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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY056239; SV 1; linear; mRNA; STD; PLN; 1766 BP.
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AC   AY056239;
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DT   02-OCT-2001 (Rel. 69, Created)
DT   14-NOV-2006 (Rel. 89, Last updated, Version 4)
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DE   Arabidopsis thaliana unknown protein (At5g16890) mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1766
RA   Yamada K., Liu S.X., Sakano H., Pham P.K., Banh J., Chung M.K.,
RA   Goldsmith A.D., Lee J.M., Quach H.L., Toriumi M., Yu G., Bowser L.,
RA   Carninci P., Chen H., Cheuk R., Hayashizaki Y., Ishida J., Jones T.,
RA   Kamiya A., Karlin-Neumann G., Kawai J., Kim C., Lam B., Lin J., Miranda M.,
RA   Narusaka M., Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P.,
RA   Southwick A., Shinozaki K., Davis R.W., Ecker J.R., Theologis A.;
RT   "Arabidopsis Full Length cDNA Clones";
RL   Unpublished.
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RN   [2]
RP   1-1766
RA   Yamada K., Banh J., Banno F., Dale J.M., Goldsmith A.D., Lee J.M.,
RA   Onodera C.S., Quach H.L., Tang C.C., Toriumi M., Yamamura Y., Yu G., Yu S.,
RA   Bowser L., Carninci P., Chen H., Cheuk R., Hayashizaki Y., Ishida J.,
RA   Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Kim C., Koesema E.,
RA   Lam B., Lin J., Meyers M.C., Miranda M., Narusaka M., Nguyen M., Palm C.J.,
RA   Sakurai T., Satou M., Seki M., Shinn P., Southwick A., Tracy S.E.,
RA   Shinozaki K., Davis R.W., Ecker J.R., Theologis A.;
RT   ;
RL   Submitted (12-SEP-2001) to the EMBL/GenBank/DDBJ databases.
RL   Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA
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CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Yamada,K., Banh,J.,
CC   Banno,F., Dale,J.M., Goldsmith,A.D., Lee,J.M., Onodera,C.S.,
CC   Quach,H.L., Tang,C.C., Toriumi,M., Yamamura,Y., Yu,G., Yu,S.,
CC   Bowser,L., Chen,H., Cheuk,R., Jones,T., Karlin-Neumann,G., Kim,C.,
CC   Koesema,E., Lam,B., Lin,J., Meyers,M.C., Miranda,M., Nguyen,M.,
CC   Palm,C.J., Shinn,P., Southwick,A., Tracy,S.E., Davis,R.W.,
CC   Ecker,J.R. and Theologis,A.
CC   Yamada,K. (SSP/PGEC) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP/PGEC)
CC   contributed equally to this work as PIs.
CC   Annotation is based on the January 2002 version of the Arabidopsis
CC   genome submitted to GenBank.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1766
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="5"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL08-11-I04 (R11182)"
FT                   /note="This clone is in a modified pBluescript vector
FT                   (FLC-1) as a BamHI/XhoI insert. ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   5'UTR           1..37
FT                   /gene="At5g16890"
FT   misc_difference 1..2
FT                   /gene="At5g16890"
FT                   /replace="gt"
FT                   /note="compared to genomic sequence"
FT   CDS             38..1573
FT                   /codon_start=1
FT                   /gene="At5g16890"
FT                   /product="unknown protein"
FT                   /db_xref="GOA:Q9LFL2"
FT                   /db_xref="InterPro:IPR004263"
FT                   /db_xref="UniProtKB/TrEMBL:Q9LFL2"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT                   /protein_id="AAL07088.1"
FT                   /translation="MSGKQQNHRSTSSRPRSKTLILIGSLFTVSLLVILYTSSSSSRAS
FT                   ISNPNPSDRPETSFVTSLEHFLIYKAPKLSLPVRDDTVRGESDDDVRKLDEMVFERENR
FT                   WLNEDPGYPVEFPIKVYVYEMPKKFTFDLLWLFHNTYKETSNATSNGSPVHRLIEQHSI
FT                   DYWLWADLISPESERRLKSVVRVQKQQDADFFYVPFFTTISFFLLEKQQCKALYREALK
FT                   WVTDQPAWKRSEGRDHIFPIHHPWSFKSVRKFVKNAIWLLPDMDSTGNWYKPGQVSLEK
FT                   DLILPYVPNVDICDTKCLSESAPMRTTLLFFRGRLKRNAGGKIRAKLGAELSGIKDIII
FT                   SEGTAGEGGKLAAQRGMRRSLFCLCPAGDTPSSARLFDAIVSGCIPVIVSDELEFPFEG
FT                   ILDYKKVAVLVSSSDAIQPGWLVNHLRSLTPFQVKGLQNNLAQYSRHFLYSSPAQPLGP
FT                   EDLTWRMIAGKLVNIKLHTRRSQRVVKGSRSICRCDCWRSNSTASNSLSSLLS"
FT   3'UTR           1574..1766
FT                   /gene="At5g16890"
FT   misc_difference 1750
FT                   /gene="At5g16890"
FT                   /note="not present in genomic sequence"
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SQ   Sequence 1766 BP; 471 A; 384 C; 389 G; 522 T; 0 other;
     tgaatcgaac tcagatttcg aagaagcaga tctcacaatg tctggaaaac agcaaaatca        60
     tcgttctact tcctccagac ccagatccaa aaccctaatc ctcatcggct ctctcttcac       120
     cgtctctcta ctcgtcatcc tctacacctc ttcttcctcc tcccgagcct ccatctccaa       180
     tcccaacccg tcggaccgac cagagacgtc cttcgttacc tcgcttgagc atttcttaat       240
     atataaagct ccgaagctct cgttaccggt tagagacgac acggtgcgtg gcgagagtga       300
     tgatgatgtg aggaagctcg atgagatggt gttcgagaga gagaatcgtt ggttgaacga       360
     agatccggga tatcctgttg aatttccgat taaggtttac gtgtatgaga tgccgaagaa       420
     gtttactttc gatcttctct ggttatttca caatacttac aaagagactt cgaatgctac       480
     ctctaatggt agccctgtgc atcgtctaat cgaacagcat tctattgact attggctttg       540
     ggctgatctg atatctcctg aatctgaaag gcgtttgaaa agtgtcgtga gagttcagaa       600
     gcagcaggac gccgactttt tctatgttcc gtttttcact acaatcagct ttttcttgtt       660
     ggagaagcag caatgcaaag cactctatag ggaagctttg aagtgggtca ctgatcagcc       720
     tgcttggaag aggtccgagg gaagggatca catatttcct attcatcatc cttggtcctt       780
     caagtctgtc cgcaaatttg tgaaaaacgc aatctggctt ttaccagata tggactccac       840
     tggcaattgg tataagcctg ggcaagtttc attggagaaa gacctaattc ttccttatgt       900
     tcccaatgtt gatatctgtg ataccaaatg cttgtcagaa agtgcaccaa tgagaaccac       960
     attacttttt ttccgagggc ggcttaagcg aaatgcaggg ggtaaaatac gtgccaaact      1020
     tggtgcagaa ttaagtggta tcaaggatat aataatttct gaggggactg ccggagaggg      1080
     aggaaaattg gcagcgcaac gtggcatgcg tagatcttta ttctgtttgt gtcctgctgg      1140
     tgacacacca tcttcagcga ggttgtttga tgccattgtc agtggctgta tacctgttat      1200
     agtcagtgac gagttggaat ttccttttga aggaatactt gattacaaga aggttgctgt      1260
     gcttgtttct tccagtgatg caatacagcc agggtggctt gtaaaccatc tgagaagtct      1320
     tacgcccttc caagtcaagg ggttgcagaa taatcttgct caatactctc gccatttcct      1380
     atattcgagc cctgctcagc cattaggtcc agaggacttg acatggagaa tgatagccgg      1440
     aaagctggtg aatatcaagc ttcacacgag gaggtcacag cgggtcgtga aaggatctag      1500
     gagtatttgc agatgcgatt gctggagatc caactctaca gcctccaatt ctttgagttc      1560
     tctcttgtct taagaccgat cactctgact tcacattcca gtcttgaata ccctagatat      1620
     atactgtgga atgtgtatcc tattcaattt taacattgtt tgctatttta tataatgtaa      1680
     ttcctgttca tcttcgcaac ttggctactt ttagctacgt ggaaatatta tgaaactaac      1740
     attttatacg aaaaaaaaaa aaaaaa                                           1766
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