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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY054531; SV 1; linear; mRNA; STD; PLN; 1361 BP.
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AC   AY054531;
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DT   06-SEP-2001 (Rel. 69, Created)
DT   06-SEP-2001 (Rel. 69, Last updated, Version 1)
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DE   Arabidopsis thaliana putative pectinacetylesterase protein (At4g19410;
DE   T5K18.190) mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1361
RA   Southwick A., Karlin-Neumann G., Nguyen M., Lam B., Miranda M., Palm C.J.,
RA   Bowser L., Jones T., Banh J., Carninci P., Chen H., Cheuk R., Chung M.K.,
RA   Hayashizaki Y., Ishida J., Kamiya A., Kawai J., Kim C., Lin J., Liu S.X.,
RA   Narusaka M., Pham P.K., Sakano H., Sakurai T., Satou M., Seki M., Shinn P.,
RA   Yamada K., Shinozaki K., Ecker J., Theologis A., Davis R.W.;
RT   ;
RL   Submitted (28-AUG-2001) to the EMBL/GenBank/DDBJ databases.
RL   DNA Sequencing and Technology Center, Stanford University, 855 California
RL   Avenue, Palo Alto, CA 94304, USA
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CC   e-mail for correspondence:  arab@sequence.stanford.edu
CC   RIKEN Genomic Sciences Center (GSC) members  carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : ''RIKEN
CC   Arabidopsis  Full-Length cDNA''): Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M.,  Kamiya,A., Sakurai,T., Carninci,P., Kawai,J.,
CC   Hayashizaki,Y. and  Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out  the
CC   sequencing and annotation of the RAFL cDNAs: Nguyen,M.,
CC   Southwick,A.,  Karlin-Neumann,G.,  Lam,B., Miranda,M., Palm,C.J.,
CC   Bowser,L., Jones,T.,  Banh,J., Chen,H., Cheuk,R., Chung,M.K.,
CC   Kim,C., Lin,J., Liu,S.X., Pham,P.K.,  Sakano,H., Shinn,P.,
CC   Yamada,K., Ecker,J., Theologis,A. and  Davis,R.W.
CC   Southwick,A., (SSP/Stanford) and Seki,M. (RIKEN GSC) contributed
CC   equally to this work.  Shinozaki,K. (RIKEN GSC) and Davis,R.W.
CC   (SSP/Stanford)  contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1361
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="IV"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL09-18-O16"
FT                   /note="This clone is in pBluescript"
FT                   /db_xref="taxon:3702"
FT   CDS             64..1239
FT                   /codon_start=1
FT                   /gene="At4g19410; T5K18.190"
FT                   /product="putative pectinacetylesterase protein"
FT                   /db_xref="GOA:Q940J8"
FT                   /db_xref="InterPro:IPR004963"
FT                   /db_xref="UniProtKB/TrEMBL:Q940J8"
FT                   /protein_id="AAK96722.1"
FT                   /translation="MGRLKQCWSSLLVLAVLVIGTGAVPITYLQSAVAKGAVCLDGSAP
FT                   AYHFDKGFGSGVNNWIVHMEGGGWCTDVASCNERKGTMKGSSKFMNKDFGFSGILGGKQ
FT                   STNPDFYNWNRIKVRYCDGSSFTGNVEAVNPANKLFFRGARVWRAVVDDLMAKGMKNAQ
FT                   NAILSGCSAGALAAILHCDTFRAILPRTASVKCVSDAGYFIHGKDITGGSYIQSYYSKV
FT                   VALHGSAKSLPVSCTSKMKPELCFFPQYVVPSMRTPLFVINAAFDSWQIKNVLAPTAVD
FT                   KGKEWKNCKLDLKKCSAAQLKTVQGFRDQMMRALSPVHSTPSRGLFLDSCHAHCQGGSA
FT                   ASWSGDKGPQVANTRIAKAVGNWFYGRSAFQKIDCPSPTCNPTCPAISTED"
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SQ   Sequence 1361 BP; 368 A; 295 C; 312 G; 386 T; 0 other;
     attaacacca aaaccttttt cttctctcta accaaacaag aagaggactc cattttcgca        60
     agaatgggga ggcttaagca atgttggtca agtctgctag tattggcagt gttggtgatc       120
     ggaactggag ccgttcccat cacttatctc caaagcgccg tcgctaaagg agccgtgtgt       180
     ttggatggga gtgcaccagc ttaccatttt gacaaagggt ttggttcggg tgttaacaat       240
     tggatcgtcc acatggaggg aggaggatgg tgtaccgacg ttgcttcatg taatgaacgt       300
     aagggtacaa tgaagggttc ttccaaattc atgaacaaag actttggatt ttccggtatc       360
     ttgggtggca agcaaagcac taacccagat ttctacaatt ggaacagaat caaagtacga       420
     tattgtgacg gatcatcctt taccggcaat gtagaagccg ttaatccggc aaacaagctg       480
     ttcttccgcg gtgcccgagt ttggcgtgcg gtggttgatg atcttatggc taaaggaatg       540
     aaaaacgctc aaaacgctat actctccggt tgttcagctg gagcattggc tgcgattctt       600
     cattgtgaca ctttccgtgc catacttccc cgaacagcta gcgtcaaatg tgtttctgat       660
     gccggttact ttatccacgg taaagatatc acaggaggat catacattca atcatattac       720
     agcaaagtcg tcgcactcca cggatctgca aagagtcttc ctgtttcttg tacctcaaaa       780
     atgaaaccag aactctgttt cttcccgcaa tacgtcgttc cttccatgcg aacaccgctc       840
     tttgtcatca atgccgcttt tgattcttgg cagatcaaga acgttttggc tccaactgct       900
     gttgataagg gaaaagagtg gaagaattgt aagcttgatc ttaagaaatg tagtgccgct       960
     cagctcaaaa ccgtccaagg gtttagagat cagatgatgc gagcattgtc accggttcac      1020
     agtacaccgt ctagaggatt gttcttagac tcgtgtcacg ctcattgcca aggaggaagc      1080
     gccgcctctt ggtccggtga caaaggtccc caagtcgcca atacgagaat tgcgaaagca      1140
     gtcggaaact ggttttatgg ccggagtgca tttcagaaga tagattgtcc gtcgccgact      1200
     tgtaatccta cttgtcctgc tatctctact gaagactaga atcatctcta aatgttcaat      1260
     tttttttaat ttgaaattga aagagctcgc aaacattttg gatttgtttt ccaaatcgga      1320
     tcaataataa tcactgcaat ttgaataaag agtatatctt t                          1361
//
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