EBI Dbfetch

ID   AY052315; SV 1; linear; mRNA; STD; PLN; 1971 BP.
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AC   AY052315;
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DT   06-SEP-2001 (Rel. 69, Created)
DT   16-APR-2005 (Rel. 83, Last updated, Version 2)
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DE   Arabidopsis thaliana AT4g17090/dl4575c mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1971
RA   Shinn P., Chen H., Cheuk R., Kim C.J., Koesema E., Meyers M.C., Banh J.,
RA   Bowser L., Carninci P., Dale J.M., Goldsmith A.D., Hayashizaki Y.,
RA   Ishida J., Jiang P.X., Jones T., Kamiya A., Karlin-Neumann G., Kawai J.,
RA   Lam B., Lee J.M., Lin J., Liu S.X., Miranda M., Narusaka M., Nguyen M.,
RA   Onodera C.S., Palm C.J., Pham P.K., Quach H.L., Sakurai T., Satou M.,
RA   Seki M., Southwick A., Tang C.C., Toriumi M., Yamada K., Yamamura Y.,
RA   Yu G., Yu S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   "Arabidopsis cDNA clones";
RL   Unpublished.
XX
RN   [2]
RP   1-1971
RA   Shinn P., Chen H., Cheuk R., Kim C.J., Koesema E., Meyers M.C., Banh J.,
RA   Bowser L., Carninci P., Dale J.M., Goldsmith A.D., Hayashizaki Y.,
RA   Ishida J., Jiang P.X., Jones T., Kamiya A., Karlin-Neumann G., Kawai J.,
RA   Lam B., Lee J.M., Lin J., Liu S.X., Miranda M., Narusaka M., Nguyen M.,
RA   Onodera C.S., Palm C.J., Pham P.K., Quach H.L., Sakurai T., Satou M.,
RA   Seki M., Southwick A., Tang C.C., Toriumi M., Yamada K., Yamamura Y.,
RA   Yu G., Yu S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   ;
RL   Submitted (17-AUG-2001) to the EMBL/GenBank/DDBJ databases.
RL   Salk Institute Genomic Analysis Laboratory (SIGnAL), Plant Biology
RL   Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey
RL   Pines Road, La Jolla, CA 92037, USA
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CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA') :  Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P.,  Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Shinn,P., Chen,H.,
CC   Cheuk,R., Kim,C.J., Koesema,E., Meyers,M.C., Banh,J. Bowser,L.,
CC   Dale,J.M., Goldsmith,A.D., Jiang,P.X., Jones,T., Karlin-Neumann,G.,
CC   Lam,B., Lee,J.M., Lin,J., Liu,S.X., Miranda,M., Nguyen,M.,
CC   Onodera,C.S., Palm,C.J., Pham,P.K., Quach,H.L., Southwick,A.,
CC   Tang,C.C., Toriumi,M., Yamada,K., Yamamura, Y., Yu,G., Yu,S.,
CC   Davis,R.W.,  Theologis,A., and Ecker,J.R.
CC   Shinn,P. (SSP/Salk) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Ecker,J.R. (SSP/Salk)
CC   contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1971
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="4"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL06-73-F20(R13698)"
FT                   /note="ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   5'UTR           1..84
FT   CDS             85..1215
FT                   /codon_start=1
FT                   /product="AT4g17090/dl4575c"
FT                   /note="probable beta-amylase"
FT                   /db_xref="GOA:Q941A5"
FT                   /db_xref="HSSP:1BYB"
FT                   /db_xref="InterPro:IPR013781"
FT                   /db_xref="UniProtKB/TrEMBL:Q941A5"
FT                   /protein_id="AAK96508.1"
FT                   /translation="MELTLNSSSSLIKRKDAKSSRNQESSSNNMTFAKMKPPTYQFQAK
FT                   NSVKEMKFTHEKTFTPEGETLEKWEKLHVLSYPHSKNDASVPVFVMLPLDTVTMSGHLN
FT                   KPRAMNASLMALKGAGVEGVMVDAWWGLVEKDGPMNYNWEGYAELIQMVQKHGLKLQVV
FT                   MSFHQCGGNVGDSCSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDSVPVLRGR
FT                   TPIQVYSDFMRSFRERFEGYIGGVIAEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQ
FT                   CYDKYMKSSLQAYAESIGKTNWGTSGPHDAGEYKNLPEDTEFFRRDGTWNSEYGKFFME
FT                   WYSGKLLEHGDQLLSSAKGIFQGSGAKLSGKVAGIH"
FT   3'UTR           1216..1971
XX
SQ   Sequence 1971 BP; 634 A; 404 C; 475 G; 458 T; 0 other;
     aaacacaaac atatcttcta tcaaacacca acagctctat tctctacctc atttctcatc        60
     ataacaaaga gagagaaaaa aactatggaa ttgacactga attcctcgag ttctcttatc       120
     aaacgtaaag atgccaagag ttctagaaac caagaaagtt cctccaacaa catgaccttt       180
     gcgaagatga agccgccaac atatcaattc caagcaaaga actcggttaa ggaaatgaag       240
     ttcactcacg agaagacctt cacgccagaa ggtgaaaccc ttgagaaatg ggagaagctc       300
     cacgttctct catacccaca ctccaagaac gacgctagcg ttccggtgtt cgtcatgtta       360
     ccgctcgaca cagtaacaat gtcagggcat ttgaacaaac cacgagccat gaacgctagt       420
     ttgatggccc tgaaaggagc tggtgtggaa ggtgtgatgg tggatgcttg gtggggattg       480
     gtggagaaag atggacctat gaattataac tgggaaggct atgccgagct tatacagatg       540
     gttcaaaagc acggtctcaa actccaggtc gttatgtcat tccatcaatg tggaggaaac       600
     gtaggagact cttgcagtat ccccttgcct ccatgggtgc ttgaagagat cagcaagaac       660
     cctgatcttg tctacacaga caaatctggg agaaggaacc ctgaatatat ctccttggga       720
     tgtgattctg tgcctgtcct aagaggaaga acacctatcc aggtctactc agatttcatg       780
     aggagcttcc gtgaacgatt tgaaggctac ataggaggag ttattgcgga aattcaagta       840
     ggaatgggac cttgtggaga attgagatac ccatcatacc ctgagagcaa cgggacctgg       900
     agattccccg gaattggaga gttccagtgc tacgacaagt atatgaaatc gtcacttcaa       960
     gcatatgctg agtcaatcgg gaaaactaac tggggaacaa gtggacctca tgatgccggc      1020
     gagtacaaga acctcccaga agatactgaa tttttcagga gagacggaac atggaatagc      1080
     gagtatggaa agtttttcat ggaatggtac tccgggaagc tgctagaaca tggagaccaa      1140
     ctcctatctt cagcgaaagg tatctttcaa ggaagcggag caaagctatc aggaaaggta      1200
     gctggaattc actagcacta caacaccagg tcacacgcag ctgagctaac cgctggatac      1260
     tacaacacaa gaaaccatga cgggtatctg ccaatagcta agatgttcaa caaacatgga      1320
     gttgtgctca acttcacctg catggagatg aaagacgggg agcaacctga gcacgcgaat      1380
     tgctcaccag aaggtctggt caagcaagta cagaacgcga caaggcaggc cggaaccgaa      1440
     ctagcagggg agaacgcgct agaacgatat gactcaagcg cattcggaca agtggtagca      1500
     acaaataggt cagattctgg aaatgggtta accgcattta cttacctaag aatgaacaag      1560
     cggttatttg agggtcaaaa ttggcagcag ttagtggagt ttgttaagaa catgaaggaa      1620
     ggtggtcatg ggaggagact ctcaaaagaa gacacaactg gaagtgacct ttatgttgga      1680
     tttgtcaaag gcaagatcgc tgagaatgtg gaggaggctg ctttagtgta atttcccaca      1740
     taggtacata catatagtgt ggtgtttatt gtattcctgt ctgataaata actagagaga      1800
     tcaaaccagt aagagtgtta aagctataga tttgcacaat tctgggtcag agtcagagca      1860
     aagagaagca aaatcaagat gatgtacact tagatgtttc ctatgagttt tccttgtaca      1920
     tcatcttcat actcttaatc tcaaatacta tgcatttttc tcctaaaaaa c               1971
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