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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY052671; SV 1; linear; mRNA; STD; PLN; 1509 BP.
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AC   AY052671;
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DT   06-SEP-2001 (Rel. 69, Created)
DT   06-SEP-2001 (Rel. 69, Last updated, Version 1)
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DE   Arabidopsis thaliana At2g46930/F14M4.24 mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1509
RA   Cheuk R., Chen H., Kim C.J., Koesema E., Meyers M.C., Banh J., Bowser L.,
RA   Carninci P., Dale J.M., Goldsmith A.D., Hayashizaki Y., Ishida J.,
RA   Jiang P.X., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B.,
RA   Lee J.M., Lin J., Liu S.X., Miranda M., Narusaka M., Nguyen M.,
RA   Onodera C.S., Palm C.J., Pham P.K., Quach H.L., Sakurai T., Satou M.,
RA   Seki M., Southwick A., Tang C.C., Toriumi M., Yamada K., Yamamura Y.,
RA   Yu G., Yu S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   "Arabidopsis cDNA clones";
RL   Unpublished.
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RN   [2]
RP   1-1509
RA   Cheuk R., Chen H., Kim C.J., Koesema E., Meyers M.C., Banh J., Bowser L.,
RA   Carninci P., Dale J.M., Goldsmith A.D., Hayashizaki Y., Ishida J.,
RA   Jiang P.X., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B.,
RA   Lee J.M., Lin J., Liu S.X., Miranda M., Narusaka M., Nguyen M.,
RA   Onodera C.S., Palm C.J., Pham P.K., Quach H.L., Sakurai T., Satou M.,
RA   Seki M., Southwick A., Tang C.C., Toriumi M., Yamada K., Yamamura Y.,
RA   Yu G., Yu S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   ;
RL   Submitted (17-AUG-2001) to the EMBL/GenBank/DDBJ databases.
RL   Salk Institute Genomic Analysis Laboratory (SIGnAL), Plant Biology
RL   Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey
RL   Pines Road, La Jolla, CA 92037, USA
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CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA') :  Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P.,  Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Cheuk,R., Chen,H.,
CC   Kim,C.J., Koesema,E., Meyers,M.C., Shinn,P., Banh,J. Bowser,L.,
CC   Dale,J.M., Goldsmith,A.D., Jiang,P.X., Jones,T., Karlin-Neumann,G.,
CC   Lam,B., Lee,J.M., Lin,J., Liu,S.X., Miranda,M., Nguyen,M.,
CC   Onodera,C.S., Palm,C.J., Pham,P.K., Quach,H.L., Southwick,A.,
CC   Tang,C.C., Toriumi,M., Yamada,K., Yamamura, Y., Yu,G., Yu,S.,
CC   Davis,R.W.,  Theologis,A., and Ecker,J.R.
CC   Cheuk,R. (SSP/Salk) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Ecker,J.R. (SSP/Salk)
CC   contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1509
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="2"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL06-75-B19(R13750)"
FT                   /note="ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   5'UTR           1..106
FT   CDS             107..1357
FT                   /codon_start=1
FT                   /product="At2g46930/F14M4.24"
FT                   /note="putative pectinesterase"
FT                   /db_xref="InterPro:IPR004963"
FT                   /db_xref="UniProtKB/TrEMBL:O80731"
FT                   /protein_id="AAK96575.1"
FT                   /translation="MKSVLRIAAAIFWLWLFIVLGVIGSGNVRDTDDEISLLESQLVVT
FT                   SPSQLLMVPLTLIQAAASKGAVCLDGTLPGYHLHPGSGSGANRWLIQLEGGGWCNTRRS
FT                   CIFRKTTRRGSSNHMEKVLAFTGILSNKSNENPDFFNWNRVKLRYCDGASFTGDSQDES
FT                   SQLYYRGQRIWHSAMEELLSKGMQKAEQALLSGCSAGGLASILHCDQFKELFPGTTTVK
FT                   CLSDAGMFMDAVDVSGGHSLRKMFQGVVTVQNLQKELSTACTKHLDPTSCFFPQNLVSG
FT                   IKTPMFLLNAAYDAWQVQESLAPPSVDLSGSWKACKSDHSHCNSSQIQFFQDFRTHMVD
FT                   AVKSFATSTHNGVFINSCFAHCQSERQDTWYAPDSPTLHGKTVAESVGDWYFDRTTVKA
FT                   IDCPYPCDKTCHNLIFK"
FT   3'UTR           1358..1509
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SQ   Sequence 1509 BP; 406 A; 340 C; 335 G; 428 T; 0 other;
     tctcgctatc aatcacacac atgcaacagt acaagatttg tcagagtcca cagaaatcga        60
     tcttttcgag tcaagatttt cagctctgtt caggactccg gcggagatga agagtgtgtt       120
     gcgtattgcg gcggcgatat tctggctttg gctgtttatc gtgttaggtg tgattgggag       180
     tgggaatgtg agagatacag acgatgagat ctcgttactc gaaagtcaat tggtggtgac       240
     atctccgtcg cagcttctta tggtgcctct cactttgatt caggctgctg cctccaaagg       300
     agctgtgtgc ctggatggaa cactacctgg ttatcatcta caccctggtt ctggatcagg       360
     agctaaccgg tggctcatcc aactcgaggg tggaggatgg tgcaacacac gtaggagctg       420
     tatcttccgg aaaaccactc gccgtggttc atcaaatcat atggagaaag ttttggcctt       480
     cactggaata ttgagcaata aatctaatga gaatcctgac ttcttcaact ggaacagagt       540
     caaattgcgt tactgcgatg gtgcctcttt caccggcgat agtcaggatg agagctcaca       600
     actttactat agaggacaac gaatctggca ttcagctatg gaagaactac tctctaaagg       660
     catgcaaaaa gcagaacagg ctctactttc tggatgttca gctgggggat tagcttccat       720
     cctacactgc gatcagttca aggaactatt tccgggcact acgacagtga aatgcttaag       780
     tgatgctgga atgtttatgg atgcagtgga tgtctctggg ggccactcgc tccggaaaat       840
     gttccaaggt gttgttacag tacagaacct ccaaaaggaa ctgtccactg cttgtacaaa       900
     gcatttggat ccaacttcgt gcttctttcc ccagaacttg gtttcaggca ttaagactcc       960
     aatgtttctt ctcaatgcag catatgacgc ttggcaggta caagagagtt tagctccacc      1020
     atcagttgac ctaagcggct cttggaaggc atgcaaatct gatcactcgc attgtaattc      1080
     atctcagatc cagttcttcc aagacttcag gactcatatg gtagatgctg taaagtcttt      1140
     cgcgacatcg acacataacg gtgtgttcat aaactcatgc ttcgctcact gccaatctga      1200
     aagacaggac acttggtatg caccagattc tcctactctt catggcaaga ccgttgctga      1260
     atctgttggt gattggtact ttgacagaac aacagtgaaa gccattgact gtccttaccc      1320
     ctgtgacaaa acatgtcaca atctcatctt caagtgagat gacaaatgac atatactctt      1380
     caaactcaaa cagcttactt gattcttata ccatactacc attagtaaca acaattcctg      1440
     aaaaaccgca tttcatcttt tacataatat gtgctatttt gactcaaata aagttagttt      1500
     ttcgtgtgt                                                              1509
//
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