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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AM168394; SV 1; linear; genomic DNA; STD; PRO; 467 BP.
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AC   AM168394;
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DT   15-MAY-2007 (Rel. 91, Created)
DT   15-MAY-2007 (Rel. 91, Last updated, Version 1)
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DE   Bradyrhizobium japonicum partial nodZ gene for fucosyltransferase
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KW   fucosyltransferase; nodZ gene.
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OS   Bradyrhizobium japonicum
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
OC   Bradyrhizobiaceae; Bradyrhizobium.
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RN   [1]
RP   1-467
RA   Moulin L.;
RT   ;
RL   Submitted (05-DEC-2005) to the EMBL/GenBank/DDBJ databases.
RL   Moulin L., LSTM (IRD/CIRAD/INRA/AGROM/UMII), Institut de Recherche et
RL   Developpement, TA10/J Campus de Baillarguet, 34398 Montpellier cedex 5,
RL   FRANCE.
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RN   [2]
RA   Stepkowski T., Hughes C.E., Markiewicz L., Gurda D., Chlebicka A.,
RA   Moulin L.;
RT   "Phylogenetic analyses of nodulation genes reveal biogeographic pattern
RT   reflecting the origin of lupin nodulating Bradyrhizobium strains";
RL   Unpublished.
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RN   [3]
RX   DOI; 10.1128/AEM.02125-06
RX   PUBMED; 17400786.
RA   Stepkowski T., Hughes C.E., Law I.J., Markiewicz L., Gurda D.,
RA   Chlebicka A., Moulin L.;
RT   "Diversification of lupine Bradyrhizobium strains: evidence from nodulation
RT   gene trees";
RL   Appl. Environ. Microbiol. 73(10):3254-3264(2007).
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FH   Key             Location/Qualifiers
FH
FT   source          1..467
FT                   /organism="Bradyrhizobium japonicum"
FT                   /host="Glycine max"
FT                   /strain="type strain: USDA6"
FT                   /mol_type="genomic DNA"
FT                   /country="Japan"
FT                   /db_xref="taxon:375"
FT   CDS             <1..>467
FT                   /codon_start=2
FT                   /transl_table=11
FT                   /gene="nodZ"
FT                   /product="fucosyltransferase"
FT                   /db_xref="GOA:A5A9M8"
FT                   /db_xref="InterPro:IPR008716"
FT                   /db_xref="UniProtKB/TrEMBL:A5A9M8"
FT                   /protein_id="CAJ44653.1"
FT                   /translation="LAAAWRFAKQTGRTLAIDWRGSCYLDEPFTNAFPVFFEPVEDIGG
FT                   VRVICDDDINTRSFPGPFFPTWWNKPSFDCIYRPDEQIFRERDQLDQLFQSQRDSDANT
FT                   VVCDACLMWRCDQEAEREIFRSIKPRPEIQARIDAIYREHFEPYSVIGIHV"
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SQ   Sequence 467 BP; 113 A; 116 C; 124 G; 114 T; 0 other;
     actcgcggca gcctggcgat ttgcaaagca gacaggacgg acgctagcca ttgattggcg        60
     gggatcttgt tatcttgatg aaccattcac caatgccttt ccagtcttct tcgaaccggt       120
     tgaagacatt ggcggagtgc gagtaatttg cgatgacgac atcaatacgc gttcgtttcc       180
     aggaccattc tttccaacat ggtggaacaa gccatctttc gattgcatct atcgaccgga       240
     cgagcagatt ttcagggaac gcgatcaact cgatcaactg ttccaaagtc agagagatag       300
     tgacgctaac acggttgtgt gtgatgcctg cctgatgtgg cgctgcgatc aggaagcgga       360
     acgcgaaatc ttccggagta ttaagccgcg gcctgaaatt caggcccgga ttgatgctat       420
     ctaccgcgag cactttgagc cgtacagcgt aatcggcatt catgtcc                     467
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