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EBI DbfetchID AM455421; SV 2; linear; genomic DNA; STD; PLN; 10522 BP. XX AC AM455421; XX PR Project:18357; XX DT 19-JAN-2007 (Rel. 90, Created) DT 05-FEB-2008 (Rel. 94, Last updated, Version 3) XX DE Vitis vinifera contig VV78X212299.3, whole genome shotgun sequence. XX KW . XX OS Vitis vinifera OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; Vitales; OC Vitaceae; Vitis. XX RN [1] RC revised by [3] RA Velasco R.; RT ; RL Submitted (19-DEC-2006) to the EMBL/GenBank/DDBJ databases. RL Velasco R., Genetics and Molecular Biology, istituto agrario "San Michele RL all'Adige", Via Edmondo Mach, 1. San Michele all'Adige (Tn), 38010, ITALY. XX RN [2] RA Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A., Pruss D., RA Pindo M., FitzGerald L.M., Vezzulli S., Reid J., Malacarne G., Iliev D., RA Coppola G., Wardell B., Micheletti D., Macalma T., Facci M., Mitchell J.T., RA Perazzolli M., Eldredge G., Gatto P., Oyzerski R., Moretto M., Gutin N., RA Stefanini M., Chen Y., Segala C., Davenport C., Dematte L., Mraz A., RA Battilana J., Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T., RA Lackey A., Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A., RA Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C., Lanchbury J., RA Bogden R., Skolnick M., Sgaramella V., Bhatnagar S.K., Fontana P., RA Gutin A., Van de Peer Y., Salamini F., Viola R.; RT "The first genome sequence of an elite grapevine cultivar (Pinot noir Vitis RT vinifera L.): coping with a highly heterozygous genome"; RL PLoS One 2(12):e1326-e1326(2007). XX RN [3] RP 1-10522 RA Velasco R.; RT ; RL Submitted (04-MAY-2007) to the EMBL/GenBank/DDBJ databases. RL IASMA, Genetics and Molecular Biology Department, Via Edmondo Mach, 1 38010 RL S. Michele all'Adige (TN) - ITALY XX CC NOTE: This is a 'working draft' sequence. The true order of the contigs CC and the gap size among them are not known. The actual genome coverage is CC 11X, 7X sequenced by Sanger method and 4X by pyrosequencing. Sequencing CC effort has been performed by IASMA, Myriad Genetics and 454 Life Science. CC The gene prediction has been performed by FGENESH program in collaboration CC with Softberry, while the identified genes has been annotated by CC similarity search and their function has been described using Gene CC Ontology terms (www.geneontology.org). XX FH Key Location/Qualifiers FH FT source 1..10522 FT /organism="Vitis vinifera" FT /chromosome="13" FT /cultivar="Pinot Noir" FT /mol_type="genomic DNA" FT /clone="ENTAV 115" FT /db_xref="taxon:29760" FT CDS join(1603..2888,3135..3219,3830..3978,4681..4844, FT 5813..6015) FT /locus_tag="VITISV_038957" FT /product="hypothetical protein" FT /db_xref="GOA:A5BDG2" FT /db_xref="InterPro:IPR011990" FT /db_xref="UniProtKB/TrEMBL:A5BDG2" FT /protein_id="CAN76750.1" FT /translation="MGVQVGWPKSHPFAPYSISSSQKLGSTVCLYPFTRLKINDGAVAR FT RLTLSKGCAIIRACCAKLDQFSDDGFFPRLDDHDDYRDNDHKNAVSKIFENSKYNEDDD FT GSSNMGFSASFSFSKLDSLRPSWLEIWPEPPNWPGRDEIIQASIERKAVRFDIPVSLRM FT IKRKQQWEEGVTKGEDSVYCSVKKAFSSMVFIIRELQSYSLQIKEILYCEDLQGILSRV FT HRELHASFVWLFQQVFSKTPTLMVYLMILLANFTVYSLMDDTENAETSIPPTSCMITET FT FSVTERENQPQPNFESLIFLKTSSVTSPNEVVKTSISTRPLPMTLCSNVVADEYGSEEL FT THMEEVNLWNSVVEEASRMAAESGAEALDHETIQRMVSPVGVELEADDYIEYFRTDLLY FT QIRISEDPNNPLLFCNYGQFLRLFARDQDRAEECFKRAVEVEPEDGEALNQYANFLWMD FT AFVWNLYTRSWVMTDEQCFQNRTGDRTGKVTGSRFTGRTGGQTAIEPVTKQNLVLSYDR FT FAKNRTGRLVRRSNRRFERFNAGLITKRFIKRIEPDGSPVDGWTVNDPDKHTRIVYVGR FT PDALWQSSGCYVCECRVPLLERVRIGEARHVYSWGNSDENVCHVSLGDVYHV" FT CDS complement(join(8329..8489,9149..9219,9450..9504, FT 9728..9782)) FT /locus_tag="VITISV_038958" FT /product="hypothetical protein" FT /note="GO:0016020" FT /db_xref="GOA:A5BDG3" FT /db_xref="InterPro:IPR015338" FT /db_xref="UniProtKB/TrEMBL:A5BDG3" FT /experiment="confirmed by EST" FT /protein_id="CAN76751.1" FT /translation="MYIEELVTHHTELLVVVDERQYRFLCLCWMVVCLVDGNCEDIAMS FT FLVANVTGSPPIWVKGKIFEIGSTGISSLGGHTEKRSQCVNRFAMEYGRMPLVSTSMKA FT VDSRSSWFW" XX SQ Sequence 10522 BP; 3375 A; 1983 C; 1880 G; 3264 T; 20 other; gcaggtgcaa cyactgaatc aagwacccct tgtgtgttga gaatcacgtg tccatccata 60 tagcrgcaac gtggaccatc ggatacgcga ggakacaaca gttgctagta ttatgcttca 120 atcatagtta ttataccaac catccaatta ataaattgaa actgataacc tttttcattc 180 aataatcaat cagcattgtt tctaactctt aataacattt gtcaatgcgg tgttgtgtgt 240 ttgtattttg gctaaacaga aattatggta tatggctaag gtccagaaca ccctaccacc 300 tactccccgc aaattgggct cattcagagc ccaatgtttt tatctgttaa agaagagggg 360 tccaaaattt ggcccactag actaacccgg tttgaggcca gcccaaccct ccagagtctc 420 attagggctg actttatgca ccaccattcg ccgccagatt cccaccaaaa tccttcaaaa 480 ttccatgggt aaattataaa aatcatcctc attcctcatc tcaatttaat tcctaaacct 540 tttttttttt tttcattttt ctgaagtaat gctactcttc ttctaaaacg gaatgtcaaa 600 taaatcattt tagtaaagtt ttccttacaa aataaatgaa gagactcata tgataaatgt 660 atcaataaat ttagacacac gaatatatat tttattaaaa gcttatgcaa atatctatat 720 aactgtcatg tgagtttttc tacataaaaa ggcttaatat gcctttttat ttgacatttg 780 gatttagtac gtgatgttac ttcaaaaaaa aaaaaaacag tttaagaaag cccaagggtc 840 aagcctgcca ggcctaaacc cataccaaga aaccaatgtc aagaataaat accgagatgc 900 cacatgttgt ttggtttctg caacgtggca agaagacaac gtccccgcgt gtgatcatgc 960 ttttgttgga cacgggtaaa tcctactttt ccatgcagga cgctcggtca atctgtcgag 1020 ctgcatctca tttttccgga aacaaacagt tgcaggtgtc catagcagga ctttctctct 1080 cctctttttt ccaccatttt gtcaccttaa ccagaggaag ctatatctat atgcagtgac 1140 tactatggtt aatcatcatc tttccatttg tcttctgttc taatacattg catctgatac 1200 attaattgag ttttttctcc tcccttgaac tcaattcctt ttttgtttaa ctgaattgaa 1260 tttggcgtga ggaaggtgga aggaaatagt cataggcaga ggtgtacttt gattttgact 1320 taggggatat ggctgatctg gttacaggta ggcttgaaat gaaagctagt tctagacttt 1380 ctcctgattc ggcaccatat tttttttcaa agcaaaatta gctttcagtt tcattcacgg 1440 actttctggg gctttgacta tttgaatcct tattcttctt cttcttcctc ctcttcttct 1500 ccttcccccc cagggtctcc tttcatcagt ttctcatcac ccattactcc tagtactctc 1560 tcttaatctg tagacaagtg ggttctgatc gttatcaaag atatgggtgt gcaggttgga 1620 tggccaaagt cacacccttt tgccccttat tcaatctctt cttctcagaa attgggttct 1680 actgtttgtt tatatccatt cacaagactt aagatcaatg atggagctgt agctcgcagg 1740 cttacactct caaaaggctg tgccattatc cgagcttgct gtgccaagtt agatcaattc 1800 tctgatgatg gtttttttcc aagactggat gatcatgatg attaccgtga caatgaccac 1860 aagaatgcag tgtccaaaat ctttgaaaat tcaaagtaca atgaagatga tgatggtagt 1920 agcaacatgg ggttttcagc atcattttct ttttccaagc ttgactcttt gaggccttct 1980 tggctagaaa tttggccaga gccgcccaac tggccaggga gagatgagat tattcaggca 2040 agcatcgaaa gaaaggcggt taggtttgat atccctgtct ctctgcggat gattaagagg 2100 aagcaacaat gggaagaggg tgttacaaaa ggagaagatt ctgtttattg ttccgtgaag 2160 aaggccttct cttcgatggt attcataatt agggagctgc agagctactc cttacagata 2220 aaggaaattc tctactgtga agatctacaa gggattctga gccgggttca tagagaattg 2280 catgcatcct ttgtatggct ttttcaacag gtgttctcca aaacaccaac tctcatggtg 2340 tatttgatga ttctgttagc gaatttcaca gtatattcac tgatggatga tactgaaaat 2400 gcagaaactt ctattcctcc aacctcatgt atgatcactg agactttctc agtgacagag 2460 agagagaatc aaccacaacc caatttcgaa tctttaattt tccttaagac atcatcagtc 2520 acttctccaa atgaggttgt gaagactagc atcagtacta gaccattgcc aatgacccta 2580 tgttcgaatg tggttgctga tgagtatggg agcgaggaac tgacccacat ggaggaggtg 2640 aacttgtgga actcagtggt agaggaagct tcaaggatgg cggccgaatc aggggctgag 2700 gctctggatc atgagactat tcaaaggatg gtctctccgg ttggcgtgga acttgaagca 2760 gatgactaca tagagtattt cagaacagat cttctgtacc agattagaat atctgaggat 2820 cccaataatc cccttctgtt ctgtaattac gggcagttcc tccgcctttt cgctcgtgat 2880 caggacaggt gaacttctaa ctcaatttac ttgaagggcc ttttacattc tctgcatatt 2940 ttctgtgtca taataaaatg tagagtgata ctctcttcca atatctatcc atggacacag 3000 tttagaaccc tggcctcttt tcgctaccca tttttcaaat tcaaaaacaa ttaggaggat 3060 agagaagctc tttagccaca tgggtttgat atatagtgat atgctgatga atttgtgtgg 3120 ttggggttta acagggcaga ggaatgcttc aagagggctg tagaggtgga accagaggat 3180 ggagaggcac tgaaccaata tgcaaacttc ttatggatgg taaggaagga tctgtgggga 3240 gcagaggaga gatttctgca agccatggca gcagagccag gaaaccctta ccatgtttcc 3300 aactatgcca ctttcctttg gaatactggt ggtggggata cctgttttcc tctccaacca 3360 tcccagctgt aacaagaaga aggcttaata gtggaaagag aattcagatt actctcttgt 3420 gcccttcttg ctcctaatct attgcttgat ttcttgattt cagcaaaaga aaaagaaatg 3480 ctgttccaac aaacatgact ggtatgcact aaaaggagta gcaatgtaat gactggggat 3540 tgggaatgaa aatggttgct ctaatagtcc aatatgacaa gcgtaattgt ggactactgg 3600 tatatgtggg tcaaattcat tttaggggtt cttattattt taatgaattg ggggccgaat 3660 gtgttttttc atgagagaac gatttttggt taatttgttc cttacaaggt ctcctcagaa 3720 gcgggaattg ttcttagtct tactgtaatt tttctctcac tctaaaagct ttcaggattc 3780 tcaggttgtt gagatgaggt gtaagtttgg ccatcaatgc ttgtgctagg atgcgtttgt 3840 ttggaacctt tacacgcgat catgggtgat gactgatgag caatgttttc agaatcggac 3900 cggtgatcga accggaaaag ttaccggttc acggttcact ggtcggaccg gcggtcagac 3960 cgctatcgaa ccggtgacgt cataaatata taatttatat attattaaaa ttaaaattaa 4020 ttataaaaat taaaaatata taaaattaca aattttaata atgtttgatt tttatatttg 4080 gtatattaaa ttaaatgata aagtttaata ttttaaattt tattaaatag aaatatgtaa 4140 tatttaagaa agaagatata tttaagataa aaaaatttta aatatttaat tttatccttt 4200 tgtctttgta ttttattgtt tttaaattat tctattaact aatttatatt attttttata 4260 attattataa aaataaacag gaatttaaat atttatattt tttaaaagag tttatatgat 4320 aaaattttga aataaaatca aagttccatg cgtccaaagg caatgttttc ctctaaatgg 4380 ctctaatagc ctcattccca atcccacatc ggaagcacaa gaattttatg tgctccatgt 4440 gctctataaa tgccttccaa cttgccttca agacaaacaa gccagcaagc tgggcctgaa 4500 agcatggccc aaatgcaagt gtaattttaa aatagagaat gctgcaaact gggcttgtag 4560 acatggccca aataatagtg ttttaatctt ttcattggac taggccttag tggcttggac 4620 caaagatggt ttattaggtt gagttgtaag cattgggccg gaatgggcct tttcatatag 4680 taaacaaaat cttgttttaa gttatgaccg gtttgcaaaa aaccggacgg gtcgtctggt 4740 tcgacggtcc aaccgtcggt ttgaacgatt caatgccggt ttgataacaa aacggttcat 4800 taagcggatc gaaccggatg gttcaccggt cgacggttgg accggtccga tcggccggtc 4860 cggtccggtt tttaaaacca tgctgatgag agacaaatat caatgatttg atttttatgg 4920 aaatatggaa ggagatttca atattgatta agatgaaaat tttcataaaa ataaaataat 4980 aaattcaaaa gaaattgaat aacaaataaa aattataaat gaaattttga aaaatgataa 5040 tgcccatgta agattagatt tttaaagaaa agaatttaac aatgtgtact aatattaaca 5100 tcataaaaat gtttgtaaga taacaataat tattttaatt tcttttcata atttatcata 5160 aataaaaaat tgtttgaatt tattttgtat tatatttgaa attttataag atatttatgc 5220 aaagtatgat aaaatatcaa ctaaatatct actcctcttt tcaatttcct acccctatat 5280 tattaccatc catgcttata gaagtgaacg agaaattata catgcatcac tcgtggcatc 5340 tgttgaggcc tcgcgtccct ggtgatccac gtagttgcca aatggatgga cgcacgatct 5400 caaccaatat agattcttga ttcaatcgta ctacctgtaa aagacgtccg gacagggtgt 5460 tcggacgtac cctccgatgg ttttttcagc catggttaga gagatagaga taaatcagtt 5520 ggtcttttac caagtataac aaacttgtct tcctctttgt gtgaaggttc atatatatag 5580 tattagaagc tttgtttccc tctttaatgg tagagagata ttttgtgttg tcataatgac 5640 actaggtggt ggcagggtca tcatcaccct acgggcggct gacagagatc gtggtagttg 5700 ctgcgactgt tagaaatcgt gggaagtgat cataggaagt gacttgttgt cacttcattc 5760 ttgtcctttc accctgcagg tggtggatac gtataagact tgcttacttc agtcaatgat 5820 ccagacaaac atacccggat agtgtatgtc ggtcgtccgg atgcgctgtg gcagtcgtcc 5880 ggatgttatg tttgtgagtg tcgtgtacct ctccttgaga gagtccgaat aggagaagcg 5940 cgccacgtgt actcttgggg aaattcggat gagaatgtgt gccacgtatc attaggagat 6000 gtgtaccacg tgtgaggagg ggtccctaca gcatccactc aggattatga ggtttctaga 6060 acaaaaatac cccttaatta aaaacccaaa atatccttaa acttcaactt tcatctacct 6120 tcttttttct atttacattt attctcttct aatatcttaa aaatcctaac aaaagtgtag 6180 ggttggacaa tttttttgga tgcctccttg atgtctgacc ttttaccatg gttcaaaatg 6240 gtcgttgact cagtaccggc atctcggttc agtatgatat gcaaaataag atacttaaaa 6300 gttcaaaaaa ttataaaaat tatttttaat ataactaaat gaattaagaa actaataaac 6360 ttaataataa atttttgaca taataataaa tcaaataatt tcttaaatta ttaacaataa 6420 attaacatat aaaataatac accttatata ataccattac catataaaat aatatattac 6480 ctaaattaaa gtcattcata ccatatttaa tatataaaat actaattttc aaatttctaa 6540 ttccaattac tgttgacata tgagataaaa ggtaaaatga tgcaaataca tgaacatttg 6600 aaataacaaa tcatttttat ataaaataat acattaagcc cttttcttca attatcaatc 6660 tcaaacatca cttattcaca ccacgggata ccggtttgca gaggcaaaag tagccaaaca 6720 acatagatcg agcaaggaga ggcaacacca acatgcaaag atcatcatca atgaaagaat 6780 gtgatgtttc tcaccaatcc ttcatggcta tgggtcttga attttttttt atttttaaga 6840 gaatctctca tttttattat agatttctca gttttggtta ttttttgttg tgatttaaaa 6900 gggaaaaaaa atttggttta gtctaagaat atttagatct taaaygattg aactcctaat 6960 ttcratcgag tcacttagaa tstcaatgga ggtgactaag tttaaccrrt tcttagttgg 7020 gtttgtattg aagatagtat cgagtatcgg actcagagca caaaggttcg aggcgctcgg 7080 actcgaccga tattttgaac cttcccgcac cgcataaatt tctttttcta ttttttttaa 7140 ttttcttcta tttttttcaa atattttcac ttctaaatta tttataaaca tcttttaaat 7200 tattttttgt aacaaatatt tgtcaaaact tacagaaata ataagcttta aattattttc 7260 gtgtagaaca aacagaatat tagcgtataa aaaaatgcat aaaagatgtt gaaatcctaa 7320 ttgaaatgca ttttttttgt tgacaaacaa ttttggaaga agaagatttt gccttaggat 7380 ttgctgcgag aaaaaataag aataatttgt agcttggaat tattctttcg agctttgaaa 7440 taatctcaaa attttctaat cccaatatcc atacattaaa cctcaagtat ggtggagcat 7500 caaaaccatg ctctgctcca gtgggtgtcc atcagaggtg tttgttggca tgcataacca 7560 ttctccaacc attttccccg atcttagcca tctccccagt ccctcaactg catagtggaa 7620 taaaatgttc atttcgggaa aaagaacaag gaagacaact aactgtgaag atgcctcata 7680 ttacccaaac tttcaagctt tagaccattt ctctgggtga gcattttttg tccttcattt 7740 catgctacag ccaaatggtg gtatactaca tctattcatt tctgtctctt tcatttccca 7800 tacctgctcc ccttttgtta attatgtcta tgaccctcca ttttaattgt ctttttaaat 7860 gcaagctaag atcaaaattg ttaactcatt tttctcacat ttaagcattt ccacaacatt 7920 agcttattgt gtgcgtaaag aaggctactg accatcccac tcaacaacat tttgtmgcaa 7980 aatcactaat gcttaatcac aatttgggta ttactatggt atcaaaaagc aaacaatagt 8040 cagcatcaaa catgaaagag gaattctgca agtaaaaccc tagcgtgttc aattaaactg 8100 acaatgatga gaaatgtcaa aaatggcgac tgcccatcaa gttactatat aaagaataca 8160 agatatcatc ctaaatgaaa atgctgaatc agcttctatc ttcaaaatgg cgtaaatttg 8220 atagaacttc agtattatac aagtaggaaa aagaagaatt ggaattgccc aaccagcaga 8280 acaaaatcwg aggaaaatca acaactgagt gtaggagaaa ctccagcatc accaaaacca 8340 gctgctcctg ctatctacag ccttcatgga agtagatacc aagggcattc gtccatactc 8400 catggcaaat ctgttcacac actgggatcg tttttcagta tgacctccca agctactgat 8460 tccagttgaa ccaatctcaa atatcttacc tgcaatggca ggtcaagatg catcttcaga 8520 ataaatttaa ttaagaaaag aaatgaaaag gcaatttcaa acagacattg gagcatactt 8580 cttctgccgc aactttatca cttaaatttc cattacctaa tgctaaatac aagtacagct 8640 ttcctcacca ttacttaaag aggatgagtt aacaggatac agaggactgg tgtgaaatat 8700 gcatagaaac taatgtctgc atcaattgag gacaagataa gagaaagttg gctaagatga 8760 ttagaccatg tgcaaagtcg aagagaaaaa caatgtggat cgaagcaata agaaaaatac 8820 ataatggcct gtcatttaac aaaagacatg ggcagaaata gagcatgcag ccagccccaa 8880 gttatagagg gtataaagat tttgttgtgt taaattgtgt attactttgt taaacaagat 8940 ctcttttttg cagtttgcag cactctgact ttcatttcaa ttaactgcaa gcctttgttg 9000 tcaatatgag tttctcctaa acatattaat aactatgatc tctgtgcatt gcaaggaata 9060 aaacactagt gaaatgatta aacaaaaagt acaggatgag aaaaagaaat caaagaagta 9120 cacaatttag ttcatatgta tcatttacct ttcacccata tagggggaga accagtcaca 9180 tttgcaacaa ggaatgacat tgcaatatct tcacagttcc tggtggacca ataccaatat 9240 tcaggggaga aagagaatac atgagcaatg caattcaaca atcagggaag aaaatggtaa 9300 acaatatgct ctatgtagat taatcaaggg gacaagaaac ctgtttttgg ttgtaaattc 9360 tctgattgag gctggcatct cattcgtata cagactgaaa tactttttat ggaaaaaagc 9420 tgccttcgaa agtaccatac tgtatgtacc cgtccaccaa acagaccacc atccagcata 9480 aacataggaa cctgtattgc ctttctgcat ataaaaactt gccagttaat agaaggaatg 9540 tttgacatag ataacatctt tcaggcagct ggctttctgg ctcctatttc aatccaatgg 9600 aaaaaccgag gactgtagat atgaaagatc atgccaacaa aatcaaattt gacccacaaa 9660 ctgatacttc caagtcccaa gttttaccat aaatcactgg aaaaaaatac atcattcaat 9720 tatttaccat ctacaacaac aagaagctca gtatgatgtg tcacaagttc ttcaatgtac 9780 atcttcacaa gttgacagta gagtaattca tgccagagat ccaattataa aatacatgat 9840 aatgaaatgg gaagaggata gaatattttt tttttttttg ataagtaaac aagattgcat 9900 taaaaaaggc tagacgccac aaagcataca gggagtatac aagatggata cagcctcaaa 9960 aaagaaaagg accagaaaga actacctccc ctcaagtgga agctatccac tccaaaaagc 10020 ctataaggga gaaagcctcc tcacctaaat acactttggc ccaattccat aaattacaaa 10080 caaaagaatt ctttaacctc tgaacattca ccacaccccc cctaaaggct aacctatttc 10140 tctccttcca aaccgtccaa aaaatacaca acggaatgga tttccatatc tgtttccttt 10200 tcttcccaac aaaagagccc ctccaggagg ttaaagcctc cttcaccgtt tctggaaaac 10260 ccacttaata tctaacaacc caaaaataat atcccaaagg gctctagcca ctatacaatg 10320 taaaagaata tgatttacat tctcttctrc acaaccacac aaaaaacaag cartttggaa 10380 gttgcacccc tccttatctg ragcytatcc agagtgagca ccttccccca mygtagcctc 10440 ccaacgccaa aaaactaacc kaagacgtta acgttggtam sgtctacggt accgtaccta 10500 cctaccctac ctaacttacc tt 10522 // |
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