EBI Dbfetch

ID   AY045834; SV 1; linear; mRNA; STD; PLN; 1775 BP.
XX
AC   AY045834;
XX
DT   31-JUL-2001 (Rel. 68, Created)
DT   16-APR-2005 (Rel. 83, Last updated, Version 4)
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DE   Arabidopsis thaliana putative beta-amylase (At5g55700) mRNA, complete cds.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1775
RA   Yamada K., Liu S.X., Sakano H., Pham P.K., Banh J., Chung M.K.,
RA   Goldsmith A.D., Lee J.M., Quach H.L., Toriumi M., Yu G., Bowser L.,
RA   Carninci P., Chen H., Cheuk R., Hayashizaki Y., Ishida J., Jones T.,
RA   Kamiya A., Karlin-Neumann G., Kawai J., Kim C., Lam B., Lin J., Miranda M.,
RA   Narusaka M., Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P.,
RA   Southwick A., Shinozaki K., Davis R.W., Ecker J.R., Theologis A.;
RT   "Arabidopsis Full Length cDNA Clones";
RL   Unpublished.
XX
RN   [2]
RP   1-1775
RA   Yamada K., Liu S.X., Pham P.K., Banh J., Dale J.M., Goldsmith A.D.,
RA   Jiang P.X., Lee J.M., Onodera C.S., Quach H.L., Tang C.C., Toriumi M.,
RA   Yamamura Y., Yu G., Yu S., Bowser L., Carninci P., Chen H., Cheuk R.,
RA   Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G.,
RA   Kawai J., Kim C., Koesema E., Lam B., Lin J., Meyers M.C., Miranda M.,
RA   Narusaka M., Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P.,
RA   Southwick A., Tracy S.E., Shinozaki K., Davis R.W., Ecker J.R.,
RA   Theologis A.;
RT   ;
RL   Submitted (10-JUL-2001) to the EMBL/GenBank/DDBJ databases.
RL   Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA
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CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA'): Seki,M., Narusaka,M., Ishida,J.,
CC   Satou,M., Kamiya,A., Sakurai,T., Carninci,P., Kawai,J.,
CC   Hayashizaki,Y. and Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members carried out the
CC   sequencing and annotation of the RAFL cDNAs: Yamada,K., Liu,S.X.,
CC   Pham,P.K., Banh,J., Dale,J.M., Goldsmith,A.D., Jiang,P.X.,
CC   Lee,J.M., Onodera,C.S., Quach,H.L., Tang,C.C., Toriumi,M.,
CC   Yamamura,Y., Yu,G., Yu,S., Bowser,L., Chen,H., Cheuk,R., Jones,T.,
CC   Karlin-Neumann,G., Kim,C., Koesema,E., Lam,B., Lin,J., Meyers,M.C.,
CC   Miranda,M., Nguyen,M., Palm,C.J., Shinn,P., Southwick,A.,
CC   Tracy,S.E., Davis,R.W., Ecker,J.R. and Theologis,A.
CC   Yamada,K. (SSP/PGEC) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP/PGEC)
CC   contributed equally to this work as PIs.
CC   Annotation is based on the January 2002 version of the Arabidopsis
CC   genome submitted to GenBank.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1775
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="5"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL05-19-B03 (R10474)"
FT                   /note="This clone is in a modified pBluescript vector
FT                   (Lambda ZAP) as a XhoI/SstI insert. ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   5'UTR           1..42
FT                   /gene="At5g55700"
FT   CDS             43..1497
FT                   /codon_start=1
FT                   /gene="At5g55700"
FT                   /product="putative beta-amylase"
FT                   /db_xref="GOA:Q94AS2"
FT                   /db_xref="HSSP:1B1Y"
FT                   /db_xref="InterPro:IPR013781"
FT                   /db_xref="UniProtKB/TrEMBL:Q94AS2"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT                   /protein_id="AAK76508.1"
FT                   /translation="MIPPFKRGRFITKLRSVAGNSRIFSMDAREKSRSFVLVSSRHKRV
FT                   PVFVMMPIDTFGIDASGCPKIKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEF
FT                   KWSLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGGISLPLWIREIGDVNKDIYYRDK
FT                   SGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYLGNVIEEISIGLGPSGE
FT                   LRYPAHPSGDGRWKFPGIGEFQCHDKYMMEDLMAVASQEGKPQWGSRDPPNTGCYNSFP
FT                   SGVPFFEEGNDSFLSDYGRFFLEWYSGKLICHADAILAKAADVLRRRQEEEKSSVMLVA
FT                   KIGGIYWWYKTSSHPAELTAGYYNTSLRDGYDPVASVLSRHGAALNIPCLDMADSEIPE
FT                   KYLCSPEGLRRQIHDVSKKWTIHVTGRNTSERFDEMGLRQIRENCVQPNGDTLRSFTFC
FT                   RMNEKIFRVENWNNFVPFIRQMSADM"
FT   3'UTR           1498..1775
FT                   /gene="At5g55700"
FT   misc_difference 1758
FT                   /gene="At5g55700"
FT                   /note="not present in genomic sequence"
XX
SQ   Sequence 1775 BP; 499 A; 325 C; 410 G; 541 T; 0 other;
     cagagtacaa agcgtaatcg taactttttc cgaagcgttt ctatgattcc tcctttcaaa        60
     cgcggtcgtt tcatcactaa gttgcgttcc gtcgccggga acagccgaat ctttagcatg       120
     gatgctcgag agaaatcacg atcgtttgtg ttggtatcat caaggcacaa gagagttcca       180
     gtttttgtga tgatgccgat tgatacattt ggaattgatg cttctgggtg tccaaagatt       240
     aaaaggctca aggctttaac tgtatctctt aaggcactca agttagctgg tgttcatgga       300
     atcgcagttg aggtttggtg ggggattgta gagcgtttct ctcctcttga gtttaaatgg       360
     tcactgtatg aagagctttt tagactgatt tctgaggcag ggttgaagtt acatgttgct       420
     ctttgctttc attcaaatat gcatttgttt ggtgggaaag gaggcatcag tcttccactc       480
     tggatccgag agattggaga cgtcaataag gacatatact atagagataa aagcggattt       540
     tccaacaatg actatctcac acttggagtc gatcaacttc ctttgttcgg tggccgtact       600
     gctgttcaat gctatgaaga ttttatgctc agtttttcaa caaaatttga gccatatctt       660
     gggaatgtga ttgaagaaat aagtataggt cttggtcctt cgggggagct tagatatcct       720
     gcacatcctt ctggagatgg gaggtggaaa tttcctggaa ttggtgaatt ccaatgccat       780
     gacaagtaca tgatggaaga cttgatggca gtggcatccc aagaaggcaa acctcaatgg       840
     ggaagcagag atcctccgaa taccggctgc tataatagct ttccatctgg agttccgttc       900
     tttgaggagg gcaatgatag ctttctctct gactatggtc gtttctttct agaatggtac       960
     agtgggaagt tgatttgtca tgctgatgct attcttgcaa aggcagccga tgtcttgcgg      1020
     agacgtcagg aagaagagaa aagctctgta atgctggttg caaaaattgg tggaatctat      1080
     tggtggtata agacatcttc acaccccgct gaactaactg caggttatta caacacctcc      1140
     ctcagggatg gttatgatcc tgtagcttcc gtcttgtctc gtcatggtgc tgctctcaac      1200
     atcccctgct tggatatggc agatagtgaa atacctgaga aatatctttg cagccctgaa      1260
     ggattacgta gacagataca tgatgtttcg aagaagtgga caatacatgt gactggtaga      1320
     aacacaagcg aaagatttga tgagatggga ctaaggcaaa tacgagagaa ctgtgtgcaa      1380
     ccgaatggcg acactctaag atcatttacg ttttgcagaa tgaatgagaa gatctttagg      1440
     gtcgagaact ggaacaactt tgtccctttc attagacaga tgagtgcaga tatgtaaaca      1500
     cactcaccac ccattggtgt gtttgtcttt tgttacagaa tcgatctttc ctcaccatat      1560
     tgctttttca gatatgtgat gaggagaact aatcaaatca aaaattgtta tatgataaaa      1620
     tctctctctg tttctattct tcattttgtt ctatctctat tgcaaaagtc ttgcagaaac      1680
     ctttttcatt ggatcaaaaa gttacattgt atgttttgat tatcagaaag cgatccaata      1740
     cagaaggttt aatcacaaga aaaaaaaaaa aaaaa                                 1775
//