EBI Dbfetch

ID   AY052200; SV 1; linear; mRNA; STD; PLN; 2002 BP.
XX
AC   AY052200;
XX
DT   10-SEP-2001 (Rel. 69, Created)
DT   10-SEP-2001 (Rel. 69, Last updated, Version 1)
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DE   Arabidopsis thaliana AT4g23490/F16G20_190 mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-2002
RA   Cheuk R., Chen H., Kim C.J., Koesema E., Meyers M.C., Banh J., Bowser L.,
RA   Carninci P., Dale J.M., Goldsmith A.D., Hayashizaki Y., Ishida J.,
RA   Jiang P.X., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B.,
RA   Lee J.M., Lin J., Liu S.X., Miranda M., Narusaka M., Nguyen M.,
RA   Onodera C.S., Palm C.J., Pham P.K., Quach H.L., Sakurai T., Satou M.,
RA   Seki M., Southwick A., Tang C.C., Toriumi M., Yamada K., Yamamura Y.,
RA   Yu G., Yu S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   "Arabidopsis cDNA clones";
RL   Unpublished.
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RN   [2]
RP   1-2002
RA   Cheuk R., Chen H., Kim C.J., Koesema E., Meyers M.C., Banh J., Bowser L.,
RA   Carninci P., Dale J.M., Goldsmith A.D., Hayashizaki Y., Ishida J.,
RA   Jiang P.X., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., Lam B.,
RA   Lee J.M., Lin J., Liu S.X., Miranda M., Narusaka M., Nguyen M.,
RA   Onodera C.S., Palm C.J., Pham P.K., Quach H.L., Sakurai T., Satou M.,
RA   Seki M., Southwick A., Tang C.C., Toriumi M., Yamada K., Yamamura Y.,
RA   Yu G., Yu S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   ;
RL   Submitted (16-AUG-2001) to the EMBL/GenBank/DDBJ databases.
RL   Salk Institute Genomic Analysis Laboratory (SIGnAL), Plant Biology
RL   Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey
RL   Pines Road, La Jolla, CA 92037, USA
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CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA') :  Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P.,  Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Cheuk,R., Chen,H.,
CC   Kim,C.J., Koesema,E., Meyers,M.C., Shinn,P., Banh,J. Bowser,L.,
CC   Dale,J.M., Goldsmith,A.D., Jiang,P.X., Jones,T., Karlin-Neumann,G.,
CC   Lam,B., Lee,J.M., Lin,J., Liu,S.X., Miranda,M., Nguyen,M.,
CC   Onodera,C.S., Palm,C.J., Pham,P.K., Quach,H.L., Southwick,A.,
CC   Tang,C.C., Toriumi,M., Yamada,K., Yamamura, Y., Yu,G., Yu,S.,
CC   Davis,R.W.,  Theologis,A., and Ecker,J.R.
CC   Cheuk,R. (SSP/Salk) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Ecker,J.R. (SSP/Salk)
CC   contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2002
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="4"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL06-78-E03(R13566)"
FT                   /note="ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   5'UTR           1..273
FT   CDS             274..1854
FT                   /codon_start=1
FT                   /product="AT4g23490/F16G20_190"
FT                   /note="unknown protein"
FT                   /db_xref="InterPro:IPR006740"
FT                   /db_xref="UniProtKB/TrEMBL:Q941F0"
FT                   /protein_id="AAK97671.1"
FT                   /translation="MKGNQKDSSEKPIWDRSSSSTSIPGMWSLTRPGPKLMVWLICFIV
FT                   FTYIIYMLKLVSTSRSCDDSTSFTTVSALSTNVSSNVSSLSTSLASRRRNWEEEEEDTV
FT                   VDKLTDLNHVVFGIAASSKLWKQRKEYIKIWYKQKRMRGYVWLDKEVKKSLSDDDDEKL
FT                   LPPVKISGGTASFPYTNKQGQRSALRISRIVSETLRLGPKNVRWFVMGDDDTVFVIDNL
FT                   IRVLRKYDHEQMYYIGSLSESHLQNIFFSYGMAYGGGGFAISYPLAKALSKMQDRCIQR
FT                   YPALYGSDDRMQACMAELGVPLTKELGFHQYDVYGNLFGLLAAHPVTPFVSMHHLDVVE
FT                   PIFPNMTRVRALKKITEPMKLDSAGLLQQSICYDKHKSWTISVSWGYAVQIFRGIFSPR
FT                   EMEMPSRTFLNWYKRADYTAYAFNTRPVSRNPCQKPFVFYMSSTKFDQQLNTTVSEYTI
FT                   HRVSHPSCRWKMTNPAEINTIVVYKKPDPHLWERSPRRNCCRVLQTKRNNTLWINVGVC
FT                   RAGEVTEVK"
FT   3'UTR           1855..2002
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SQ   Sequence 2002 BP; 540 A; 421 C; 439 G; 602 T; 0 other;
     aaaaaaaaaa aaaaaaaaaa acttttgtct ttcccttaat ttctctaatt ttccctcgat        60
     ttctctggca tcaacagtct cattctcatt gatctttctt ttttgtagcg agaaagatcc       120
     atttttttcg gttcgttctc ttctgggtta cgaatcaaag agctacacag acacagacac       180
     acactgtttc ctgtttctcc ccggattgca aacagaacta gggtttgttt tcacaaattt       240
     tggatctttt ttttgaagaa aagaaaaatt tggatgaaag gaaaccagaa agactcgtcg       300
     gaaaaaccga tatgggatcg gagctcatca agtacatcta tacccggaat gtggtcttta       360
     acccgacccg gtccaaaact tatggtttgg cttatctgtt tcattgtctt cacttacatt       420
     atctacatgc ttaagcttgt ctctacctca cgctcctgtg acgattccac ttctttcacc       480
     accgtctctg ctctctccac aaacgtctct tcaaatgtct cgtctttatc cacctcctta       540
     gcttcacggc ggcgtaattg ggaggaggaa gaagaagaca cggtggtgga taagctgacg       600
     gatcttaacc acgtggtgtt tgggatcgct gcgtcgtcta agctatggaa acagaggaaa       660
     gagtatatca agatctggta taaacaaaaa cgcatgcgtg gctacgtttg gttagataaa       720
     gaggttaaaa agagtcttag tgatgatgat gacgaaaagc ttcttcctcc ggtgaaaatc       780
     tccggtggaa ctgcttcgtt tccttatact aacaaacaag gacaacgctc tgcgttacgg       840
     atctcgagga ttgtttctga aacgctgcgt ttaggtccga agaatgttag gtggtttgtg       900
     atgggtgatg atgatacggt gtttgttatt gataatttga ttagggtgtt gaggaagtat       960
     gaccatgagc agatgtatta cattgggagc ttgtcggaat ctcatttaca gaacatattt      1020
     ttctcgtatg gtatggctta tggtggaggt ggatttgcta taagctatcc attggctaaa      1080
     gctttgagta agatgcaaga tcggtgtata cagaggtatc ctgcattgta tggatcagat      1140
     gatcgcatgc aagcttgtat ggctgaactt ggtgttccac tcactaaaga actcggattt      1200
     caccagtacg acgtttacgg gaacctcttt ggccttctcg ctgcacaccc agtaacaccg      1260
     ttcgtctcga tgcaccacct cgacgtggtg gaaccgattt tccctaacat gacacgtgtc      1320
     cgcgccctca agaagattac cgaacctatg aagcttgact cagccgggct tctccagcag      1380
     tcgatatgct acgacaagca caagagctgg accatctcgg tctcttgggg ctacgcggtt      1440
     cagatttttc gcggaatatt ctctccccga gaaatggaaa tgccttctag aaccttcttg      1500
     aattggtaca aacgggcgga ttacactgct tacgctttca acactaggcc ggttagccgg      1560
     aacccgtgtc aaaaaccgtt tgtgttttac atgtcgagca cgaaattcga tcagcagctg      1620
     aacacgacgg ttagcgaata cacgatacac cgtgtttcac atccttcttg ccgatggaag      1680
     atgacaaacc cagctgagat taataccatc gtcgtctaca agaaacccga ccctcatcta      1740
     tgggaaaggt cacctaggag gaattgttgc agagtattac aaacaaagag gaataatacg      1800
     ttatggatca atgttggtgt atgtagagca ggtgaagtca ctgaagttaa gtaatttttt      1860
     aatatagttt atttttgtga aagggaagga aattagagtt tttttaggct gttttaccgc      1920
     tcttaatttc ttgccacgtt atttaaaatt tttattcatt gagatcccgc cctagttctt      1980
     ctctcagtat atgatcgttc at                                               2002
//