EBI Dbfetch

ID   AY048259; SV 1; linear; mRNA; STD; PLN; 2183 BP.
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AC   AY048259;
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DT   06-AUG-2001 (Rel. 68, Created)
DT   06-AUG-2001 (Rel. 68, Last updated, Version 1)
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DE   Arabidopsis thaliana AT5g44930/K21C13_11 mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-2183
RA   Shinn P., Chen H., Cheuk R., Kim C.J., Koesema E., Meyers M.C., Banh J.,
RA   Bowser L., Carninci P., Dale J.M., Gibson H.A., Goldsmith A.D.,
RA   Hayashizaki Y., Ishida J., Jiang P.X., Jones T., Kamiya A.,
RA   Karlin-Neumann G., Kawai J., Lam B., Lee J.M., Lin J., Liu S.X.,
RA   Miranda M., Narusaka M., Nguyen M., Onodera C.S., Palm C.J., Pham P.K.,
RA   Quach H.L., Sakurai T., Satou M., Seki M., Southwick A., Tang C.C.,
RA   Toriumi M., Yamada K., Yu G., Yu S., Shinozaki K., Davis R.W.,
RA   Theologis A., Ecker J.R.;
RT   "Arabidopsis cDNA clones";
RL   Unpublished.
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RN   [2]
RP   1-2183
RA   Shinn P., Chen H., Cheuk R., Kim C.J., Koesema E., Meyers M.C., Banh J.,
RA   Bowser L., Carninci P., Dale J.M., Gibson H.A., Goldsmith A.D.,
RA   Hayashizaki Y., Ishida J., Jiang P.X., Jones T., Kamiya A.,
RA   Karlin-Neumann G., Kawai J., Lam B., Lee J.M., Lin J., Liu S.X.,
RA   Miranda M., Narusaka M., Nguyen M., Onodera C.S., Palm C.J., Pham P.K.,
RA   Quach H.L., Sakurai T., Satou M., Seki M., Southwick A., Tang C.C.,
RA   Toriumi M., Yamada K., Yu G., Yu S., Shinozaki K., Davis R.W.,
RA   Theologis A., Ecker J.R.;
RT   ;
RL   Submitted (13-JUL-2001) to the EMBL/GenBank/DDBJ databases.
RL   Salk Institute Genomic Analysis Laboratory (SIGnAL), Plant Biology
RL   Laboratory, The Salk Institute for Biological Studies, 10010 N. Torrey
RL   Pines Road, La Jolla, CA 92037, USA
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CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA') :  Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P.,  Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Shinn,P., Chen,H.,
CC   Cheuk,R., Kim,C.J., Koesema,E., Meyers,M.C., Banh,J. Bowser,L.,
CC   Dale,J.M., Goldsmith,A.D., Jiang,P.X., Jones,T., Karlin-Neumann,G.,
CC   Lam,B., Lee,J.M., Lin,J., Liu,S.X., Miranda,M., Nguyen,M.,
CC   Onodera,C.S., Palm,C.J., Pham,P.K., Quach,H.L., Southwick,A.,
CC   Tang,C.C., Toriumi,M., Yamada,K., Yamamura, Y., Yu,G., Yu,S.,
CC   Davis,R.W., Theologis,A., and Ecker,J.R.
CC   Shinn,P. (SSP/Salk) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Ecker,J.R. (SSP/Salk)
CC   contributed equally to this work as PIs.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2183
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="5"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL08-10-G21(R13094)"
FT                   /note="ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   5'UTR           1..3
FT   CDS             4..1335
FT                   /codon_start=1
FT                   /product="AT5g44930/K21C13_11"
FT                   /note="unknown protein"
FT                   /db_xref="GOA:Q9FLA5"
FT                   /db_xref="InterPro:IPR004263"
FT                   /db_xref="UniProtKB/TrEMBL:Q9FLA5"
FT                   /protein_id="AAK82521.1"
FT                   /translation="MNPKIRKPNNSSSKKVTVSVLSVFLVFVFVNTFFYPSFYSDSGSI
FT                   RRNLVDSRESFHFPGNFRKTKVYMYELPTNFTYGVIEQHGGEKSDDVTGLKYPGHQHMH
FT                   EWYLYSDLTRPEVKRVGSPIVRVFDPAEADLFYVSAFSSLSLIVDSGRPGFGYSDEEMQ
FT                   ESLVSWLESQEWWRRNNGRDHVIVAGDPNALKRVMDRVKNAVLLVTDFDRLRADQGSLV
FT                   KDVIIPYSHRIDAYEGELGVKQRTNLLFFMGNRYRKDGGKVRDLLFKLLEKEEDVVIKR
FT                   GTQSRENMRAVKQGMHTSKFCLHLAGDTSSACRLFDAIASLCVPVIVSDGIELPFEDVI
FT                   DYRKFSIFLRRDAALKPGFVVKKLRKVKPGKILKYQKVMKEVRRYFDYTHLNGSVNEIW
FT                   RQVTKKIPLIKLMINREKRMIKRDGSDPQCSCLCSNQTGIIHGV"
FT   3'UTR           1336..2183
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SQ   Sequence 2183 BP; 600 A; 416 C; 518 G; 649 T; 0 other;
     aagatgaacc ccaaaatcag aaaacccaat aattcatctt cgaagaaggt cacagtttcc        60
     gttctctctg ttttcttagt gttcgtcttc gttaatactt tcttctaccc aagtttttac       120
     tctgactctg gctcaattcg acgcaatctc gttgattctc gagaaagttt ccattttccg       180
     ggaaattttc gtaaaacgaa ggtttacatg tacgaattgc cgacgaattt tacttacgga       240
     gttatcgagc aacacggcgg agaaaaatct gatgacgtca ccgggttgaa atatccgggt       300
     catcagcata tgcatgagtg gtatctttac tcggatctta cccgacccga agttaaacga       360
     gtcgggtctc cgattgtaag ggtttttgac ccggctgagg cggatttgtt ttacgtctct       420
     gctttctctt cgttaagctt gattgtggat tcgggtcggc ccgggtttgg gtacagtgat       480
     gaggagatgc aggagagttt ggtgagttgg ttagaaagtc aagaatggtg gaggaggaac       540
     aatgggaggg atcatgtgat tgttgccggt gatccaaatg cgttgaaacg ggtcatggat       600
     cgggttaaga atgcggtttt gcttgtgacg gattttgacc ggttaagagc agaccaaggg       660
     tcgcttgtga aagacgtaat cataccttat tctcatagga ttgatgctta tgaaggcgag       720
     cttggagtta agcagaggac caacttgttg ttcttcatgg gaaatcgata tcgcaaagat       780
     ggaggcaaag tccgagattt gcttttcaag ctgcttgaga aagaagagga tgttgtgatc       840
     aaacgcggaa cacagtcaag agagaatatg cgtgcggtta aacaaggaat gcatacgtct       900
     aagttttgtc tacatctagc tggtgatact tcttctgctt gcagattatt tgatgccatt       960
     gctagtttat gtgtcccggt gattgtaagc gatgggattg agctaccttt tgaagatgtc      1020
     atagattaca ggaagttctc tatattcttg aggagagatg ccgctttgaa accagggttt      1080
     gtggttaaga agctgaggaa agtgaaacca ggaaagattt tgaagtacca aaaggttatg      1140
     aaagaggtta ggcgatattt tgactataca catctaaatg gaagtgtgaa cgagatctgg      1200
     agacaagtta ctaagaagat accgctaatc aaactgatga ttaatcggga gaagcgcatg      1260
     atcaagagag atggaagtga ccctcaatgt tcttgtttat gctcaaacca aaccgggatc      1320
     atccatggtg tctagtaagg ttaaatgcct agcaagctca tgctaagcaa caaaatgtga      1380
     tcattattaa tgatgaatca aagactggaa aggaacaaca agagaaacca catcactctc      1440
     taattccggg tcaagggttt gatcaagaat gcgcgtttcc tggtgggttt tgactttggg      1500
     agtgttaaat atcaagagag attcaagcaa agagagatct cagggcacgc tcccaaccct      1560
     cgaccctctc aggctcccct gcatggtttt gcttcagttg cttaaaagga agggaaaact      1620
     ctccatcaag attgccttct ccatcgggat tggctgctct ttttacatcg tccgatctta      1680
     cgttatagaa gattggaatc accacgagtt tcttttcctt catctgttca ttcatcgtca      1740
     caagctcatc caaacaccac tttgactcac agtacctctt ggagaagata gcaagcgcga      1800
     tttttgactt cttgatcctt gtgaagagat attgtagtct tctccctttc tgctctttag      1860
     tgtctatgaa gacgttgatc cctgcgtttc ttaattgcag ctctagatgg ttgacaaaga      1920
     tttcgcgcag ctcatctcct cggaagttga taaacacctg atcagaaaga ggttcttgga      1980
     cctgctcatc cattggaatg gtgtctaggt tcgtctgaat aaaaaatagt gaatatagtt      2040
     ggtgagagac tttgttgtct cactttgtcc tttaaaatac attacagaga aacgattctt      2100
     taattcttca gaccaatcag tggctcgatg ccaagtctgc gcctatcctc agtctttctt      2160
     taatattata caacattatt ggc                                              2183
//