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EBI DbfetchID AY026755; SV 1; linear; genomic DNA; STD; PRO; 2820 BP. XX AC AY026755; XX DT 29-MAR-2001 (Rel. 67, Created) DT 16-APR-2005 (Rel. 83, Last updated, Version 4) XX DE Cellvibrio japonicus rhamnogalacturonan lyase gene, complete cds. XX KW . XX OS Cellvibrio japonicus OC Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; OC Pseudomonadaceae; Cellvibrio. XX RN [1] RP 1-2820 RX DOI; 10.1042/0264-6021:3550167 RX PUBMED; 11256961. RA McKie V.A., Vincken J.P., Voragen A.G., van den Broek L.A., Stimson E., RA Gilbert H.J.; RT "A new family of rhamnogalacturonan lyases contains an enzyme that binds to RT cellulose"; RL Biochem. J. 355(Pt 1):167-177(2001). XX RN [2] RP 1-2820 RA McKie V.A., Gilbert H.J.; RT ; RL Submitted (01-FEB-2001) to the EMBL/GenBank/DDBJ databases. RL Biological and Nutritional Sciences, University of Newcastle Upon Tyne, RL Kings Road, Newcastle Upon Tyne, Tyne and Wear NE1 7RU, United Kingdom XX FH Key Location/Qualifiers FH FT source 1..2820 FT /organism="Cellvibrio japonicus" FT /strain="ATCC 55703" FT /mol_type="genomic DNA" FT /db_xref="taxon:155077" FT CDS 91..2736 FT /codon_start=1 FT /transl_table=11 FT /product="rhamnogalacturonan lyase" FT /db_xref="GOA:Q9AF09" FT /db_xref="HSSP:1XBD" FT /db_xref="InterPro:IPR012291" FT /db_xref="UniProtKB/TrEMBL:Q9AF09" FT /protein_id="AAK20911.1" FT /translation="MKITMQGKEPSRSPLWRPQNRSLFHRLCKQSWRWGVAFCWRPLPS FT PRARREYLDRGVVALPSGSGIYIGWRMLGDDPANIGFHVYRNGTRITSSPITNSTNYFD FT ASGSSSAAYTVRPVVNGVEQAANPAKATWSNPYWLVNLNRPAGGTTPSGEAYSYSPNDL FT SVGDLDGDGQYDIIVKWEPSNAKDNSQSGYTGNVYVDAYRLNGSQLWRIDLGRNIRAGA FT HYTQFIVYDLDGDGKAEVAMKTAPGTRDAAGNVLGGSNANYRLRNASGYVLSGAEYLTI FT FNGQTGVAMATTDYVPARGTVSSWGDNYGNRVDRFLAGVAYLDGQRPSLVMARGYYTRA FT VVVAWDWRNGSLSRRWTFDSNSGGNSAAAGQGAHSLTIGDVDQDGRDEIVYGAATINDN FT GTLLYSTGLGHGDALHLGDFNPNRPGLEVFMVHESPSSYGQHGIEMHDARTGAIVWSVQ FT GGGDIGRGVTMDVDPRYPGNESWASTGGLYSATGQQITTSKPASINFGVWWDADLLREQ FT LNNTMIDKWNYSNNTSSRLLTAYNYGAASNNGTKATPGLSADLFGDWREEVIWRHDNNS FT QLLIFSTTAVTTHKLRTLMHDTQYRTAIAWQNVAYNQPPHPSFFLGDGMATPAAPDIYF FT VGTNPNGGSTGSSSSSSSSSVAAPQVNLSGVAGNGQVSLSWTVNGSINGIEIYRDTDAD FT PAGRTRIASLSASTRSYTATGLTNGQPYWFWVKYTGADGTAYNSNAFNATPVGAATSSS FT SSVASSSSSSSSSSVASSAVSSSSAASGGSGSCSYVITNNWGSGFTGAIRITNRGSSAI FT NGWNVSWTYSGNTRISNSWNATVSGSNPYSAANLGWNATIQPGQTVEFGFQGTYSGSTE FT TPVISGSVCN" XX SQ Sequence 2820 BP; 612 A; 846 C; 806 G; 556 T; 0 other; gataaatctg acttatatac cctgtgttgc gctttttttg tgcagtaaag cgagtatccg 60 gcgaataaac ccaataagga gataactgcc atgaagataa ccatgcaagg aaaagaacca 120 tcgcggtcgc cactctggcg cccccaaaac cgatcactat ttcataggct atgcaagcag 180 tcctggcgct ggggtgtagc gttctgctgg cggcccctgc cttcgccgcg cgccaggcgg 240 gagtatctgg atcgcggggt ggtagccctg ccatcggggt cggggattta tatcggctgg 300 cgtatgctgg gcgatgatcc ggccaatatc ggcttccacg tgtatcgcaa tggcacccgt 360 attacgtcaa gtccgatcac caattccacc aactacttcg atgccagtgg cagctccagt 420 gcagcctata ccgtgcgccc ggttgtgaat ggggtagagc aggcggccaa cccggcaaaa 480 gcgacctgga gcaaccccta ttggctggtt aacctcaacc gcccggccgg cggtaccaca 540 cccagtggcg aagcctatag ctactcaccc aacgacctga gcgtgggcga cctcgatggc 600 gacggccaat atgacattat cgtgaagtgg gagccgtcca atgccaagga caactcccag 660 agtggttata ccggtaatgt gtatgtagat gcctatcgcc ttaatggcag ccagctgtgg 720 cgcattgacc tcggccgtaa tatccgcgcc ggtgcccact acacgcaatt tatcgtctac 780 gacctggacg gtgacggcaa ggccgaggtc gccatgaaaa cagcccccgg tacgcgcgat 840 gcagcgggta atgtactcgg tggcagtaat gccaattacc gactccgcaa tgccagcggc 900 tatgtcctct cgggggcgga atacctgact atcttcaatg gccagaccgg ggttgccatg 960 gcaaccaccg actatgtacc ggcgcgcggc acggtcagca gttggggcga taactatggc 1020 aaccgtgtag atcgcttcct cgccggggtc gcctacctgg atggccagcg cccgagcctg 1080 gtcatggcgc gcggttatta cacccgtgca gtggtggttg cctgggattg gcgcaatggc 1140 agcctcagcc ggcgctggac gttcgacagc aacagcggcg gcaacagcgc ggcagccggc 1200 cagggcgccc actcgctgac cattggcgat gtggaccagg acggccgcga tgaaattgtc 1260 tatggcgccg ccaccatcaa cgataacggt accctgctct attccaccgg cctggggcat 1320 ggcgatgcct tgcacctggg cgatttcaac cccaaccggc cggggctgga agtgtttatg 1380 gtgcacgaat ccccctccag ctatggccag cacggtattg aaatgcacga tgcgcgcacc 1440 ggcgctatcg tctggagtgt acagggcggt ggcgatatag gtcgcggggt aaccatggat 1500 gtcgatccgc gctatcccgg taacgaaagc tgggcatcca ccggcggact ctactccgcc 1560 accgggcagc agatcaccac cagcaaaccg gccagcatta actttggggt gtggtgggat 1620 gctgacctgc tgcgcgagca gttgaacaac accatgatcg acaagtggaa ctacagcaat 1680 aacaccagtt cgcgcctgct cacagcctat aactacggtg cggcgtccaa taacggtacc 1740 aaggcaacac cggggctatc ggctgacctg tttggcgact ggcgcgaaga agtgatctgg 1800 cgccacgaca acaacagcca gttgctgatc tttagcacca ctgctgtcac cacccacaag 1860 ctgcgcacgc tgatgcacga tacccaatac cgcacggcaa ttgcctggca aaacgtggct 1920 tacaaccagc caccccaccc cagcttcttc ctgggcgatg gtatggcgac accggcggca 1980 ccggatattt actttgtagg caccaacccc aatggcggtt caaccggcag ctcatcgagc 2040 agttccagct catcggtggc agcaccccag gtcaacctga gcggtgtggc cggtaatggc 2100 caggtcagtt tgagttggac cgtgaatggc agcattaacg gtatcgaaat ctatcgcgat 2160 accgatgccg atcctgcggg ccgcacgcgc atcgcatccc tgagtgccag cacgcgcagc 2220 tatacggcta ccgggttaac caatggccag ccctattggt tctgggtgaa atacaccggg 2280 gcagatggca cggcctacaa ttccaatgcc ttcaacgcaa ccccggttgg ggctgccacc 2340 agttccagct cctcagtggc gtcttcaagt tcgtcatcct cttccagctc cgtggccagc 2400 agtgctgtat ccagttcctc ggcggccagt ggcggcagcg gtagctgcag ctatgtgatc 2460 accaataact ggggctccgg ttttaccggt gcgattcgca tcaccaatcg cggcagcagc 2520 gcgattaacg gttggaatgt cagctggacc tacagcggta atacccgcat tagcaatagc 2580 tggaatgcca ctgtcagcgg cagcaatccc tacagcgctg ccaacctggg ctggaatgca 2640 accatccagc cggggcaaac cgtggaattc ggtttccagg ggacttactc cggcagcacg 2700 gaaacgcccg tgatcagtgg gtctgtgtgt aactgagtga ccaaaagaaa aaggggcagt 2760 catgcccctt tttcttgctt cttgcgctaa atatttccgg caatggttta gtgttcaccc 2820 // |
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