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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY050837; SV 1; linear; mRNA; STD; PLN; 1716 BP.
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AC   AY050837;
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DT   27-AUG-2001 (Rel. 68, Created)
DT   14-NOV-2006 (Rel. 89, Last updated, Version 4)
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DE   Arabidopsis thaliana putative glycosylation enzyme (At1g03520) mRNA,
DE   complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1716
RA   Yamada K., Liu S.X., Sakano H., Pham P.K., Banh J., Chung M.K.,
RA   Goldsmith A.D., Lee J.M., Quach H.L., Toriumi M., Yu G., Bowser L.,
RA   Carninci P., Chen H., Cheuk R., Hayashizaki Y., Ishida J., Jones T.,
RA   Kamiya A., Karlin-Neumann G., Kawai J., Kim C., Lam B., Lin J., Miranda M.,
RA   Narusaka M., Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P.,
RA   Southwick A., Shinozaki K., Davis R.W., Ecker J.R., Theologis A.;
RT   "Arabidopsis Full Length cDNA Clones";
RL   Unpublished.
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RN   [2]
RP   1-1716
RA   Yamada K., Liu S.X., Pham P.K., Banh J., Banno F., Dale J.M.,
RA   Goldsmith A.D., Jiang P.X., Lee J.M., Onodera C.S., Quach H.L., Tang C.C.,
RA   Toriumi M., Yamamura Y., Yu G., Yu S., Bowser L., Carninci P., Chen H.,
RA   Cheuk R., Hayashizaki Y., Ishida J., Jones T., Kamiya A.,
RA   Karlin-Neumann G., Kawai J., Kim C., Koesema E., Lam B., Lin J.,
RA   Meyers M.C., Miranda M., Narusaka M., Nguyen M., Palm C.J., Sakurai T.,
RA   Satou M., Seki M., Shinn P., Southwick A., Tracy S.E., Shinozaki K.,
RA   Davis R.W., Ecker J.R., Theologis A.;
RT   ;
RL   Submitted (08-AUG-2001) to the EMBL/GenBank/DDBJ databases.
RL   Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA
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CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Yamada,K., Liu,S.X.,
CC   Pham,P.K., Banh,J., Banno,F., Dale,J.M., Goldsmith,A.D.,
CC   Jiang,P.X., Lee,J.M., Onodera,C.S., Quach,H.L., Tang,C.C.,
CC   Toriumi,M., Yamamura,Y., Yu,G., Yu,S., Bowser,L., Chen,H.,
CC   Cheuk,R., Jones,T., Karlin-Neumann,G., Kim,C., Koesema,E., Lam,B.,
CC   Lin,J., Meyers,M.C., Miranda,M., Nguyen,M., Palm,C.J., Shinn,P.,
CC   Southwick,A., Tracy,S.E., Davis,R.W., Ecker,J.R. and Theologis,A.
CC   Yamada,K. (SSP/PGEC) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP/PGEC)
CC   contributed equally to this work as PIs.
CC   Annotation is based on the January 2002 version of the Arabidopsis
CC   genome submitted to GenBank.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1716
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="1"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL08-14-J07 (R11159)"
FT                   /note="This clone is in a modified pBluescript vector
FT                   (FLC-1) as a BamHI/XhoI insert. ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   5'UTR           1..270
FT                   /gene="At1g03520"
FT   misc_difference 2
FT                   /gene="At1g03520"
FT                   /replace="t"
FT                   /note="compared to genomic sequence"
FT   CDS             271..1614
FT                   /codon_start=1
FT                   /gene="At1g03520"
FT                   /product="putative glycosylation enzyme"
FT                   /db_xref="GOA:Q9LR71"
FT                   /db_xref="InterPro:IPR003406"
FT                   /db_xref="UniProtKB/TrEMBL:Q9LR71"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT                   /protein_id="AAK92772.1"
FT                   /translation="MRKLYRKLVSFRDPFARVKRHVSSHSGFRAFSDRKWLFPFLASLI
FT                   MSITLLILLISGQFDNFFGEEDQLPVDVVSESNDYFVESDFKQSMNSTADVNPEPPRLA
FT                   YLISGTKGDSHRMMRTLQAVYHPRNQYVLHLDLEAPPRERMELAMSVKTDPTFREMENV
FT                   RVMAQSNLVTYKGPTMIACTLQAVSILLRESLHWDWFLNLSASDYPLVTQDDLLYVFSN
FT                   LSRNVNFIENMQLTGWKLNQRAKSIIVDPALYLSKKSDIAWTTQRRSLPNSFRLFTGSA
FT                   WIMLTRSFLEYCIWGWDNFPRTILMYYTNFVSSPEGYFHTVICNSKEFINTAIGHDLHY
FT                   IAWDSPPKQHPRSLSLKDFDNMVKSKAPFARKFHKNDPALDKIDKELLGRTHRFAPGGW
FT                   CVGSSANGNDQCSVQGDDSVLKPGPGSERLQELVQTLSSEEFRRKQCS"
FT   3'UTR           1615..1716
FT                   /gene="At1g03520"
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SQ   Sequence 1716 BP; 474 A; 335 C; 361 G; 546 T; 0 other;
     tggctttcgc ctttggattg ttgattccct agtggatgtt ctttatctct ttaaaaaggt        60
     cctctctttt aaatcaattt ttgctgaact tgcccaattc ggaaactttg ttgcaagtct       120
     cctcttggtc tctggtaatc gttttcgcat caatccttat attgatttga atctgtaatc       180
     agattcgatc tttgatgcta atttggtatt ctatagaaga caacatatct gaattgggtt       240
     tcttcgttgg ataggataag tggttaggga atgagaaaat tgtataggaa gctggtttca       300
     ttcagagacc catttgctag ggtcaagaga catgttagtt cacattcagg gtttagagct       360
     ttcagcgaca gaaaatggtt gttccctttt ctagctagct tgatcatgtc cattactctt       420
     ctgattttgt taatttctgg ccaattcgac aacttctttg gggaagaaga tcaattacca       480
     gttgatgttg tttcagagtc taatgactac tttgtagaat cagatttcaa gcaatctatg       540
     aattcgacgg ctgatgttaa tccagagcct cctagattag cttatttaat atcgggaaca       600
     aaaggcgata gtcataggat gatgaggact ttacaagctg tgtaccatcc tagaaaccag       660
     tatgttctgc atttggatct tgaggctcca cctcgagaac ggatggagct ggccatgtcc       720
     gtgaagactg atccgacttt ccgtgaaatg gagaatgttc gtgtgatggc tcagtctaat       780
     cttgttactt ataaaggccc tacaatgatt gcttgtactc ttcaagccgt ttcaatcttg       840
     ctaagagaaa gcttacattg ggattggttt cttaacctta gtgcctcgga ttatcctcta       900
     gtaacacaag atgatttgtt gtatgtcttc tcaaatctgt ctcggaatgt caatttcatc       960
     gagaatatgc agctcaccgg atggaaactg aatcagaggg ctaaatcaat cattgttgat      1020
     cctgccctat acctatcgaa gaaatccgat atcgcttgga ctactcaacg gcgatcactt      1080
     ccaaattctt tcaggctatt cactggctca gcttggataa tgttgactcg gtctttcctc      1140
     gagtactgca tttggggatg ggataatttc ccaagaacaa tactaatgta ctacacaaat      1200
     ttcgtatctt ctcctgaagg atacttccac acagtaatct gcaacagcaa agagtttatc      1260
     aacactgcaa tcggtcacga ccttcactac attgcttggg acagtcctcc aaagcaacac      1320
     cctagatctc tctcgttgaa ggattttgac aatatggtca agagcaaagc tccatttgca      1380
     cgcaagttcc acaaaaacga tcctgcgtta gacaagatcg ataaagagct attgggacgg      1440
     acacaccggt ttgcaccagg aggatggtgt gtcgggagtt cagctaatgg caatgatcag      1500
     tgctctgtgc aaggtgacga ctcggtgttg aaaccaggac ctggttctga gaggttgcag      1560
     gagcttgttc aaacactttc ctctgaagaa tttaggcgaa aacagtgttc ttgaagttat      1620
     ctactgatga cgcaaaatat aacgttgtac agtatattgt tttgtttgat tataaatttt      1680
     tggttataga aatttcttcg aaaaaaaaaa aaaaaa                                1716
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