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EBI DbfetchID AY050989; SV 1; linear; mRNA; STD; PLN; 1485 BP. XX AC AY050989; XX DT 27-AUG-2001 (Rel. 68, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 4) XX DE Arabidopsis thaliana unknown protein (At4g38040) mRNA, complete cds. XX KW FLI_CDNA. XX OS Arabidopsis thaliana (thale cress) OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; OC eurosids II; Brassicales; Brassicaceae; Arabidopsis. XX RN [1] RP 1-1485 RA Yamada K., Liu S.X., Sakano H., Pham P.K., Banh J., Chung M.K., RA Goldsmith A.D., Lee J.M., Quach H.L., Toriumi M., Yu G., Bowser L., RA Carninci P., Chen H., Cheuk R., Hayashizaki Y., Ishida J., Jones T., RA Kamiya A., Karlin-Neumann G., Kawai J., Kim C., Lam B., Lin J., Miranda M., RA Narusaka M., Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P., RA Southwick A., Shinozaki K., Davis R.W., Ecker J.R., Theologis A.; RT "Arabidopsis Full Length cDNA Clones"; RL Unpublished. XX RN [2] RP 1-1485 RA Yamada K., Liu S.X., Pham P.K., Banh J., Banno F., Dale J.M., RA Goldsmith A.D., Jiang P.X., Lee J.M., Onodera C.S., Quach H.L., Tang C.C., RA Toriumi M., Yamamura Y., Yu G., Yu S., Bowser L., Carninci P., Chen H., RA Cheuk R., Hayashizaki Y., Ishida J., Jones T., Kamiya A., RA Karlin-Neumann G., Kawai J., Kim C., Koesema E., Lam B., Lin J., RA Meyers M.C., Miranda M., Narusaka M., Nguyen M., Palm C.J., Sakurai T., RA Satou M., Seki M., Shinn P., Southwick A., Tracy S.E., Shinozaki K., RA Davis R.W., Ecker J.R., Theologis A.; RT ; RL Submitted (07-AUG-2001) to the EMBL/GenBank/DDBJ databases. RL Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA XX CC RIKEN Genomic Sciences Center (GSC) members carried out the CC collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN CC Arabidopsis Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J., CC Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J., CC Hayashizaki,Y. and Shinozaki,K. CC The Salk, Stanford, PGEC (SSP) Consortium members carried out the CC sequencing and annotation of the RAFL cDNAs: Yamada,K., Liu,S.X., CC Pham,P.K., Banh,J., Banno,F., Dale,J.M., Goldsmith,A.D., CC Jiang,P.X., Lee,J.M., Onodera,C.S., Quach,H.L., Tang,C.C., CC Toriumi,M., Yamamura,Y., Yu,G., Yu,S., Bowser,L., Chen,H., CC Cheuk,R., Jones,T., Karlin-Neumann,G., Kim,C., Koesema,E., Lam,B., CC Lin,J., Meyers,M.C., Miranda,M., Nguyen,M., Palm,C.J., Shinn,P., CC Southwick,A., Tracy,S.E., Davis,R.W., Ecker,J.R. and Theologis,A. CC Yamada,K. (SSP/PGEC) and Seki,M. (RIKEN GSC) contributed equally to CC this work. Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP/PGEC) CC contributed equally to this work as PIs. CC Annotation is based on the January 2002 version of the Arabidopsis CC genome submitted to GenBank. XX FH Key Location/Qualifiers FH FT source 1..1485 FT /organism="Arabidopsis thaliana" FT /chromosome="4" FT /mol_type="mRNA" FT /clone="RAFL07-10-E12 (R10875)" FT /note="This clone is in a modified pBluescript vector FT (FLC-1) as a BamHI/XhoI insert. ecotype: Columbia" FT /db_xref="taxon:3702" FT 5'UTR 1..21 FT /gene="At4g38040" FT CDS 22..1299 FT /codon_start=1 FT /gene="At4g38040" FT /product="unknown protein" FT /db_xref="GOA:Q9SZK4" FT /db_xref="InterPro:IPR004263" FT /db_xref="UniProtKB/TrEMBL:Q9SZK4" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAK93666.1" FT /translation="MTIVKPSQFSFSGGGSSPLCSLKSSLLTVAILTFISLFYLSLNSL FT RTSPPSPVIVVTPIHVPHTFVNEYKTDNETPTMEEETYSDVYHSPEAFRLNYAEMEKRF FT KVYIYPDGDPNTFYQTPRKVTGKYASEGYFFQNIRESRFRTLDPDEADLFFIPISCHKM FT RGKGTSYENMTVIVQNYVDGLIAKYPYWNRTLGADHFFVTCHDVGVRAFEGSPLLIKNT FT IRVVCSPSYNVGFIPHKDVALPQVLQPFALPAGGNDVENRTTLGFWAGHRNSKIRVILA FT HVWENDTELDISNNRINRATGHLVYQKRFYRTKFCICPGGSQVNSARITDSIHYGCIPV FT ILSDYYDLPFNDILNWRKFAVVLREQDVYNLKQILKNIPHSEFVSLHNNLVKVQKHFQW FT NSPPVKFDAFHMIMYELWLRHHVVKY" FT misc_difference 297 FT /gene="At4g38040" FT /replace="t" FT /note="compared to genomic sequence" FT 3'UTR 1300..1485 FT /gene="At4g38040" XX SQ Sequence 1485 BP; 422 A; 333 C; 287 G; 443 T; 0 other; agcttcagat ccgaccaaac aatgacgatc gttaaaccgt cgcagttctc attctccggc 60 ggcggatctt cgccgttatg ttcactcaaa agctcactcc tcaccgtcgc tattctcact 120 ttcatttccc tcttctacct ctctctcaat tccttacgca cttcgccgcc gtctcctgtc 180 atcgtggtaa caccgattca tgttcctcat accttcgtga atgagtataa gactgataac 240 gaaacaccga cgatggaaga agaaacctac tccgatgttt atcactcacc ggaggcattc 300 cgattgaatt acgccgagat ggagaagaga ttcaaggttt atatttatcc cgacggcgat 360 ccaaatacgt tttatcaaac gccgaggaaa gtcaccggta aatacgctag tgaggggtac 420 ttcttccaga acattagaga gagtcgattt cgaaccctag atccagatga agcagatctc 480 ttcttcattc caatctcttg tcacaagatg cgaggcaaag gaacatcata tgaaaatatg 540 actgtgattg ttcaaaacta tgttgatgga ttgatagcta agtatcctta ttggaataga 600 actttaggag cagatcactt ctttgttaca tgtcatgatg ttggtgttag agcatttgag 660 ggatctccgc ttctgattaa gaatactatt agggttgtgt gctcacctag ctacaatgtt 720 ggtttcattc ctcacaaaga tgttgctttg cctcaagttc ttcagccatt tgctctccct 780 gctggtggaa atgatgttga gaatcggacg actcttggtt tttgggctgg tcatcgaaat 840 tctaagatac gggttatact tgctcatgtg tgggaaaacg acacagagct tgatatttca 900 aacaacagaa ttaacagagc tacagggcat ttggtgtatc agaagagatt ctaccggact 960 aaattctgca tatgccctgg tggttctcaa gtaaacagcg ctcgcataac ggactcgatc 1020 cattacggat gtattcctgt catattatca gactactacg acctcccttt caacgacatc 1080 ctgaattggc gaaaatttgc ggttgtactc agagagcaag atgtctataa ccttaagcag 1140 atcctcaaga acatacctca ctcagagttt gtttcgttgc ataacaactt ggtcaaggtg 1200 cagaagcatt ttcaatggaa ctcacctcca gtcaaattcg acgcatttca catgatcatg 1260 tatgaactat ggttacgcca ccatgtcgtc aagtactgat ccaagacttt ttttttttgt 1320 tttttttcct tcttcaaccg cgtagatacg gtcccaagcc aaaaaaagct agcatgtaca 1380 cctcttgtaa gttttaaata tcatagctta tgacagtaac acggaacatc aacatttcat 1440 tctttgagga aaattcatta tttttgtgta aaaaaaaaaa aaaaa 1485 // |
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