tgagaaacta ccagaaactt      1560
     atttctcagg caactggacc ctttcaaaga gtggagcatg ggaaagtcga gctagcgcat      1620
     tgtcactaca agtctgtcca ctgatatctc ttaactctag acatcctgag caacaaagag      1680
     agagtgcttg ccatgttctt gacgagcaaa tcaatcataa gtgttggagc aacaaagagt      1740
     gcggagttga tgccactact tgtagactaa gaacctgcag cggggttgga tactgcggct      1800
     tatggaatcc cttataactt ttgacacaaa acagtggggt cttgggtttt aataaaggaa      1860
     agagaagagg tggagtttac gaactgaaac tgtaaattaa tgcgaaatga caagttttgg      1920
     taggc                                                                  1925
//