EBI Dbfetch

ID   AY050456; SV 1; linear; mRNA; STD; PLN; 1862 BP.
XX
AC   AY050456;
XX
DT   21-AUG-2001 (Rel. 68, Created)
DT   21-AUG-2001 (Rel. 68, Last updated, Version 1)
XX
DE   Arabidopsis thaliana AT5g14850/T9L3_150 mRNA, complete cds.
XX
KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1862
RA   Koesema E., Chen H., Cheuk R., Kim C.J., Meyers M.C., Shinn P., Banh J.,
RA   Bowser L., Carninci P., Dale J.M., Goldsmith A.D., Hayashizaki Y.,
RA   Ishida J., Jiang P.X., Jones T., Kamiya A., Karlin-Neumann G., Kawai J.,
RA   Lam B., Lee J.M., Lin J., Liu S.X., Miranda M., Narusaka M., Nguyen M.,
RA   Onodera C.S., Palm C.J., Pham P.K., Quach H.L., Sakurai T., Satou M.,
RA   Seki M., Southwick A., Tang C.C., Toriumi M., Yamada K., Yamamura Y.,
RA   Yu G., Yu S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   "Arabidopsis cDNA clones";
RL   Unpublished.
XX
RN   [2]
RP   1-1862
RA   Koesema E., Chen H., Cheuk R., Kim C.J., Meyers M.C., Shinn P., Banh J.,
RA   Bowser L., Carninci P., Dale J.M., Goldsmith A.D., Hayashizaki Y.,
RA   Ishida J., Jiang P.X., Jones T., Kamiya A., Karlin-Neumann G., Kawai J.,
RA   Lam B., Lee J.M., Lin J., Liu S.X., Miranda M., Narusaka M., Nguyen M.,
RA   Onodera C.S., Palm C.J., Pham P.K., Quach H.L., Sakurai T., Satou M.,
RA   Seki M., Southwick A., Tang C.C., Toriumi M., Yamada K., Yamamura Y.,
RA   Yu G., Yu S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
RT   ;
RL   Submitted (08-AUG-2001) to the EMBL/GenBank/DDBJ databases.
RL   Salk Institute Genomic Analysis Laboratory (SIGnAL), Plant Biology
RL   Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey
RL   Pines Road, La Jolla, CA 92037, USA
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CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA') :  Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P.,  Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Koesema,E., Chen,H.,
CC   Cheuk,R., Kim,C.J., Meyers,M.C., Shinn, P., Banh,J. Bowser,L.,
CC   Dale,J.M., Goldsmith,A.D., Jiang,P.X., Jones,T., Karlin-Neumann,G.,
CC   Lam,B., Lee,J.M., Lin,J., Liu,S.X., Miranda,M., Nguyen,M.,
CC   Onodera,C.S., Palm,C.J., Pham,P.K., Quach,H.L., Southwick,A.,
CC   Tang,C.C., Toriumi,M., Yamada,K., Yamamura, Y., Yu,G., Yu,S.,
CC   Davis,R.W.,  Theologis,A., and Ecker,J.R.
CC   Koesema,E. (SSP/Salk) and Seki,M. (RIKEN GSC) contributed equally
CC   to this work.  Shinozaki,K. (RIKEN GSC) and Ecker,J.R. (SSP/Salk)
CC   contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1862
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="5"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL07-16-L01(R13447)"
FT                   /note="ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   5'UTR           1..13
FT   CDS             14..1660
FT                   /codon_start=1
FT                   /product="AT5g14850/T9L3_150"
FT                   /note="dolichyl-phosphate-mannose-- glycolipid
FT                   alpha-mannosyltransferase -like protein"
FT                   /db_xref="GOA:Q94A15"
FT                   /db_xref="InterPro:IPR005599"
FT                   /db_xref="UniProtKB/TrEMBL:Q94A15"
FT                   /protein_id="AAK91470.1"
FT                   /translation="MDIRKRKNAGGDGDGGADGASVNVGDEPDSFGGRIGSPRRIFLFC
FT                   LAFRVVNALLIQTYFNPDEHWQSLEVAHRTIFGYGYMTWEWKRGIRSYLHPMLFAFLYK
FT                   LLQVTGLDTPYIMIKAPRLMQSIFSAIGDLYLYKLSDALYGGNVATWSLFCQMANWFIF
FT                   FCLNRTFSNCLETVLTIMGLYYWPCIRDSSIDYPVNRKWGLVIAALACAIRPTSAVIWL
FT                   YVGMLELFLTPNKVKFIILEVIPIGSLVLGFTCLLDRLMYGSWVIVPLNFLKFNFLSSG
FT                   GDYYGTHPWHWYFTQGFLVMLFTFTPFSIAGIIKSKNQKLSALILWVLAIYSILGHKEF
FT                   RFVLPVLPIALIFSGYAFAQMEVSGSSSSSSVTKKKQVPRQNHTKWSPKLRLSVYFLLA
FT                   TNIPMALYMSLFHQRGTEDAMNYLSDEAYKGRVKSILFLMPCHSTPYYSTLHRNIPMQF
FT                   LDCTPSAEKGELDESDQFLVNPLGFASELARNWSEPPSHIVLFASEETKLRDFMIQHSF
FT                   KEVRRFFHAHFKVDRDLQSSVVVYVVNHAFP"
FT   3'UTR           1661..1862
XX
SQ   Sequence 1862 BP; 486 A; 397 C; 389 G; 590 T; 0 other;
     aacgacttct tcgatggata taaggaagcg gaagaacgcc ggcggcgatg gcgacggtgg        60
     cgccgatggc gcgtcagtta atgtcggaga tgaacctgat tcgtttggtg gtcgaatagg       120
     atctccgagg aggatattct tgttctgctt ggcgtttcgt gtggtaaatg cattgttgat       180
     tcagacttat ttcaatcctg acgaacattg gcaatcactt gaagtagctc accgcaccat       240
     atttgggtat ggttatatga catgggagtg gaaaagagga atacgaagct atttgcatcc       300
     aatgttgttc gcattcttgt ataaacttct acaagttact ggccttgata ctccctacat       360
     aatgatcaaa gccccacgtc ttatgcaatc catattttca gctattggtg atctctattt       420
     gtataaactc tctgatgctt tatatggagg aaatgttgca acttggtctc tcttttgtca       480
     aatggcaaac tggttcatct tcttctgttt gaaccgtacc ttttcaaact gtttggagac       540
     tgttcttacc atcatggggc tgtactactg gccttgtatt agagattctt caatagacta       600
     tcccgtgaat cggaagtggg gtttggtcat agcggcccta gcatgtgcca taaggccaac       660
     tagtgcagtc atatggttat acgttgggat gctcgagcta tttttgacac ctaataaggt       720
     caaattcatc attctagagg tgatcccgat tggatctttg gtcctcggtt tcacctgttt       780
     gttggaccgt ctgatgtacg gctcgtgggt cattgtgcct ctcaattttc tgaagtttaa       840
     tttcctttcg tctggtggag actattacgg aactcaccca tggcactggt acttcaccca       900
     gggatttctt gtcatgcttt tcactttcac accattctcc attgctggaa ttatcaagtc       960
     taagaatcag aagctttcag ctcttattct atgggtctta gcaatataca gcatactcgg      1020
     ccataaggaa ttcaggtttg tcctgcctgt gctacccata gctttgatat tctctgggta      1080
     tgcatttgct caaatggaag tatctggttc atcatcatca tcatcagtca ctaaaaagaa      1140
     gcaagtccct cgacagaacc ataccaagtg gtctcccaaa ctaagacttt cagtctattt      1200
     tttgcttgct accaatattc caatggcact atacatgagt ttattccacc agagaggaac      1260
     tgaggatgcg atgaattact tatcggatga agcatacaaa ggcagagtaa agagcattct      1320
     ctttctcatg ccgtgccatt ctactcccta ttattccact ctccatcgta acattccaat      1380
     gcaatttctc gactgcactc caagtgcaga gaagggagaa cttgatgagt cggatcagtt      1440
     cttagtaaac cctttaggtt ttgcatcaga gttagctaga aactggtcag agccgcctag      1500
     tcatattgta ttgtttgcat cagaagaaac aaaactcaga gatttcatga tccaacattc      1560
     ctttaaagag gtaaggaggt ttttccacgc gcatttcaag gtagatcgag atcttcaatc      1620
     ctcagtggtc gtctatgttg taaaccacgc attcccataa gagtacgcaa cctcaaggtt      1680
     tttataatca ttagaacctc tctgaactcc tctgtctcac aatcaaacag tattttgtac      1740
     cttaagagcc taatcttggt atctgtttta gttccagtat gtcccggtta acaatgagta      1800
     tagatagaac agagatgtaa tttgagacta gttaatttct atgacgacag agagtcttaa      1860
     tc                                                                     1862
//