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EBI DbfetchID AY045992; SV 1; linear; mRNA; STD; PLN; 1664 BP. XX AC AY045992; XX DT 31-JUL-2001 (Rel. 68, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 6) XX DE Arabidopsis thaliana putative beta-1,3-glucanase (At3g55430) mRNA, complete DE cds. XX KW FLI_CDNA. XX OS Arabidopsis thaliana (thale cress) OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; OC eurosids II; Brassicales; Brassicaceae; Arabidopsis. XX RN [1] RP 1-1664 RA Yamada K., Liu S.X., Sakano H., Pham P.K., Banh J., Chung M.K., RA Goldsmith A.D., Lee J.M., Quach H.L., Toriumi M., Yu G., Bowser L., RA Carninci P., Chen H., Cheuk R., Hayashizaki Y., Ishida J., Jones T., RA Kamiya A., Karlin-Neumann G., Kawai J., Kim C., Lam B., Lin J., Miranda M., RA Narusaka M., Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P., RA Southwick A., Shinozaki K., Davis R.W., Ecker J.R., Theologis A.; RT "Arabidopsis Full Length cDNA Clones"; RL Unpublished. XX RN [2] RP 1-1664 RA Yamada K., Liu S.X., Pham P.K., Banh J., Dale J.M., Goldsmith A.D., RA Jiang P.X., Lee J.M., Onodera C.S., Quach H.L., Tang C.C., Toriumi M., RA Yamamura Y., Yu G., Yu S., Bowser L., Carninci P., Chen H., Cheuk R., RA Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G., RA Kawai J., Kim C., Koesema E., Lam B., Lin J., Meyers M.C., Miranda M., RA Narusaka M., Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P., RA Southwick A., Tracy S.E., Shinozaki K., Davis R.W., Ecker J.R., RA Theologis A.; RT ; RL Submitted (10-JUL-2001) to the EMBL/GenBank/DDBJ databases. RL Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA XX CC RIKEN Genomic Sciences Center (GSC) members carried out the CC collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN CC Arabidopsis Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J., CC Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J., CC Hayashizaki,Y. and Shinozaki,K. CC The Salk, Stanford, PGEC (SSP) Consortium members carried out the CC sequencing and annotation of the RAFL cDNAs: Yamada,K., Liu,S.X., CC Pham,P.K., Banh,J., Dale,J.M., Goldsmith,A.D., Jiang,P.X., CC Lee,J.M., Onodera,C.S., Quach,H.L., Tang,C.C., Toriumi,M., CC Yamamura,Y., Yu,G., Yu,S., Bowser,L., Chen,H., Cheuk,R., Jones,T., CC Karlin-Neumann,G., Kim,C., Koesema,E., Lam,B., Lin,J., Meyers,M.C., CC Miranda,M., Nguyen,M., Palm,C.J., Shinn,P., Southwick,A., CC Tracy,S.E., Davis,R.W., Ecker,J.R. and Theologis,A. CC Yamada,K. (SSP/PGEC) and Seki,M. (RIKEN GSC) contributed equally to CC this work. Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP/PGEC) CC contributed equally to this work as PIs. CC Annotation is based on the January 2002 version of the Arabidopsis CC genome submitted to GenBank. XX FH Key Location/Qualifiers FH FT source 1..1664 FT /organism="Arabidopsis thaliana" FT /chromosome="3" FT /mol_type="mRNA" FT /clone="RAFL05-20-E01 (R10370)" FT /note="This clone is in a modified pBluescript vector FT (Lambda ZAP) as a XhoI/SstI insert. ecotype: Columbia" FT /db_xref="taxon:3702" FT 5'UTR 1..90 FT /gene="At3g55430" FT misc_difference 2 FT /gene="At3g55430" FT /note="not present in genomic sequence" FT CDS 91..1440 FT /codon_start=1 FT /gene="At3g55430" FT /product="putative beta-1,3-glucanase" FT /db_xref="GOA:Q94AJ8" FT /db_xref="HSSP:1AQ0" FT /db_xref="InterPro:IPR013781" FT /db_xref="UniProtKB/TrEMBL:Q94AJ8" FT /experiment="experimental evidence, no additional details FT recorded" FT /protein_id="AAK76666.1" FT /translation="MAKAPPSISLLLLLCAAVFLTIPAVISAIGVNYGTLGNLPPPTQV FT ANFIKTQTSIDSVKIFDVNPDILRAFAGTGISVVVTVPNGDIPALANGRQARRWVSVNI FT LPFHPQTKIKYISVGNEILLTGDNNMINNLLPAMRNLNNALVRAGVRDVKVTTAHSLNI FT IAYDLTGAPSSGRFRPGWDKGILAPILAYHRRTKSPFMVNPYPYFGFDPKNVNFAIFRT FT PYKAVRDPFTRHVYTNMFDALMDSTYSAMKALGYGDVNIVVGETGWPSACDAPWCSPAN FT AAWFNLNIIKRAQGQGTPLMPNRRFETYIFGLFNEEGKPGPTAERNWGLFRADFSPVYD FT VGLLRSGQGGGGRPALPAPSTAGGKWCVARSGATNTQLQDSINWVCGQGVDCKPIQAGG FT SCFNPSSLRTHASFVMNAYFQSHGRTDGACNFSGTGMIVGNNPSNGACKY" FT misc_difference 1127 FT /gene="At3g55430" FT /replace="a" FT /note="compared to genomic sequence resulting in an amino FT acid sequence difference" FT 3'UTR 1441..1664 FT /gene="At3g55430" FT misc_difference 1471 FT /gene="At3g55430" FT /replace="g" FT /note="compared to genomic sequence" FT misc_difference 1648 FT /gene="At3g55430" FT /replace="" FT /note="not present in genomic sequence" XX SQ Sequence 1664 BP; 426 A; 409 C; 373 G; 456 T; 0 other; tgattcgtcg taataataaa aacacaactc aaacgattca cgggtttcac ttggaatcgt 60 ttggttttct catttccgaa atataaaaag atggccaaag cgccaccgtc aatctctctt 120 ctcctcctcc tctgcgccgc cgtattcctc accatccccg ccgtgatctc cgccatcggt 180 gttaactacg gaactctcgg aaacctccca ccaccgactc aggtggctaa ctttatcaag 240 acacaaactt cgattgatag cgtcaagatc ttcgatgtga atcccgatat cctacgtgcc 300 ttcgctggaa ctggtatctc cgtcgttgtc accgttccta acggtgatat tccggcgttg 360 gctaacggaa gacaagctcg tcggtgggtt tcggttaaca ttttgccgtt tcatcctcag 420 acgaagatta agtatatctc agtcggaaat gagattctgc tcaccggaga taataacatg 480 atcaataatc tcttaccggc gatgaggaat cttaacaacg ctttggttcg tgctggtgtc 540 agagatgtta aggttacaac cgcacactca cttaacatca tagcctatga cctgaccggt 600 gcaccaagca gcggtagatt caggccgggt tgggacaaag gcatattggc tccaatccta 660 gcttaccatc gccgaaccaa gtcacctttc atggttaacc cgtaccctta ctttggtttt 720 gaccccaaaa acgtcaactt cgcaattttc cgaacaccgt acaaggcagt ccgtgacccg 780 ttcacccgcc acgtctacac caacatgttt gatgcactca tggactcgac atactcagcc 840 atgaaagctc ttggatacgg tgatgttaac attgtcgttg gcgagactgg ctggccatct 900 gcttgtgacg caccttggtg ctcgcctgcg aatgctgctt ggttcaacct caacattatc 960 aaacgtgcac aaggccaagg gacacctctc atgcctaaca gacggttcga gacatacatt 1020 ttcggtctct tcaacgaaga aggcaaaccc ggtccgaccg cagagcgtaa ctggggactt 1080 ttccgagcag atttctcccc ggtttacgat gttggtcttc tccgaagcgg acaaggcggt 1140 ggaggccgcc cagcattgcc cgcacctagt actgccggcg gtaaatggtg tgtagcgagg 1200 tccggggcga cgaatactca gctgcaagac agtattaatt gggtgtgtgg tcagggtgtt 1260 gactgtaaac cgatccaagc tggtggttcg tgctttaacc cgagcagttt gaggacgcac 1320 gcatcttttg ttatgaatgc ttatttccag agccacggcc gcactgatgg tgcttgtaac 1380 ttcagtggaa ctggtatgat cgtagggaac aacccaagca atggtgcatg taagtactaa 1440 ggagattgtc tatgtagtag tatttgtctg aaaaatccta acataatggt tctgaggaac 1500 tttggatttg agagatcatc agctttgtgt ttaatttcgg attatcctaa ttttaagatt 1560 tttttgttaa ttattttttc gctgattcct tttatttaaa taaagtggaa cttccataaa 1620 atttgcttca gcgttacgct taaaaacgaa aaaaaaaaaa aaaa 1664 // |
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