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EBI DbfetchID AY050776; SV 1; linear; mRNA; STD; PLN; 1936 BP. XX AC AY050776; XX DT 27-AUG-2001 (Rel. 68, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 5) XX DE Arabidopsis thaliana putative mannosidase (At3g21160) mRNA, complete cds. XX KW FLI_CDNA. XX OS Arabidopsis thaliana (thale cress) OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; OC eurosids II; Brassicales; Brassicaceae; Arabidopsis. XX RN [1] RP 1-1936 RA Yamada K., Liu S.X., Sakano H., Pham P.K., Banh J., Chung M.K., RA Goldsmith A.D., Lee J.M., Quach H.L., Toriumi M., Yu G., Bowser L., RA Carninci P., Chen H., Cheuk R., Hayashizaki Y., Ishida J., Jones T., RA Kamiya A., Karlin-Neumann G., Kawai J., Kim C., Lam B., Lin J., Miranda M., RA Narusaka M., Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P., RA Southwick A., Shinozaki K., Davis R.W., Ecker J.R., Theologis A.; RT "Arabidopsis Full Length cDNA Clones"; RL Unpublished. XX RN [2] RP 1-1936 RA Yamada K., Liu S.X., Pham P.K., Banh J., Dale J.M., Goldsmith A.D., RA Jiang P.X., Lee J.M., Onodera C.S., Quach H.L., Tang C.C., Toriumi M., RA Yamamura Y., Yu G., Yu S., Bowser L., Carninci P., Chen H., Cheuk R., RA Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G., RA Kawai J., Kim C., Koesema E., Lam B., Lin J., Meyers M.C., Miranda M., RA Narusaka M., Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P., RA Southwick A., Tracy S.E., Shinozaki K., Davis R.W., Ecker J.R., RA Theologis A.; RT ; RL Submitted (24-JUL-2001) to the EMBL/GenBank/DDBJ databases. RL Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA XX CC RIKEN Genomic Sciences Center (GSC) members carried out the CC collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN CC Arabidopsis Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J., CC Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J., CC Hayashizaki,Y. and Shinozaki,K. CC The Salk, Stanford, PGEC (SSP) Consortium members carried out the CC sequencing and annotation of the RAFL cDNAs: Yamada,K., Liu,S.X., CC Pham,P.K., Banh,J., Dale,J.M., Goldsmith,A.D., Jiang,P.X., CC Lee,J.M., Onodera,C.S., Quach,H.L., Tang,C.C., Toriumi,M., CC Yamamura,Y., Yu,G., Yu,S., Bowser,L., Chen,H., Cheuk,R., Jones,T., CC Karlin-Neumann,G., Kim,C., Koesema,E., Lam,B., Lin,J., Meyers,M.C., CC Miranda,M., Nguyen,M., Palm,C.J., Shinn,P., Southwick,A., CC Tracy,S.E., Davis,R.W., Ecker,J.R. and Theologis,A. CC Yamada,K. (SSP/PGEC) and Seki,M. (RIKEN GSC) contributed equally to CC this work. Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP/PGEC) CC contributed equally to this work as PIs. CC Annotation is based on the January 2002 version of the Arabidopsis CC genome submitted to GenBank. XX FH Key Location/Qualifiers FH FT source 1..1936 FT /organism="Arabidopsis thaliana" FT /chromosome="3" FT /mol_type="mRNA" FT /clone="RAFL07-11-C17 (R10793)" FT /note="This clone is in a modified pBluescript vector FT (FLC-1) as a BamHI/XhoI insert. ecotype: Columbia" FT /db_xref="taxon:3702" FT 5'UTR 1..82 FT /gene="At3g21160" FT CDS 83..1801 FT /codon_start=1 FT /gene="At3g21160" FT /product="putative mannosidase" FT /db_xref="GOA:Q94A04" FT /db_xref="HSSP:1FMI" FT /db_xref="InterPro:IPR001382" FT /db_xref="UniProtKB/TrEMBL:Q94A04" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAK92711.1" FT /translation="MARNKLVSGSHGIWKYFNPAFYLRRPRRLALLIILFVSVSMVVWD FT RQSLSRDYQFEVSKLNEEVLRLQQMLEEIKSVTEDVSVNSLKDVQEDPVDAQRMQRVKE FT AMVHAWSSHEKYAWGQDELQPQTKDGVDSFGGLGATMIDALDTLYIMGLDEQFQKAREW FT VASSLDFDKDYAASMFETTIRVVGGLLSAYDLSGDKIFLEKAMDIADRLLPAWDTQSGI FT PYNIINLKHGNAHNPTWAGGDSILADSGTEQLEFIALSQRTGDPKYQQKVEKVISVLNK FT NFPADGLLPIYINPDTANPSQSTITFGAMGDSFYEYLLKVWVFGNKTSAVKHYRDMWEK FT SMNGLLSLVKKSTPLSFTYICEKSGNSLIDKMDELACFAPGMLALGASGYSDPAEGKKF FT LTLAEELAWTCYNFYQSTPTKLAGENYFFNSGSDMSVGTSWNILRPETVESLFYLWRLT FT GNKTYQEWGWNIFEAFEKNSRIESGYVGLKDVNTGVKDNKMQSFFLAETLKYLYLLFSP FT TTVIPLDEWVFNTEAHPLKIKSRNDQVNLKQSNKVLLRKPAFRIRQRHYGRITKK" FT misc_difference 419 FT /gene="At3g21160" FT /replace="t" FT /note="compared to genomic sequence resulting in an amino FT acid sequence difference" FT 3'UTR 1802..1936 FT /gene="At3g21160" FT misc_difference 1920 FT /gene="At3g21160" FT /note="not present in genomic sequence" XX SQ Sequence 1936 BP; 585 A; 347 C; 456 G; 548 T; 0 other; aattcatggt ttcaatttct tcttcttctc ctttttcaaa aatttgtcac ctccgagatc 60 agatctgatc gtcggaattg agatggcgag gaataaactt gtaagtggta gtcatgggat 120 atggaaatat ttcaacccag cgttttatct ccgaagacca agacgtcttg ctttgctcat 180 catcctcttc gtctctgttt caatggttgt ttgggatcgt caatctcttt cccgagacta 240 ccagtttgaa gtttccaagt taaatgaaga agttttgcgg ttgcagcaga tgttggaaga 300 gataaagagc gtcactgagg atgtgtctgt caatagtttg aaggatgttc aggaagatcc 360 agttgatgct cagcgaatgc agagagttaa agaggcaatg gttcatgctt ggagttcaca 420 tgaaaagtat gcctggggac aagatgagct tcagccccag acaaaggatg gtgttgacag 480 ctttggtggc ctgggtgcaa ctatgataga tgcattagac acactatata taatgggtct 540 agatgagcag tttcagaaag ccagagagtg ggtagcaagc tcattagatt tcgacaagga 600 ttatgctgcc agtatgtttg agacaaccat aagagtggta ggagggcttc tcagtgcgta 660 tgatctttct ggggataaaa ttttccttga aaaggctatg gatattgcag acagattatt 720 gcctgcatgg gacactcaat cgggtatacc atataatatt atcaacttga agcatggaaa 780 tgctcacaat cctacatggg cggggggaga cagtattctt gcagattctg gtactgagca 840 gcttgaattt attgcccttt cccagaggac aggggaccca aaatatcagc aaaaggtaga 900 aaaggttatt tcagtgctaa ataagaactt ccctgctgat ggtttacttc cgatatatat 960 aaatcccgat acagctaatc catcgcagtc tacaataaca tttggtgcca tgggagacag 1020 cttttacgaa tatttgctca aagtttgggt gtttgggaac aaaacttcag cagtgaaaca 1080 ctatagagat atgtgggaga agtcaatgaa tggtctgcta agcttggtta agaaatcaac 1140 acctttgtcg tttacatata tctgtgagaa gagtggaaat tctttgatcg ataagatgga 1200 tgaattggca tgctttgctc ctggaatgtt ggctttagga gcatctgggt atagtgatcc 1260 tgctgaagga aagaagtttc tcacactcgc tgaagagctt gcgtggacat gttataactt 1320 ttaccaatca actccaacaa aactggctgg ggagaattat ttcttcaact ctgggagtga 1380 catgagtgtt ggaacgtcgt ggaacatctt gagaccagaa actgtcgaat cactgtttta 1440 cctctggcgg ttaactggaa acaagacata tcaagagtgg ggatggaata tatttgaagc 1500 atttgagaag aactcgcgca tagagtctgg atatgttggt ttgaaggatg ttaatacagg 1560 cgttaaggac aacaagatgc aaagtttctt ccttgcagag acactcaagt atctctatct 1620 actcttctcg ccgacaacag tcattccttt agacgagtgg gtattcaaca ccgaagctca 1680 tccacttaag attaagtctc gaaacgatca ggtaaatctc aaacaatcca acaaagtact 1740 gctacgaaaa ccggcattta gaatacgcca gaggcattat ggtcggataa caaagaagta 1800 aaactccctg gagaggtcac agtgtgattc gtaggagggg ctctatggat atatcttaac 1860 agagcaattg gatttagctt ggctattcaa agaccctttt atttaagaaa ccatttttgc 1920 aaaaaaaaaa aaaaaa 1936 // |
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