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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY051560; SV 1; linear; mRNA; STD; INV; 1475 BP.
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AC   AY051560;
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DT   27-AUG-2001 (Rel. 68, Created)
DT   28-AUG-2001 (Rel. 68, Last updated, Version 2)
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DE   Drosophila melanogaster GH20986 full length cDNA.
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KW   FLI_CDNA.
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OS   Drosophila melanogaster (fruit fly)
OC   Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera;
OC   Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea;
OC   Drosophilidae; Drosophila; Sophophora.
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RN   [1]
RP   1-1475
RA   Stapleton M., Brokstein P., Hong L., Agbayani A., Carlson J., Champe M.,
RA   Chavez C., Dorsett V., Farfan D., Frise E., George R., Gonzalez M.,
RA   Guarin H., Li P., Liao G., Miranda A., Mungall C.J., Nunoo J., Pacleb J.,
RA   Paragas V., Park S., Phouanenavong S., Wan K., Yu C., Lewis S.E.,
RA   Rubin G.M., Celniker S.;
RT   ;
RL   Submitted (10-AUG-2001) to the EMBL/GenBank/DDBJ databases.
RL   Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory,
RL   One Cyclotron Road, Berkeley, CA 94720, USA
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CC   Sequence submitted by:
CC   Berkeley Drosophila Genome Project
CC   Lawrence Berkeley National Laboratory
CC   Berkeley, CA 94720
CC   This clone was sequenced as part of a high-throughput process to
CC   sequence clones from Drosophila Gene Collection 1 (Rubin et al.,
CC   Science 2000). The sequence has been subjected to integrity checks
CC   for sequence accuracy, presence of a polyA tail and contiguity
CC   within 100 kb in the genome. Thus we believe the sequence to
CC   reflect accurately this particular cDNA clone.  However, there are
CC   artifacts associated with the generation of cDNA clones that may
CC   have not been detected in our initial analyses such as internal
CC   priming, priming from contaminating genomic DNA, retained introns
CC   due to reverse transcription of unspliced precursor RNAs, and
CC   reverse transcriptase errors that result in single base changes.
CC   For further information about this sequence, including its location
CC   and relationship to other sequences, please visit our Web site
CC   (http://fruitfly.berkeley.edu) or send email to
CC   cdna@fruitfly.berkeley.edu.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1475
FT                   /organism="Drosophila melanogaster"
FT                   /map="93D1-93D1"
FT                   /strain="y; cn bw sp"
FT                   /mol_type="mRNA"
FT                   /db_xref="taxon:7227"
FT   CDS             313..1251
FT                   /codon_start=1
FT                   /gene="CG5871"
FT                   /product="GH20986p"
FT                   /note="Longest ORF"
FT                   /db_xref="FLYBASE:FBgn0038870"
FT                   /db_xref="UniProtKB/TrEMBL:Q961J2"
FT                   /protein_id="AAK92984.1"
FT                   /translation="MWDISGALSLLNCYVKWLALGHFPQNTSSYTEGSYTWFSKGWKEA
FT                   FMSGDQEPWVFRGGLIADLQRLMPVDSGNDLFVYKLPEQPTANYYLLRPYCNSDEQQVN
FT                   DLCTRLYLQWRGELDGGRHIPFPLPANVPNIVADGLIGGYLTLSPQLCIVAYDESNRII
FT                   GYSCAALDVNIFRRNLELCWYTELREKYSRDICPLEGGEEVVQLVTSLVESYHDSSGNG
FT                   ALDQCPVEVSGSFPAVLISGTLREAEERDSGITKRMLTVLLAALRANGCFGAHVRVPQQ
FT                   DVAQVNFYSRIGFVDVYREEATKCIYMGRRF"
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SQ   Sequence 1475 BP; 333 A; 379 C; 397 G; 366 T; 0 other;
     atcgaaggcg aaggaataac cgttgacgat ttggttcttc tctgcgacct gttctatctg        60
     cccttcgaac atggcagtcg cggccacaag ctgctcgtgg aattcaactg gctgaagggc       120
     aacgctaatg tgatactgca ggaccggtct gccggcggcg gaggcgatgc aattaaatca       180
     gacaagccgg aggttagcga gtggcaccag cgtcgcgagc agttcgacca actctgcagt       240
     gctgtagtag agctcctaat taagatcgcc aattgcccga acaaggagat ttgccacgag       300
     ctgtactcgt atatgtggga catctccggc gccctatctc tgctcaattg ctatgttaag       360
     tggctggctc tcggccattt cccgcaaaat acgtcttcct acacagaggg cagctacaca       420
     tggtttagca agggctggaa ggaggcgttc atgtctggtg atcaggagcc gtgggtcttt       480
     agaggcggcc tcattgccga cctgcaacgc ctgatgcctg tggactcggg caacgacctg       540
     ttcgtgtaca agcttccgga acagcccacg gccaactact atctcttgag accttactgc       600
     aattcggacg aacagcaagt caacgatttg tgcactcgcc tgtatttgca gtggcgggga       660
     gagctggacg gaggcaggca cattccgttc ccgctgccgg cgaatgtgcc aaacattgtg       720
     gcggatgggc tgatcggtgg atatctcacc ctcagtccgc aactgtgcat tgtggcctac       780
     gacgagagta accgtatcat tggatattca tgcgccgccc tggatgtcaa catatttcga       840
     cgcaacctgg agctgtgctg gtacacggaa ctgcgtgaga agtactctag agatatttgt       900
     ccactggagg gtggcgagga ggttgtacag ctcgtcacct cccttgtgga gagttatcat       960
     gacagcagcg gtaacggggc tctggaccag tgtcccgtag aggtgagcgg ctccttccct      1020
     gccgtgttga tctccggaac tttgcgcgaa gcggaggagc gcgactcggg aataaccaag      1080
     cggatgctca ccgtacttct ggccgccctg cgtgcgaacg gctgctttgg tgctcacgtt      1140
     cgcgttccgc aacaagatgt cgcccaggtg aacttttatt ccagaatcgg tttcgtggat      1200
     gtctatcgcg aggaggccac caagtgtatt tacatgggtc gccgtttcta gcgtagctgg      1260
     ttgccacctt cactgcctcc acttttaatg ttccttcatc tttggtattc cggctagcgg      1320
     tgctagctac tcacgtcatg tcctcgtcct ttttgtattc ccttgaggta taaagtttgt      1380
     ataactgacc aacccttcca gcatttatcg taagcattgt tttcttactg agaaaaacaa      1440
     taaaaatacc aatttaataa aaaaaaaaaa aaaaa                                 1475
//
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