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EBI DbfetchID AM479372; SV 1; linear; genomic DNA; STD; PLN; 10623 BP. XX AC AM479372; XX PR Project:18357; XX DT 19-JAN-2007 (Rel. 90, Created) DT 05-FEB-2008 (Rel. 94, Last updated, Version 3) XX DE Vitis vinifera contig VV78X163815.7, whole genome shotgun sequence. XX KW . XX OS Vitis vinifera OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; Vitales; OC Vitaceae; Vitis. XX RN [1] RC revised by [3] RA Velasco R.; RT ; RL Submitted (19-DEC-2006) to the EMBL/GenBank/DDBJ databases. RL Velasco R., Genetics and Molecular Biology, istituto agrario "San Michele RL all'Adige", Via Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY. XX RN [2] RA Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A., Pruss D., RA Pindo M., FitzGerald L.M., Vezzulli S., Reid J., Malacarne G., Iliev D., RA Coppola G., Wardell B., Micheletti D., Macalma T., Facci M., Mitchell J.T., RA Perazzolli M., Eldredge G., Gatto P., Oyzerski R., Moretto M., Gutin N., RA Stefanini M., Chen Y., Segala C., Davenport C., Dematte L., Mraz A., RA Battilana J., Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., RA Lackey A., Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A., RA Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C., Lanchbury J., RA Bogden R., Skolnick M., Sgaramella V., Bhatnagar S.K., Fontana P., RA Gutin A., Van de Peer Y., Salamini F., Viola R.; RT "The first genome sequence of an elite grapevine cultivar (Pinot noir Vitis RT vinifera L.): coping with a highly heterozygous genome"; RL PLoS One 2(12):e1326-e1326(2007). XX RN [3] RP 1-10623 RA Velasco R.; RT ; RL Submitted (04-MAY-2007) to the EMBL/GenBank/DDBJ databases. RL IASMA, Genetics and Molecular Biology Department, Via Edmondo Mach, 1 38010 RL S. Michele all'Adige (TN) - ITALY XX DR RFAM; RF01230; snoR77. XX CC NOTE: This is a 'working draft' sequence. The true order of the contigs CC and the gap size among them are not known. The actual genome coverage is CC 11X, 7X sequenced by Sanger method and 4X by pyrosequencing. Sequencing CC effort has been performed by IASMA, Myriad Genetics and 454 Life Science. CC The gene prediction has been performed by FGENESH program in collaboration CC with Softberry, while the identified genes has been annotated by CC similarity search and their function has been described using Gene CC Ontology terms (www.geneontology.org). XX FH Key Location/Qualifiers FH FT source 1..10623 FT /organism="Vitis vinifera" FT /chromosome="4" FT /cultivar="Pinot Noir" FT /mol_type="genomic DNA" FT /clone="ENTAV 115" FT /db_xref="taxon:29760" FT CDS complement(3506..4492) FT /locus_tag="VITISV_033101" FT /product="hypothetical protein" FT /note="GO:0016020" FT /db_xref="GOA:A5C241" FT /db_xref="InterPro:IPR015338" FT /db_xref="UniProtKB/TrEMBL:A5C241" FT /protein_id="CAN68561.1" FT /translation="MRTVFAVVFFFVYAHLGTLSLRTLSDDPCDSTKLPDPRKLRSDQI FT TVLMNGYSESRIPLLRSIAATYAASPPVAAVVILWGNPSTPTRTLAELSHNFTIAYTGA FT APISLVRQASDSLNARFLPRPFIXTRGVIICDDDVEVDPKSIEFAFRVWAANPHRLIGL FT FARAHDLDLSRREWIYTVHPDKYSIVLTKFMVLKTEYLYKYSCEGGARMMEARRAVDMA FT QNCEDILMNFVVAEEGNAGPMLVGAEKVRDWGDGRNDEGLGLKEREVGLSSRRGEHRKR FT RGGCIGDFHRILGRMPLRYGYGKVVNSIAEEGLCMKDGKLVFCDQWP" FT CDS complement(7684..8172) FT /locus_tag="VITISV_033102" FT /product="hypothetical protein" FT /note="partially similar to EMBL:AF148498" FT /db_xref="InterPro:IPR003676" FT /db_xref="UniProtKB/TrEMBL:A5C242" FT /inference="similar to RNA sequence:EMBL:AF148498" FT /experiment="confirmed by EST" FT /protein_id="CAN68562.1" FT /translation="MDSKKSNKITEIVRLQQILKKWRKLANTSKSSGNSSSIKNSNNNN FT SNKGKLLRRTLSLSEKSDVVPKGYLAVCVGEELKRFVIPTKYLSHQAFNILLREAEEEF FT GFQQAGVLRIPCEVSAFENILKVVKKKDFRFLGEDAIGCCSSESQLNQSYHPQSPMCT" XX SQ Sequence 10623 BP; 3422 A; 1719 C; 1778 G; 3646 T; 58 other; tctcgcaaga catctcactt atttaaaatt taattcattt tcctaatttt taaaatattt 60 tcctaattct taaaatattt aaaatctcac ttatttaaaa tttaattcat tttcctaatt 120 tttaaaacat tttcctaatt cttaaaatat ttaaaatttt atgcattgtg gcatcatttt 180 ccattttttg atatacttcc caaaatatcc ttccaatcat ctcattgaat ttctcaaaaa 240 gggtaataat ttgtaaatat ctaatttaaa atgtgcaatt actaattact catctcattt 300 tttcttaaca tcaaactcaa attaattcct ttttatatat atatttttta ttatttccca 360 aactaccctt ttctaatcta aagcaagaca acctactttt taattttatt tcataatttt 420 cttcattcga tactaatttt aaatttaaac gcatcattaa aattggaata aaatgagaac 480 atagatttaa ttttttgaaa ataagattaa tctcagaaat aattgtcagt tctgttattt 540 ctttcaataa aacgtcgatt tgcacgaaga ttaatccggt gaagaatgta cttatgctta 600 ctagaccagc ttcaagaatg gttcggcagg tctgaagagc aaaagatcga tatctgagaa 660 gaataacacc tcccttgcca tggctagggc taagggggct gcctgaatga cttctcagat 720 tgaaaatttc aaaataaccg aacatggaca ttaaaatcca aaattttctc agcaaccaaa 780 cggtacgggg aggaaagtca gttgaagatt tagtggaatc aaactgttcc cgacttaccg 840 attagctccg ctagattaaa gaagatctta gcgaaataca gtgggaagtt ggaagattcg 900 atatagggag ctatattcat ctcaaaggca ctgttttgat aagccaaaga gccaaactcc 960 agccccatat gcatgttacc aacaacagca cagtacgagg agaaagaaca gaacatcgaa 1020 ataagtaaat ccctagaaac atttcagcaa atcgcaaaaa ccctaacttt gtctcccagg 1080 agaggcgaaa accctaaccc taactaaatg atgcagcggc ttatggggct ttaagccata 1140 tatatagcca gagagggcca ttgctggatt tacgcgtttg cccttcacat ttttctttat 1200 ttgcacttcg gacaaacccg aattagtgta ttcgtttgaa aagagactag aacttawact 1260 atatacttaa gtgtacacgt gacaatgcac gtgcaaaaaa atgattggga ttagatacaa 1320 atgagattac tttttatggc aaatttyatg ataaaaaatt attttttaac caattttctt 1380 agattaaata aatgaatacc accttrttcc ttagttataa catttatcaa ttttaattta 1440 aacacattat ttatttcttt tacattaaat ttgtaaaaaa aattatgtta attattttac 1500 atatagattg tgtttgatag tgattttaaa aagtatttct tatttttata ayactttaaa 1560 attttcatca ttcaagtatt aaaaatacta aaaacacttc ctataattac tgtcatatyc 1620 atttatagtt taaatactct ttttcctttt atataagagt tttttaataa aaataaatta 1680 atttgagtaa gaaatttatg gattaaaaaa ataaaagttt gtgaatgata gctttgtcaa 1740 acaaaaccta ttgaagagtt gaaaaaaata gagaatgaaa aaaaaagata aaaaaattca 1800 aactttaaag ataataaaat ttataatgga tgagaaattt gaaaagtttt maaactttta 1860 aaaataaatt tttataacat taattatatt aatagtgtgg ttttgaagat aatgaaattt 1920 ataactttaa aacatttttt aaatgaaaaa atgaagagta aataatttta atgattggtt 1980 ttcatacact tttttttaaa aaaaaattat attaaattta aaaattctta tagaaaaatt 2040 attaacttat attatgttgt taaaaaatat atatattatt tgtttatata tatatatgta 2100 tatatatata tatataatat caaattattc aatttatcag aaaaaatata aaggaaaaat 2160 aagttttgtt ctaaaaatat tttttttaaa tcaaaataac taaaatttca atagaaaaaa 2220 tttcaacatt ttgataaatt ttatgtcaaa atcttaatat tttaaaaata atgttgtatt 2280 tttcttaata aaatttattt ttttaaaata aataatgtaa atgaattatg aaacttttta 2340 ttttataatt atctataata taataagtgt tattattaaa ttatattatt taattaaata 2400 tacaagttta aaatatttaa atatctcaaa atgaataaaa atcactatta caattataaa 2460 agtaaaaaac ttcatataat ttaaaaatat atatatattt catcaaataa ataaaagata 2520 ggttaagata aaaagaaaaa aattaataat aaatataata atcaaataaa ttttttttat 2580 tttatcaaaa catactcatg gtttaaaata cttcggattt gttattaaga aaaaataaat 2640 aaaaaataaa aacctgattt gtgggaaagt cccaaaaaaa tcttaactgt tattcatctc 2700 aattccaaat ccgaaatcca aaaaaaactt tgcgattatc tcctaccata ataagacttc 2760 tctttataca tattataaat aaacaaaaat caataattga gattgataaa catattgttg 2820 atggatcata ggacattttg tcaaacaaaa tagttgtgcc aaatgagaga tttctatgta 2880 gaaaatgaat gcctaatttg agagatttcc cacaatcatc aatttttttt ccctttatag 2940 tttattaagg gtaacttcaa gattgaattt gaatataaaa ttaaaataaa rtattgaatt 3000 tgaatataaa atcaaaataa akttattcat taagtcaaat aattaaaacc ttaaattaat 3060 tccttattga aacaatccat gaaatataaa ttgaaagcaa ataaaaagat taaaattttc 3120 rctacctttt aggtttgtga tgacaatttc aggaatgact ttcgttaact tgattatgag 3180 tatggaaaat attaaawttt gaattagttt gtgatggtaa tttcgggaat ggttttcatt 3240 acgttaagta attaaaaatc taattaaatg aaaaaattaa atttatattt aagttgatta 3300 ttagtattga aaagattaaa ttttgaattg cttttgttcg gtataatgat tttaggaatg 3360 acttttgtta cgttaattaa aaataaaaaa gattaaatta tcatttaaat cgataattaa 3420 tattgatagg gatatttctg aaaataaaaa aaatgaaaaa caactcgtaa gtacagatat 3480 agatatagat attttccaaa actatctatg gccattgatc acagaacact agcttcccat 3540 ctttcataca caaaccttcc tcagcaatgg aattaaccac cttcccataa ccatacctta 3600 atggcattct tcccaaaatc ctatgaaaat cccctatgca cccccctctc ctcttcctgt 3660 gttcccctct cctactactc aaccccacct ccctctcctt caatcccagc ccttcatcat 3720 tcctcccgtc tccccagtct ctcaccttct ccgctcccac cagcatgggc cccgcattac 3780 cttcctccgc caccacaaaa ttcatcagta tgtcctcaca gttttgcgcc atatcaacgg 3840 ccctcctcgc ttccatcatc ctggccccac cttcgcaact gtacttgtac aaatactcgg 3900 ttttcaggac catgaacttg gtcaacacga tcgagtactt gtccggatgg acggtgtaga 3960 tccactcccg cctcgacaag tccagatcgt gtgctctcgc gaacagcccg atcaggcggt 4020 gggggttcgc ggcccagact cggaacgcga actcgataga cttggggtcc acctccacgt 4080 cgtcgtcgca tatgatcacc ccacgtgtcg ygatgaacgg acgcgggagg aacctcgcgt 4140 tgaggctgtc cgatgcctgg cggaccagag agatcggtgc cgcgccggtg taggcgatcg 4200 tgaagttgtg ggagagttcc gcgagggttc gcgttggagt ggaggggttt ccccagagga 4260 tgaccaccgc cgctactgga ggggacgcgg cgtacgtggc agcaatcgag cggaggagag 4320 ggatgcggga ctcggaatag ccgttcatca gaaccgtaat ctgatccgat cggagctttc 4380 gcgggtccgg aagcttggta ctgtcgcatg ggtcgtcgga gagtgtacgc agactcagag 4440 ttccgagatg tgcatagaca aagaagaaaa cgacggcgaa aacggttctc atcggagccg 4500 gactcagatt ccggcatcca atggtctacg ggtatggacc gtatctcacg tgcgcgtggg 4560 agagatctgt aattatacga catagaatga gtggcaatat cgtaattaac agaagattga 4620 ggtgcatttg gctttttcta gagcataatc ggataatgga agagaatgtg gaggagaaag 4680 gttgattttg agctccaatg gcgatgccta ttgccactgc aaagtttagt tttttaccga 4740 tgctgccatc atcatcatca tcatcatcga caatgggaat gcgttttttg aagccacckc 4800 actgtgcacc acttcagcag atccaagaac aggtgcgtat catggattta tgaaattagt 4860 agtggaattg gaaactcatg gatttgcggt aagcatcaat gtagctttcc aactcttctg 4920 tttttgaaga ttgatgtagg gattatgtgc gaaccatgca acggcaaagg atggttgctt 4980 tgtgattttt gtaaaggaca gaaaaccaat gtgaaagccg aaaacaatag gatctatcgg 5040 cgctgtccgt cttgtagagc tgtaagttgt ctactgatcc acctcttcaa aaggttattg 5100 aacagagttt atttgtgaga ctgtagttta taactcatcc tgtcaataga yacataggta 5160 gaggtggcat agtgtagaaa attggtgtca aattggcata gtgtagaaga aattggtgtc 5220 aaattgaaga aattgattca ttacgctttt gtgatttgca ctcacattct aatctgcatg 5280 gttatttcaa aatgagtgaa ttattggtct cagacacaca atgtttcatt tactttcaag 5340 tgcaaaagca aaagttttgt tttttatttc ttttgggaat attttgttaa gtcagcatgt 5400 ttctggttca taacatccgc ttgtatccca catgagaatc tcagtccatg taacatggtg 5460 cataattaca aatgcaactc ctttgttgga cattattgag ggcatataga cattcacaca 5520 atgttgatct agtcaaatga ttcccttttg ctataagtct tgttctgttc actaccgtgg 5580 aaaatggtgc ttatgtggat aatgcaatca tggaaacctt ccccaattta ggagatctcc 5640 catgagtgga taggtgagtc ctaggtccct tgtttgtgat acatccatag tggctggcat 5700 tgttagttca tttgtgaatg tacctcaaga ttccatatgg tatacaagaa ttgatccata 5760 tcatgaaagm ttatttaatc aagaaatctc actttcagac ctatcacttg gctgcagatt 5820 ggatacgtcc tgtgttcaaa gtgcaaagtt tttaaatgtg taacctttcc aaattatgat 5880 gacggtgaag agctgaattt ttgagcctca ggttctttca gttgctatca aaatcagata 5940 agaaagcgaa gaatcatcta tctgctgcag tttccagggc agttttgatt atttttgaac 6000 agctttttct tcttttcatt ctgtgtattt ctccctgggg ggagtttccg tgaaaggcat 6060 atgtataatt ggatattatg tgtaacaaaa tgattgagtg ataacctgtg catttttttg 6120 ttgattgtaa gtggagtaaa ccacaactga aaagttaaat agcttccatt cttgcttgca 6180 gaaggtcatg tgtgtatttc actgtgttta attggatctt acaatgtctt ttgaatttaa 6240 atcattaatt tactcaaggt ttctttgaat ctacatttac atctggttgc actttgtgaa 6300 acttaaaata tagggatgca tgtgaatgaa aagataagaa tcgtgaaata tatgctacta 6360 ttatttaatc caactcaatc tgactgcaaa tggctgcata tgatattgtt aacttcatag 6420 tgtcaacatt atagatacac tatatttgtt tccataatta ggcacattgg atgctgtaca 6480 gggattatag atacactatt ttgcacttag atattagtag actcaaataa atggtcaaca 6540 atggtgcact gcatttggcc aaaccattga atttcatagg cttcaatagg aagacaattc 6600 tataactgtt catttgaaca ttatttgtaa tgaatctagc tgtctctttc tcccatatat 6660 tgcattccat atataggcat tcttgaarct ctcttgagct catcttctaa gatatggtta 6720 aaatattcat caatatcatt tgtggttatg gtcccaargg ctccttcatt ccaaaggaag 6780 ccatatcttg atagaagaat tcatttttca tttatttctt atatgctcat ttgattgctg 6840 ttggcaaatt gaaatctaga accctttttc agtttttttt acttctaacc ccaaatttat 6900 cacttttttg cattaatctt ggaatttttt taagaagttt tggtggaaga aatgtaccag 6960 gactagggag tctcaaagaa actaattttc ctcagaagtt ttatactttt agttgaaaca 7020 catgcagcct gagtttctat gaagtttctc ttcttttaga ttcagagtgc cttgttggaa 7080 atcatttaga aatgaatgtt atgactagta agatgcaaga aaacaaagtt tttgttggtg 7140 ttatattcct aagggtgttg gatttactat aaatataaaa ggaagcaact gggaagttgt 7200 tcccatcatt tttgggtggc ttgawgtgtc ctcctctgga ccttcattaa agcaagcata 7260 tgtatcacca taacttggtg ctgtttgtag cccattttgc aatatgcttt gctggaaagt 7320 gattccacaa agagaaaata gaaagggaaa taaaagacat ttggagccat aggaaatatg 7380 agaagtcact tccttaaaaa cacagtaggt tgtgataaaa tctacattta ataaataata 7440 acctctaatg tttgatcttt tttagaggaa ccatctaatt ttggtgaaga tgcatcatga 7500 gaatgatcgg aggatgacag gggaaaacaa atagctatag atacagaaga ttccttgatc 7560 aatatttgtg ttgttaatat cttttcattg attgaagtat agaacatctt attaaaatct 7620 cccccactct ctctctcact cataaatttg cctcatacaa aggaatgaaa aggtgttaaa 7680 aaatcatgtg cacataggac tttgtggatg gtaagattga tttagctggc tttctgatga 7740 gcagcatcct atagcatctt ctccaagaaa cctgaaatcc ttcttcttga ccaccttcaa 7800 gatgttctca aatgcagaaa cttcacaagg aatccgcaaa actcctgctt gttgaaaccc 7860 aaattcctct tcggcttctc tgagtaggat gttgaatgct tgatggctca aatacttggt 7920 tgggatcaca aatctcttaa gctcttctcc aacacaaact gccaggtacc ctttagggac 7980 aacatctgat ttctccgaca gggagagtgt tctccttaga agtttgccct tattgctgtt 8040 gttattgttg ctgttcttta tgctgctgct attgccactg ctctttgatg tatttgcaag 8100 ttttctccat tttttgagga tctgttgaag cctgacaatc tcagtgatct tgttagactt 8160 cttggaatcc attttgcctt ttgaagctga aatgcctgct aatgtcgata ttagaaggtg 8220 agctgaactt tatagaagtt ggaaccagta agttctgata ttagttatta ctttcttttt 8280 tttttttgat aagaaaacaa gatatgcatt agaaaaaggc taaaatactt tctttaaaat 8340 aatgattatt caaatagtta aattttgtat attatagaac catttcacac caaaaaagtt 8400 tgtttattgg gtcttctatc atatataaag ttgggttctt ttgggttggt ctctctcctt 8460 aatttatcat ttgttgttta ttgggtcttc tatcatatat aaagtagtca aaacctgtgg 8520 gtagagggac cttgtacctt tcaatggtac tattactaaa gctactttgt cattaaattt 8580 tggctgcctc gatggtggag gcatgtggag taaaagactt ttaagagact gccatgtgag 8640 gatgtcacat ggcttcctat tgcttagcat gttcaggcaa gagagaattc agtggctttg 8700 gcttgacttc ttaaagcttg tagagccatt gccctcaaac cagtatagga agaaagatta 8760 gatattgcat catcttgact atggaagaag atcactaaag tgatttagtt gcattgactg 8820 aaccagttct attaagttct tataggtttt gtaacatagg ttatctaatt tttcttgtca 8880 tacattcatt catcaatctc tcctcattgt tgcaggttct gtctagtgct ggtgcctaat 8940 attacaaaga atgtattayc atctaagctt ttttcaataa tcttttagtt agccaaggga 9000 gagacttgac caagctctaa taatagatta tgattgagaa aatttttaat tacgcgtgct 9060 acgtgatctg cactccaatc caattatttt ttgtaattga ctttgagaat catcaaaacc 9120 attaatatat gccagggatg gcaggtacat ccaatgatta ttggaaggtg agagatyaat 9180 tattctatat gggataagct tgctaatttt atttccatta gaagaacatt tctagtcctc 9240 tatgcccccc cttttattaa cttttcactg ttttgtttgc tgcagtgtag gatcttacct 9300 atgtggtgtt catttcaggg agaagaagac gataaaccgt ccaaaatcga gttgttatta 9360 tataatatca gtatggattg tggagattgc agctaactta atggtgggtc atgagccaca 9420 tcaagaattt gcaaggtaca accaagattt cttataacca actagttctg cttaaagatt 9480 ctacatatgg cctccaattc cccagaaatt agacagcttt ccatatagtt gcaaataaat 9540 attttcctgg aacccctcct ggaaagctct gccgtatgct caaatcattg agacagcgaa 9600 gagatgccca ctgatactaa aatatcaggg tgaattagct gtcttttata aaatgctagc 9660 agatgtgaat ctcatatagg tcatggatgt tgcaaaattt taaaaatggc agcattgggg 9720 gttttgggtt tcaactattc tttctcttct tttggtatag ttttgtgttg tatagattaa 9780 tgggttcaat tgtggttgta actgcctaga ataatcctat taaagtatgt ctttcaaatt 9840 ttcaaatgag taggtgtaaa ggaatttgaa gaggtttagt cttaaagtgc tctttctatg 9900 ggttgttgtt ctaggtcttg attagcggct ttgaaatggg gagggatagt tggtctccat 9960 gagttagggc ctgtttggtt gctgtttttg aaaactgttm tggaaaacaa tttttgagaa 10020 cagtttttgg tgtttttttt taarawaraw wrtgtttggr aamwgaggak tttkraawry 10080 rgkkkytgtt cttaaaaaca awwwwacwtg wkggstttga rttagymmca tttgawwawa 10140 tttcgccctt agaargaaga aaatatagac aatctatctt ttcaaaacta ttgtgctact 10200 aaaaaaatat tcctttattt cctattcttt caaaattata aaaaagatta aagaagataa 10260 aatataatta aaattatata tatttaaatt acttcacata aaaataattc attaaagtaa 10320 cacatagaaa taattaattg aytttaattt atttattttt ttgtctmttt gtttctctct 10380 attttctttc tcttatttcc ctcttacttt tttttacgca atctttaagt gaagcaatgc 10440 actatccaat cttttagaga ctccctcgtt gctaatatct atatgtggtc tcgtgggctt 10500 tatttagttt aatactctta acacacacac acacacacta tccaatcttt tagagactcc 10560 ctcgttgcta atatctatat gtggtcttgt gggtctttat ttagtttaat acttcttaac 10620 aca 10623 // |
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