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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AY028978; SV 1; linear; genomic RNA; STD; VRL; 874 BP.
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AC   AY028978;
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DT   08-JUN-2001 (Rel. 68, Created)
DT   16-SEP-2006 (Rel. 89, Last updated, Version 2)
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DE   Human rotavirus G9 strain 116E VP3 protein gene, partial cds.
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KW   .
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OS   Rotavirus G9
OC   Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Rotavirus; Rotavirus A.
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RN   [1]
RP   1-874
RX   DOI; 10.1007/s11262-005-0049-1
RX   PUBMED; 16972027.
RA   Subodh S., Bhan M.K., Ray P.;
RT   "Genetic characterization of VP3 gene of group A rotaviruses";
RL   Virus Genes 33(2):143-145(2006).
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RN   [2]
RP   1-874
RA   Ray P., Subodh S.;
RT   ;
RL   Submitted (21-MAR-2001) to the EMBL/GenBank/DDBJ databases.
RL   Pediatrics, All India Institute of Medical Sciences, Ansari Nagar, New
RL   Delhi, Delhi 110029, India
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FH   Key             Location/Qualifiers
FH
FT   source          1..874
FT                   /organism="Rotavirus G9"
FT                   /strain="116E"
FT                   /serotype="G9P11"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:42567"
FT   CDS             <1..>874
FT                   /codon_start=1
FT                   /product="VP3 protein"
FT                   /note="structural protein; guanylyltransferase"
FT                   /db_xref="GOA:Q91HJ9"
FT                   /db_xref="InterPro:IPR009697"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q91HJ9"
FT                   /protein_id="AAK57549.1"
FT                   /translation="ALRHSVAQVYADTQTYDTDDSKDEYENAFLISNLTTHNILYLNYS
FT                   VKTLKILNKSGIAAIEIQSPDELFTLIRCNFTYNYENNTVYLHDYSYYTNNEIRTDQHW
FT                   VTKTDITNYLLPGWKLTYVGYNGKNTRGHYKFSFICQNAATVDDIIIEYIYSNELDFQT
FT                   FLLRKIKERMTTSLPITRLSNRVFRDKLFSSILNTHKRVINVGPRNESMFTFINLPTIK
FT                   QFSNGAYLVKHSIKLKQERWLGKRVSQFDIGQYKNMLNVITTIYYYYNLHFSFPIIYML
FT                   GSAPSYWIYN"
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SQ   Sequence 874 BP; 327 A; 130 C; 134 G; 283 T; 0 other;
     gctttaagac acagtgtggc tcaggtgtat gcagatacgc aaacctatga tactgatgat        60
     tcaaaagatg aatatgaaaa tgcatttctt atttctaacc tcactacaca taatatattg       120
     tatttgaatt atagtgttaa aacactaaaa atattaaata agtcaggtat agcagcaatt       180
     gaaattcagt caccagacga attgtttaca ttgataagat gtaattttac gtataattat       240
     gaaaataata cagtttattt acacgattat tcatattata ctaataatga aataaggacg       300
     gatcagcatt gggtgactaa aactgatata actaactatc tattacctgg atggaaatta       360
     acgtatgtag gctataatgg aaaaaatact agaggtcact ataaattctc atttatatgc       420
     caaaatgcag ctactgtcga tgatataata attgaataca tatattccaa tgaattagat       480
     ttccaaactt ttttgctaag gaaaattaaa gagagaatga ccacatctct accaattact       540
     agattatcaa accgtgtgtt tagagataaa ttgttttcgt ccatattaaa tacacataaa       600
     agagtgataa acgttggtcc gagaaatgaa tccatgttta cattcataaa tctcccaacc       660
     atcaagcaat tttcgaatgg tgcatattta gttaagcatt caattaaatt gaagcaggaa       720
     agatggctag gtaaaagagt gtcgcagttc gacattggac agtataaaaa catgttaaat       780
     gtaattacta cgatttacta ttactataat ttacacttct cgtttcctat catatacatg       840
     cttggttcag ctccatctta ttggatatat aacg                                   874
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