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EBI DbfetchID AY050398; SV 1; linear; mRNA; STD; PLN; 2939 BP. XX AC AY050398; XX DT 21-AUG-2001 (Rel. 68, Created) DT 16-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Arabidopsis thaliana At1g69830/T17F3_14 mRNA, complete cds. XX KW FLI_CDNA. XX OS Arabidopsis thaliana (thale cress) OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; OC eurosids II; Brassicales; Brassicaceae; Arabidopsis. XX RN [1] RP 1-2939 RA Shinn P., Chen H., Cheuk R., Kim C.J., Koesema E., Meyers M.C., Banh J., RA Bowser L., Carninci P., Dale J.M., Goldsmith A.D., Hayashizaki Y., RA Ishida J., Jiang P.X., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., RA Lam B., Lee J.M., Lin J., Liu S.X., Miranda M., Narusaka M., Nguyen M., RA Onodera C.S., Palm C.J., Pham P.K., Quach H.L., Sakurai T., Satou M., RA Seki M., Southwick A., Tang C.C., Toriumi M., Yamada K., Yamamura Y., RA Yu G., Yu S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.; RT "Arabidopsis cDNA clones"; RL Unpublished. XX RN [2] RP 1-2939 RA Shinn P., Chen H., Cheuk R., Kim C.J., Koesema E., Meyers M.C., Banh J., RA Bowser L., Carninci P., Dale J.M., Goldsmith A.D., Hayashizaki Y., RA Ishida J., Jiang P.X., Jones T., Kamiya A., Karlin-Neumann G., Kawai J., RA Lam B., Lee J.M., Lin J., Liu S.X., Miranda M., Narusaka M., Nguyen M., RA Onodera C.S., Palm C.J., Pham P.K., Quach H.L., Sakurai T., Satou M., RA Seki M., Southwick A., Tang C.C., Toriumi M., Yamada K., Yamamura Y., RA Yu G., Yu S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.; RT ; RL Submitted (16-JUL-2001) to the EMBL/GenBank/DDBJ databases. RL Salk Institute Genomic Analysis Laboratory (SIGnAL), Plant Biology RL Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey RL Pines Road, La Jolla, CA 92037, USA XX CC RIKEN Genomic Sciences Center (GSC) members carried out the CC collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN CC Arabidopsis Full-Length cDNA') : Seki,M., Narusaka,M., Ishida,J., CC Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J., CC Hayashizaki,Y. and Shinozaki,K. CC The Salk, Stanford, PGEC (SSP) Consortium members carried out the CC sequencing and annotation of the RAFL cDNAs: Shinn,P., Chen,H., CC Cheuk,R., Kim,C.J., Koesema,E., Meyers,M.C., Banh,J. Bowser,L., CC Dale,J.M., Goldsmith,A.D., Jiang,P.X., Jones,T., Karlin-Neumann,G., CC Lam,B., Lee,J.M., Lin,J., Liu,S.X., Miranda,M., Nguyen,M., CC Onodera,C.S., Palm,C.J., Pham,P.K., Quach,H.L., Southwick,A., CC Tang,C.C., Toriumi,M., Yamada,K., Yamamura, Y., Yu,G., Yu,S., CC Davis,R.W., Theologis,A., and Ecker,J.R. CC Shinn,P. (SSP/Salk) and Seki,M. (RIKEN GSC) contributed equally to CC this work. Shinozaki,K. (RIKEN GSC) and Ecker,J.R. (SSP/Salk) CC contributed equally to this work as PIs. XX FH Key Location/Qualifiers FH FT source 1..2939 FT /organism="Arabidopsis thaliana" FT /chromosome="1" FT /mol_type="mRNA" FT /clone="RAFL08-08-F08(R13168)" FT /note="ecotype: Columbia" FT /db_xref="taxon:3702" FT 5'UTR 1..46 FT CDS 47..2710 FT /codon_start=1 FT /product="At1g69830/T17F3_14" FT /note="putative alpha-amylase" FT /db_xref="GOA:Q94A41" FT /db_xref="HSSP:1P6W" FT /db_xref="InterPro:IPR006047" FT /db_xref="InterPro:IPR012850" FT /db_xref="InterPro:IPR013781" FT /db_xref="InterPro:IPR017853" FT /db_xref="UniProtKB/TrEMBL:Q94A41" FT /protein_id="AAK91414.1" FT /translation="MSTVPIESLLHHSYLRHNSKVNRGNRSFIPISLNLRSHFTSNKLL FT HSIGKSVGVSSMNKSPVAIRATSSDTAVVETAQSDDVIFKEIFPVQRIEKAEGKIYVRL FT KEVKEKNWELSVGCSIPGKWILHWGVSYVGDTGSEWDQPPEDMRPPGSIAIKDYAIETP FT LKKLSEGDSFFEVAINLNLESSVAALNFVLKDEETGAWYQHKGRDFKVPLVDDVPDNGN FT LIGAKKGFGALGQLSNIPLKQDKSSAETDSIEERKGLQEFYEEMPISKRVADDNSVSVT FT ARKCPETSKNIVSIETDLPGDVTVHWGVCKNGTKKWEIPSEPYPEETSLFKNKALRTRL FT QRKDDGNGSFGLFSLDGKLEGLCFVLKLNENTWLNYRGEDFYVPFLTSSSSPVETEAAQ FT VSKPKRKTDKEVSASGFTKEIITEIRNLAIDISSHKNQKTNVKEVQENILQEIEKLAAE FT AYSIFRSTTPAFSEEGVLEAEADKPDIKISSGTGSGFEILCQGFNWESNKSGRWYLELQ FT EKADELASLGFTVLWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDTVKKFHKVGIK FT VLGDAVLNHRCAHFKNQNGVWNLFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPN FT IDHSQDFVRKDIKEWLCWMMEEVGYDGWRLDFVRGFWGGYVKDYMDASKPYFAVGEYWD FT SLSYTYGEMDYNQDAHRQRIVDWINATSGAAGAFDVTTKGILHTALQKCEYWRLSDPKG FT KPPGVVGWWPSRAVTFIENHDTGSTQGHWRFPEGKEMQGYAYILTHPGTPAVFFDHIFS FT DYHSEIAALLSLRNRQKLHCRSEVNIDKSERDVYAAIIDEKVAMKIGPGHYEPPNGSQN FT WSVAVEGRDYKVWETS" FT 3'UTR 2711..2939 XX SQ Sequence 2939 BP; 904 A; 538 C; 689 G; 808 T; 0 other; aaaatatctt cttcttcttt cttctgctct ctctctctct ctcgccatgt ccactgttcc 60 cattgagtct cttctccacc attcttatct tcgtcacaac tcaaaagtca atcgcggaaa 120 tagaagcttc atacctatct cgttgaatct ccgttctcat ttcacttcta acaaactact 180 acactcaatt ggaaaaagtg tcggtgttag ctcgatgaac aaaagtcccg tcgccattcg 240 tgctacctca tcggatactg ccgtcgtgga aaccgctcaa tcggatgatg tcatcttcaa 300 ggaaattttc cctgttcagc gaatcgaaaa ggcagaagga aagatttatg ttcgattaaa 360 ggaagtgaag gagaagaatt gggagctgag tgttggatgt agtatacctg gaaaatggat 420 tttgcattgg ggagtttcat atgtgggtga tactggcagt gaatgggatc aacctccgga 480 agatatgaga cctcctggct caattgccat taaggactat gccatagaga cacctttgaa 540 gaagttatct gaaggagatt ctttttttga agttgctatt aatctaaatc tggagagttc 600 tgtagcagct ctcaattttg ttttgaagga cgaagaaact ggggcgtggt atcagcacaa 660 agggagagac tttaaggttc ctcttgtaga cgatgttcct gataatggaa atttgatcgg 720 agctaagaaa ggatttggtg cccttgggca gctttcaaac atccctctca aacaagataa 780 gtccagtgca gagactgatt ctattgaaga aagaaaaggt cttcaagagt tttacgagga 840 gatgccaata agtaaacgtg ttgccgatga taactcagtc agtgtcactg caaggaaatg 900 ccctgaaaca tctaagaaca ttgtatcaat tgaaaccgat ttaccgggtg acgttactgt 960 ccactgggga gtttgcaaaa acggcactaa gaaatgggaa attccatctg aaccttaccc 1020 tgaagagaca tctttgttta agaacaaggc attacgcact cgtttacagc gaaaagacga 1080 tggaaatgga tcgtttggat tattctctct ggatggaaag cttgaagggt tatgctttgt 1140 tcttaagtta aatgaaaata cttggctaaa ttataggggg gaagacttct atgtcccttt 1200 ccttacttca agtagctcgc ccgttgaaac tgaagctgcc caagtgagta aacccaaacg 1260 aaaaacagat aaagaagtgt ctgctagtgg atttactaaa gaaatcatca cggagataag 1320 gaacttggca attgacattt cctctcataa gaatcagaag acaaacgtca aagaagtgca 1380 ggaaaacatt ctacaagaaa ttgagaaact ggctgcggag gcatatagca tatttagaag 1440 cacaactcca gctttttccg aggaaggtgt tttagaagca gaagctgaca agcctgacat 1500 taaaatctcc tcaggaaccg gctcgggatt tgagatatta tgccaaggtt tcaactggga 1560 gtccaataaa tctgggagat ggtacttgga acttcaagaa aaagccgatg agttagcttc 1620 acttggattc actgttctgt ggttacctcc accgacagaa tctgtgtcac ctgaagggta 1680 catgcctaaa gacctgtata acttgaattc cagatatgga acaattgatg agctaaaaga 1740 tacagtgaag aaatttcaca aggtcgggat caaagtttta ggcgatgctg ttctgaatca 1800 ccgctgtgca cacttcaaaa atcaaaatgg tgtatggaat ctatttggag gacgtctaaa 1860 ctgggacgat agggcagtag ttgcagatga ccctcatttc cagggtagag gaaacaagag 1920 cagtggagat aatttccatg ctgctccaaa catagatcac tcgcaagact ttgttaggaa 1980 ggatatcaag gaatggctat gctggatgat ggaagaagtt gggtatgatg gatggaggct 2040 tgactttgta agagggttct ggggaggtta tgtgaaagac tatatggatg ctagcaaacc 2100 gtactttgcg gttggtgaat attgggattc gttaagttac acgtacggag aaatggacta 2160 caatcaagac gcacatcgtc aaagaatagt tgactggatt aatgcaacta gtggagctgc 2220 tggtgcattt gatgtcacta ccaaaggaat tcttcatacg gcgcttcaaa aatgtgaata 2280 ttggagactc tcagacccaa aagggaagcc tccaggtgta gttggttggt ggccttctcg 2340 tgctgtaaca ttcatcgaga atcatgacac tggctctaca cagggtcatt ggagatttcc 2400 ggaggggaag gaaatgcaag gatatgctta catcctaact catccaggaa caccagcggt 2460 cttcttcgac catatcttct cggattatca ttccgagatt gctgcacttc tctctctcag 2520 gaacagacag aaactccact gtcggagtga ggtgaatata gacaagagtg agagagatgt 2580 gtatgcggct ataatagatg aaaaggttgc aatgaagatc ggaccagggc attatgaacc 2640 accaaacgga tcgcaaaact ggtctgtagc cgttgaaggc agagactaca aggtgtggga 2700 aacatcttaa gaagaaggtt cccaattttt atgtgtatct agtagtaaat aaaattgttc 2760 ctggaggata tattatttca gggaataaga ttacctggaa atgttatatt tagagtggaa 2820 ttaaaaccag atctaagatt tgtcccactt ttttcaatgc tgagagaata ttcatattgt 2880 tgtattggat gcttgtaaag tgtatgcata tatatatgaa taataatata tctatttcc 2939 // |
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