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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY040044; SV 1; linear; mRNA; STD; PLN; 1875 BP.
XX
AC   AY040044;
XX
DT   25-JUN-2001 (Rel. 68, Created)
DT   14-NOV-2006 (Rel. 89, Last updated, Version 5)
XX
DE   Arabidopsis thaliana unknown protein (At5g43710) mRNA, complete cds.
XX
KW   FLI_CDNA.
XX
OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1875
RA   Yamada K., Liu S.X., Sakano H., Pham P.K., Banh J., Etgu P., Lee J.M.,
RA   Toriumi M., Yu G., Brooks S., Chao Q., Chen H., Karlin-Neumann G., Kim C.,
RA   Lam B., Miranda M., Nguyen M., Palm C.J., Shinn P., Southwick A.,
RA   Davis R.W., Ecker J.R., Theologis A.;
RT   "Arabidopsis Open Reading Frame (ORF) Clones";
RL   Unpublished.
XX
RN   [2]
RP   1-1875
RA   Yamada K., Liu S.X., Sakano H., Pham P.K., Banh J., Chung M.K., Dale J.M.,
RA   Gibson H.A., Goldsmith A.D., Jiang P.X., Lee J.M., Quach H.L., Tang C.C.,
RA   Toriumi M., Yu G., Bowser L., Carninci P., Chen H., Cheuk R.,
RA   Hayashizaki Y., Ishida J., Jones T., Kamiya A., Karlin-Neumann G.,
RA   Kawai J., Kim C., Koesema E., Lam B., Lin J., Meyers M.C., Miranda M.,
RA   Narusaka M., Nguyen M., Palm C.J., Sakurai T., Satou M., Seki M., Shinn P.,
RA   Southwick A., Tracy S.E., Shinozaki K., Davis R.W., Ecker J.R.,
RA   Theologis A.;
RT   ;
RL   Submitted (08-JUN-2001) to the EMBL/GenBank/DDBJ databases.
RL   Plant Gene Expression Center, 800 Buchanan Street, Albany, CA 94710, USA
XX
CC   RIKEN Genomic Sciences Center (GSC) members carried out the
CC   collection and clustering of RAFL cDNAs (RAFL cDNA : 'RIKEN
CC   Arabidopsis Full-Length cDNA'): Seki,M., Narusaka,M.,  Ishida,J.,
CC   Satou,M.,  Kamiya,A., Sakurai,T., Carninci,P.,  Kawai, J.,
CC   Hayashizaki,Y.  and  Shinozaki,K.
CC   The Salk, Stanford, PGEC (SSP) Consortium members constructed and
CC   sequenced the pUNI (ORF) clones using the RAFL cDNAs: Yamada,K.,
CC   Liu,S.X., Sakano,H., Pham,P.K., Banh,J., Chung,M.K., Dale,J.M.,
CC   Gibson,H.A., Goldsmith,A.D., Jiang,P.X., Lee,J.M., Quach,H.L.,
CC   Tang,C.C., Toriumi,M., Yu,G., Bowser,L., Chen,H., Cheuk,R.,
CC   Jones,T., Karlin-Neumann,G., Kim,C., Koesema,E., Lam,B., Lin,J.,
CC   Meyers,M.C., Miranda,M., Nguyen,M., Palm,C.J., Shinn,P.,
CC   Southwick,A., Tracy,S.E., Davis,R.W., Ecker,J.R. and Theologis,A.
CC   Yamada,K. (SSP/PGEC) and Seki,M. (RIKEN GSC) contributed equally to
CC   this work.  Shinozaki,K. (RIKEN GSC) and Theologis,A. (SSP/PGEC)
CC   contributed equally to this work as PIs.
CC   Annotation is based on the January 2002 version of the Arabidopsis
CC   genome submitted to GenBank.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1875
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="5"
FT                   /mol_type="mRNA"
FT                   /clone="U09215"
FT                   /note="This clone is in pUNI 51. ecotype: Columbia"
FT                   /db_xref="taxon:3702"
FT   CDS             1..1875
FT                   /codon_start=1
FT                   /gene="At5g43710"
FT                   /product="unknown protein"
FT                   /db_xref="GOA:Q9FG93"
FT                   /db_xref="HSSP:1FMI"
FT                   /db_xref="InterPro:IPR001382"
FT                   /db_xref="UniProtKB/TrEMBL:Q9FG93"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT                   /protein_id="AAK64102.1"
FT                   /translation="MDSNFKWLLFAILISLTFSGFVLHHGVLAESVKPDEAKQLRDEVR
FT                   GMFYHAFDGYMNNAFPLDELRPLSCQGEDTLGGYALTLIDSLDTLALLGDRERFTSSVE
FT                   WIGKNLQFNINKTVSVFETTIRVLGGLLSAHLIASDYATGMRIPSYNNELLVLAENLAR
FT                   RMLPAFDTPTGIPFGSVNLMYGVDKHESKITSTAGGGTLSLEFGVLSRLTNDPVFEQVA
FT                   KNAVRGLWARRSNLDLVGAHINVFTGEWTQKDAGIGTSIDSFYEYLLKAYILFGDEEYL
FT                   YIFQEAYRSAMQYLHKDPWYVEVNMDSAAIVWPVFNSLQAFWPGLQVLAGDVDPAIRTH
FT                   TAFFSVWKRYGFTPEGFNLATLSVQYGQKSYPLRPELIESTYWLYKATRDPRYLDAGRD
FT                   FVASLQYGAKCPCGYCHITDVELHKQEDHMESFFLAETVKYLWLLFDLAVDSDNLVDNG
FT                   PYKYIFSTEGHLLPITPQISLAREHCSYFGGYCPSNSTKLEQEVLGEDSSNDDHSNDYP
FT                   YHESFPVTGLIKGLCPGLTHAQKYGFSYVLPEKTDREDVNQPKPVVTSSSIVLISDQTV
FT                   EKRPQEEEGFTSQSEPIMTISGGSSNDQTGQELTLLESETDDQRSYSS"
FT   misc_difference 1875
FT                   /gene="At5g43710"
FT                   /replace="a"
FT                   /note="compared to genomic sequence"
XX
SQ   Sequence 1875 BP; 533 A; 364 C; 421 G; 557 T; 0 other;
     atggactcaa atttcaagtg gcttttgttt gccatcttga tctctctgac attttcgggt        60
     tttgttcttc accatggagt tctcgctgaa agtgttaagc ctgatgaagc taaacagctt       120
     agagacgagg tacgtgggat gttttatcat gcctttgatg gatatatgaa caatgcgttt       180
     ccactcgatg aattgagacc gttatcttgc caaggagaag atactcttgg aggctatgcg       240
     ttgactctga ttgactcgtt ggatacatta gctttacttg gtgaccgaga gcgcttcact       300
     tcttctgttg aatggattgg taaaaatctt cagtttaata taaataaaac agtctctgtg       360
     tttgagacaa ctatccgagt ccttgggggg ttactatctg ctcatctgat tgcaagtgat       420
     tatgcaacgg gcatgagaat tccatcttac aacaatgaat tactagtttt ggctgagaat       480
     ttggcacgga gaatgcttcc tgcatttgat acaccgactg gaatcccatt tggatctgtg       540
     aatttgatgt acggtgttga caaacatgaa agcaagataa catcaactgc cggtggtggt       600
     actttgtctt tagagtttgg cgtgcttagt cgtttaacaa atgatcctgt tttcgaacaa       660
     gttgcaaaga atgcggtgag gggactatgg gcacgtcgtt caaatctcga cttggttggt       720
     gctcacatca atgtctttac aggtgaatgg acacagaagg atgctggtat aggaacaagc       780
     attgattcct tctatgagta tctactcaag gcttatatac tatttgggga tgaggaatat       840
     ctatacattt ttcaagaagc ttatagatct gcaatgcagt accttcacaa ggatccttgg       900
     tatgtagaag tcaatatgga ttccgcagct attgtctggc cagtatttaa cagccttcaa       960
     gctttctggc caggacttca ggttttagct ggagacgttg atccagcaat aagaactcac      1020
     actgccttct ttagcgtctg gaaacgatat ggtttcaccc ctgagggttt taatcttgct      1080
     acacttagtg tccagtatgg gcaaaagagt tatcccttaa ggccggaatt aatcgagagt      1140
     acatactggt tgtacaaagc taccagagat cccaggtatc ttgatgcagg acgtgacttt      1200
     gtggctagtt tgcaatacgg ggcaaaatgt ccttgcggtt attgtcacat cacagatgta      1260
     gaactgcata aacaagaaga tcacatggag agcttcttcc tcgcagaaac ggtgaagtac      1320
     ttatggctac tctttgactt agctgttgac tcggataacc tcgtagacaa tggcccttac      1380
     aagtacatct tcagtactga gggtcatctc ttaccaataa caccacaaat atctctagct      1440
     cgggaacatt gctcttactt tggtggatac tgtccaagca attccacaaa actagaacaa      1500
     gaagtccttg gagaagacag tagtaacgat gatcacagta acgattatcc ttaccacgaa      1560
     tcttttccag ttaccggttt gataaagggt ttatgtccag gactaacaca tgctcagaaa      1620
     tatggttttt cgtatgttct accggagaag acagatcgtg aagatgttaa tcaacctaaa      1680
     ccggtagtta caagcagttc aattgtgtta atctcggatc aaacagtgga gaagagacca      1740
     caggaagaag aaggatttac ttctcagtct gaaccaataa tgacaatctc tggtggtagt      1800
     agcaacgacc aaacaggtca agagctaacc ttgttagagt cagaaactga tgatcaaaga      1860
     tcatactctt cttag                                                       1875
//
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