spacer
spacer
EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AM039444; SV 1; linear; genomic DNA; STD; PRO; 1335 BP.
XX
AC   AM039444;
XX
DT   06-APR-2007 (Rel. 91, Created)
DT   23-JUL-2008 (Rel. 96, Last updated, Version 3)
XX
DE   Elizabethkingia meningoseptica NAGA gene for
DE   alpha-N-acetylgalactosaminidase, strain ATCC33958
XX
KW   alpha-N-acetylgalactosaminidase; NAGA gene.
XX
OS   Elizabethkingia meningoseptica
OC   Bacteria; Bacteroidetes; Flavobacteria; Flavobacteriales;
OC   Flavobacteriaceae; Elizabethkingia.
XX
RN   [1]
RP   1-1335
RA   Liu P.;
RT   ;
RL   Submitted (09-JUN-2005) to the EMBL/GenBank/DDBJ databases.
RL   Liu P., Enzymology, ZymeQuest, 100 Cummings Center, Suite 436H, Beverly, MA
RL   01915-6122, USA.
XX
RN   [3]
RX   DOI; 10.1038/nbt1298
RX   PUBMED; 17401360.
RA   Liu Q.P., Sulzenbacher G., Yuan H., ennett E.P., Pietz G., Saunders K.,
RA   Spence J., Nudelman E., Levery S.B., White T., Neveu J.M., Lane W.S.,
RA   Bourne Y., Olsson M.L., Henrissat B., Clausen H.;
RT   "Bacterial glycosidases for the production of universal red blood cells";
RL   Nature Biotech 25(4):454-464(2007).
XX
DR   StrainInfo; 35903; ATCC 33958.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1335
FT                   /organism="Elizabethkingia meningoseptica"
FT                   /strain="ATCC33958"
FT                   /mol_type="genomic DNA"
FT                   /db_xref="taxon:238"
FT   CDS             1..1335
FT                   /transl_table=11
FT                   /gene="NAGA"
FT                   /product="alpha-N-acetylgalactosaminidase"
FT                   /function="exo-hexosaminidase"
FT                   /db_xref="GOA:A4Q8F7"
FT                   /db_xref="InterPro:IPR000683"
FT                   /db_xref="InterPro:IPR016040"
FT                   /db_xref="PDB:2IXA"
FT                   /db_xref="PDB:2IXB"
FT                   /db_xref="UniProtKB/Swiss-Prot:A4Q8F7"
FT                   /experiment="experimental evidence, no additional details
FT                   recorded"
FT                   /protein_id="CAJ01376.1"
FT                   /translation="MGALIPSSTLFNIFDFNPKKVRIAFIAVGLRGQTHVENMARRDDV
FT                   EIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSSPWEWH
FT                   HEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQTGVPLMALENVCYRRDVMAILNM
FT                   VRKGMFGELVHGTGGYQHDLRPVLFNSGINGKNGDGVEFGEKAFSEAKWRTNHYKNRNG
FT                   ELYPTHGVGPLHTMMDINRGNRLLRLSSFASKARGLHKYIVDKGGESHPNAKVEWKQGD
FT                   IVTTQIQCHNGETIVLTHDTSLQRPYNLGFKVQGTEGLWEDFGWGEAAQGFIYFEKIMN
FT                   HSHRWDSSEKWIKEYDHPMWKKHEQKAVGAGHGGMDYFLDNTFVECIKRNEAFPLDVYD
FT                   LATWYSITPLSEKSIAENGAVQEIPDFTNGKWKNAKNTFAINDDY"
XX
SQ   Sequence 1335 BP; 459 A; 218 C; 307 G; 351 T; 0 other;
     atgggcgcct taattccctc gagcacttta ttcaacattt tcgatttcaa ccctaaaaag        60
     gtaagaatag cttttatcgc tgttggttta cgtggacaaa ctcacgtaga aaatatggca       120
     agacgtgatg atgtggagat tgtagcattt gcagatccgg atccttacat ggttggacgt       180
     gcacaggaaa ttctgaaaaa gaatggcaag aagcctgcta aagtttttgg aaatggtaat       240
     gacgattaca aaaacatgct taaagataaa aatattgatg ctgtttttgt atcatctcca       300
     tgggaatggc accacgaaca tggcgtagca gctatgaaag ctggtaaaat tgtcggaatg       360
     gaagtttccg gtgctataac actggaggaa tgttgggatt acgtaaaagt atctgaacaa       420
     accggagttc cgttaatggc attagaaaat gtatgctaca gacgcgatgt aatggctatc       480
     ctgaatatgg taagaaaagg aatgttcgga gaacttgttc acggaacagg aggctaccag       540
     cacgatttaa gaccagtttt attcaacagt ggcatcaatg gtaaaaacgg agatggtgtt       600
     gaattcggag aaaaagcatt tagtgaagcc aagtggagaa cgaaccacta taaaaacaga       660
     aacggggaac tttaccctac tcatggtgtt ggtccattgc atacaatgat ggatattaac       720
     cgtggaaaca gattactaag attatcatct tttgcatcca aagcaagagg attacataaa       780
     tacatcgtgg ataaaggtgg agaaagccat cctaatgcaa aagtagaatg gaaacaagga       840
     gatattgtta ccactcagat ccagtgtcac aacggagaaa ctattgtatt aacacacgat       900
     accagcttac aaagaccata taacttagga ttcaaagttc aaggtacaga aggtctttgg       960
     gaagatttcg gctggggaga agcagcacaa ggatttattt acttcgagaa gattatgaac      1020
     cattctcaca gatgggatag ttctgaaaaa tggattaaag aatatgatca ccctatgtgg      1080
     aagaagcatg agcagaaagc tgttggtgcg ggtcatggcg gtatggatta cttcttagat      1140
     aatacgttcg tagaatgtat taaaagaaat gaagcattcc cgttagatgt ctatgatctg      1200
     gctacatggt attccattac tcctcttagt gaaaagtcta tcgctgaaaa cggtgccgtt      1260
     caggaaattc ctgattttac aaacggtaaa tggaagaatg ctaaaaatac atttgcaata      1320
     aatgacgact actaa                                                       1335
//
spacer
spacer