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EBI DbfetchID AL627276; SV 1; linear; genomic DNA; STD; PRO; 274050 BP. XX AC AL627276; XX DT 25-OCT-2001 (Rel. 69, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 5) XX DE Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete DE chromosome; segment 12/20 XX KW . XX OS Salmonella enterica subsp. enterica serovar Typhi OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; OC Enterobacteriaceae; Salmonella. XX RN [1] RP 1-274050 RX DOI; 10.1038/35101607 RX PUBMED; 11677608. RA Parkhill J., Dougan G., James K.D., Thomson N.R., Pickard D., Wain J., RA Churcher C., Mungall K.L., Bentley S.D., Holden M.T.G., Sebaihia M., RA Baker S., Basham D., Brooks K., Chillingworth T., Connerton P., Cronin A., RA Davis P., Davies R.M., Dowd L., White N., Farrar J., Feltwell T., RA Hamlin N., Haque A., Hien T.T., Holroyd S., Jagels K., Krogh A., RA Larsen T.S., Leather S., Moule S., O'Gaora P., Parry C., Quail M., RA Rutherford K., Simmonds M., Skelton J., Stevens K., Whitehead S., RA Barrell B.G.; RT "Complete genome sequence of a multiple drug resistant Salmonella enterica RT serovar Typhi CT18"; RL Nature 413(6858):848-852(2001). XX RN [2] RP 1-274050 RA Parkhill J.; RT ; RL Submitted (25-OCT-2001) to the EMBL/GenBank/DDBJ databases. RL Submitted on behalf of the Salmonalla sequencing team, Sanger Centre, RL Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UK. XX DR EMBL-CON; AL513382. DR RFAM; RF01395; isrL. DR SILVA-LSU; AL627276. DR SILVA-SSU; AL627276. XX CC E-mail: parkhill@sanger.ac.uk CC CC Notes: CC Details of S. typhi sequencing at the Sanger Centre CC are available on the World Wide Web. CC (URL, http://www.sanger.ac.uk/Projects/S_typhi/) XX FH Key Location/Qualifiers FH FT source 1..274050 FT /organism="Salmonella enterica subsp. enterica serovar FT Typhi" FT /strain="CT18" FT /mol_type="genomic DNA" FT /db_xref="taxon:90370" FT RBS 197..201 FT /note="possible RBS" FT CDS 208..897 FT /transl_table=11 FT /gene="STY2840" FT /gene_synonym="ung" FT /product="uracil-DNA glycosylase" FT /EC_number="3.2.2.-" FT /note="Orthologue of E. coli ung (UNG_ECOLI); Fasta hit to FT UNG_ECOLI (228 aa), 91% identity in 228 aa overlap" FT /db_xref="GOA:P67074" FT /db_xref="InterPro:IPR002043" FT /db_xref="InterPro:IPR005122" FT /db_xref="InterPro:IPR018085" FT /db_xref="UniProtKB/Swiss-Prot:P67074" FT /protein_id="CAD05831.1" FT /translation="MATELTWHDVLADEKQQPYFINTLHTVAGERQSGITVYPPQKDVF FT NAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAPPPSLVNMYKELEASIPGFV FT RPAHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLL FT WGSHAQKKGAIIDPQRHHILKAPHPSPLSAHRGFFGCNHFALTNQWLEQHGEKTIDWTP FT VLPAESE" FT misc_feature 322..867 FT /note="Pfam match to entry PF00315 UNG, Uracil-DNA FT glycosylase, score 451.20, E-value 9e-132" FT misc_feature 376..405 FT /note="PS00130 Uracil-DNA glycosylase signature" FT CDS complement(1013..2050) FT /transl_table=11 FT /gene="STY2841" FT /gene_synonym="yfiF" FT /product="putative RNA methyltransferase" FT /note="Orthologue of E. coli yfiF (YFIF_ECOLI); Fasta hit FT to YFIF_ECOLI (345 aa), 88% identity in 345 aa overlap" FT /db_xref="GOA:Q8XFT1" FT /db_xref="HSSP:1GZ0" FT /db_xref="InterPro:IPR001537" FT /db_xref="InterPro:IPR013123" FT /db_xref="InterPro:IPR016479" FT /db_xref="UniProtKB/TrEMBL:Q8XFT1" FT /protein_id="CAD05832.1" FT /translation="MNDELKNKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPAKSRTD FT GGRRPARDERNNQSRDRKHETSPWRTVSRAPGDETPEKVDHGGISGKSFIDPEVLRRQR FT AEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELA FT KASGTEHHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCAHFG FT VKGVVVQDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSDRGQ FT ALFSTTLPEKMVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAEWW FT RQNKA" FT misc_feature complement(1040..1462) FT /note="Pfam match to entry PF00588 SpoU_methylase, SpoU FT rRNA Methylase family, score 181.50, E-value 1.4e-50" FT RBS 2244..2248 FT /note="possible RBS" FT CDS 2254..2673 FT /transl_table=11 FT /gene="STY2842" FT /gene_synonym="yfiG" FT /gene_synonym="trxC" FT /product="thioredoxin 2" FT /note="Orthologue of E. coli yfiG (THI2_ECOLI); Fasta hit FT to THI2_ECOLI (139 aa), 94% identity in 139 aa overlap" FT /db_xref="GOA:Q8Z4J6" FT /db_xref="HSSP:1DBY" FT /db_xref="InterPro:IPR005746" FT /db_xref="InterPro:IPR006662" FT /db_xref="InterPro:IPR012335" FT /db_xref="InterPro:IPR012336" FT /db_xref="InterPro:IPR013766" FT /db_xref="InterPro:IPR015467" FT /db_xref="InterPro:IPR017936" FT /db_xref="InterPro:IPR017937" FT /db_xref="UniProtKB/TrEMBL:Q8Z4J6" FT /protein_id="CAD05833.1" FT /translation="MNTVCTHCQAINRIPGDRLQDAAKCGRCGHELFDGEVINATGETL FT DKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAEERSGKVRFVKVNTEAERELSARFGI FT RSIPMIMIFKHGQVVDMLNGAVPKAPFDSWLNEAL" FT misc_feature 2353..2670 FT /note="Pfam match to entry PF00085 thiored, Thioredoxin, FT score 116.00, E-value 1.1e-33" FT misc_feature 2419..2475 FT /note="PS00194 Thioredoxin family active site" FT CDS 2746..3426 FT /transl_table=11 FT /gene="STY2843" FT /product="conserved hypothetical protein" FT /note="Orthologue of E. coli YFIP_ECOLI; Fasta hit to FT YFIP_ECOLI (232 aa), 88% identity in 226 aa overlap" FT /db_xref="InterPro:IPR005636" FT /db_xref="UniProtKB/TrEMBL:Q8Z4J5" FT /protein_id="CAD05834.1" FT /translation="MTNNAVLQLRAERLARATRPFLARGNRVRRCQRCLLPLKSCLCDT FT LTPSQAKSRFCLVMFDTEPMKPSNTGRLIADILPDTAAFQWSRTEPPQALLELVQHPDY FT QPIVVFPASYAGEAREVISTPPAGKPPLFIMLDGTWPEARKMFRKSPYLDHLPVISVDL FT SRLSAYRLREIHAEGQYCTAEVAIALLDLAGDPEAATSLGEHFIRFKTRYLAGKTQHPG FT NVTA" FT CDS 3480..6140 FT /transl_table=11 FT /gene="STY2844" FT /product="putative acyl-CoA synthetase" FT /note="Similar to proteins from bacteria, archaea and FT eukaryotes e.g. Entamoeba histolytica acetyl-CoA synthetase FT TR:Q9NAT4 (EMBL:AF286346) (713 aa) fasta scores: E(): 0, FT 34.1% id in 721 aa and Giardia lamblia acetyl-CoA FT synthetase TR:Q9Y1N2 (EMBL:AF107206) (726 aa) fasta scores: FT E(): 0, 30.0% id in 700 aa" FT /note="Orthologue of E. coli YFIQ_ECOLI; Fasta hit to FT YFIQ_ECOLI (886 aa), 92% identity in 886 aa overlap" FT /db_xref="GOA:Q8Z4J4" FT /db_xref="InterPro:IPR000182" FT /db_xref="InterPro:IPR003781" FT /db_xref="InterPro:IPR011761" FT /db_xref="InterPro:IPR016040" FT /db_xref="InterPro:IPR016102" FT /db_xref="InterPro:IPR016181" FT /db_xref="UniProtKB/TrEMBL:Q8Z4J4" FT /protein_id="CAD05835.1" FT /translation="MSQQGLEALLRPKSIAVIGASMKPHRAGYLMMRNLLAGGFNGPVL FT PVTPAWKAVLGVMAWPDIASLPFTPDLAILCTNASRNLALLDALGAKGCKTCIILSAPT FT SQHEELLASARHYKMRLLGPNSLGLLAPWQGLNASFSPVPIKQGKLAFISQSAAVSNTI FT LDWAQQREMGFSYFIALGDSLDIDVDELLDYLARDSKTSAILLYLEQLSDARRFVSAAR FT SASRNKPILVIKSGRSPAAQRLLNTSAGMDPAWDAAIQRAGLLRVQDTHELFSAVETLS FT HMRPLHGDRLMIISNGAAPAALALDELWSRNGKLATLSEETCLQLRQTLPAHIDIANPL FT DLCDDASSEHYVKTLDILLASQDFDALMVIHSPSAAAPGTESAHALIETIKRHPRGKFV FT TLLTNWCGEFSSQEARRLFSEAGLPTYRTPEGTITAFMHMVEYRRNQKQLRETPALPSN FT LTSNTAEAHNLLQRAIAEGATSLDTHEVQPILHAYGLHTLPTWIASDSAEAVHIAEQIG FT YPVALKLRSPDIPHKSEVQGVMLYLRTASEVQQAANAIFDRVKMAWPQARIHGLLVQSM FT ANRAGAQELRVVVEHDPVFGPLIMLGEGGVEWRPEEQAVVALPPLNMNLARYLVIQGIK FT QRKIRARSALRPLDIVGLSQLLVQVSNLIVDCPEIQRLDIHPLLASASEFTALDVTLDI FT APFDGDNESRLAVRPYPHQLEEWVEMKNGDRCLFRPILPEDEPQLRQFIAQVTKEDLYY FT RYFSEINEFTHEDLANMTQIDYDREMAFVAVRRMDNAEEILGVTRAISDPDNVDAEFAV FT LVRSDLKGLGLGRRLMEKLIAYTRDHGLKRLNGITMPNNRGMVALARKLGFQVDIQLDE FT GIVGLTLNLAKCDES" FT misc_feature 5844..6071 FT /note="Pfam match to entry PF00583 Acetyltransf, FT Acetyltransferase (GNAT) family, score 59.00, E-value FT 9.9e-14" FT CDS 6255..7610 FT /transl_table=11 FT /gene="STY2845" FT /gene_synonym="pssA" FT /product="CDP-diacylglycerol-serine FT O-phosphatidyltransferase" FT /EC_number="2.7.8.8" FT /note="Orthologue of E. coli pssA (PSS_ECOLI); Fasta hit to FT PSS_ECOLI (451 aa), 94% identity in 451 aa overlap" FT /db_xref="GOA:Q8XFW5" FT /db_xref="InterPro:IPR001736" FT /db_xref="InterPro:IPR016270" FT /db_xref="UniProtKB/TrEMBL:Q8XFW5" FT /protein_id="CAD05836.1" FT /translation="MLSKFKRNKHQQHLAQLPKISQSVDDVDFFYTPATFRETLLEKIA FT SATQRICIVALYLEQDDGGKGILDALYAAKRQRPELDVRVLVDWHRAQRGRIGAAASNT FT NADWYCRLAQENPGIDVPVYGVPINTREALGVLHFKGFIIDDSVLYSGASLNDVYLHQH FT DKYRYDRYQLIRNRQMADIMFDWVTQNLMNGRGVNRLDNTQRPKSPEIKNDIRLYRQEL FT RDASYHFQGDANDEQLSVTPLVGLGKSSLLNKTIFHLMPCAEHKLTICTPYFNLPAVLV FT RNIIQLLRDGKKVEIIVGDKTANDFYIPEDEPFKIIGALPYLYEINLRRFLSRLQYYVN FT TDQLVVRLWKDDDNTYHLKGMWVDDKWMLLTGNNLNPRAWRLDLENAILIHDPKQELAP FT QREKELELIRTHTTIVKHYRDLQSIADYPIKVRKLIRRLRRIRIDRLISRIL" FT misc_feature 6651..6731 FT /note="Pfam match to entry PF00614 PLDc, Phospholipase D. FT Active site motif, score 28.70, E-value 0.00014" FT misc_feature 7308..7391 FT /note="Pfam match to entry PF00614 PLDc, Phospholipase D. FT Active site motif, score 35.90, E-value 9.3e-07" FT RBS 7643..7647 FT /note="possible RBS" FT CDS 7655..7978 FT /transl_table=11 FT /gene="STY2846" FT /gene_synonym="yfiM" FT /product="conserved hypothetical protein" FT /note="Orthologue of E. coli yfiM (YFIM_ECOLI); Fasta hit FT to YFIM_ECOLI (90 aa), 80% identity in 90 aa overlap" FT /db_xref="InterPro:IPR017028" FT /db_xref="UniProtKB/TrEMBL:Q8XEY1" FT /protein_id="CAD05837.1" FT /translation="MRVLIPFTVLFLSGCSHLANDHWSGQDKAQHFMASAMLSAAGNEY FT ARHQGVSPDRSAAIGLMFSLSLGASKELWDSRPEGSGWSWKDFVWDVAGATTGYAIWQM FT ARY" FT CDS complement(7975..9276) FT /transl_table=11 FT /gene="STY2847" FT /gene_synonym="kgtP" FT /product="alpha-ketoglutarate permease" FT /note="Fasta hit to PROP_ECOLI (500 aa), 32% identity in FT 418 aa overlap" FT /note="Fasta hit to YDFJ_ECOLI (427 aa), 32% identity in FT 396 aa overlap" FT /note="Fasta hit to YHJE_ECOLI (440 aa), 32% identity in FT 434 aa overlap" FT /note="Fasta hit to SHIA_ECOLI (438 aa), 31% identity in FT 431 aa overlap" FT /note="Orthologue of E. coli kgtP (KGTP_ECOLI); Fasta hit FT to KGTP_ECOLI (432 aa), 88% identity in 433 aa overlap" FT /db_xref="GOA:Q8Z4J3" FT /db_xref="InterPro:IPR004736" FT /db_xref="InterPro:IPR005828" FT /db_xref="InterPro:IPR005829" FT /db_xref="InterPro:IPR016196" FT /db_xref="UniProtKB/TrEMBL:Q8Z4J3" FT /protein_id="CAD05838.1" FT /translation="MAEIIQRIDKNNAEAPEMRRHIWAIVGASSGNLVEWFDFYVYSFC FT SLYFAHIFFPSSNTTTQLLQTAGVFAAGFLMRSIGGWLFGRIADRRGRKASMLISVCMM FT CMGSLVIACLPGYDTIGTWAPALLLIARLFQGLSVGGEYGTSATYMSEVALEGRKGFFA FT SFQYVTLIGGQLLALLVVVILQQVLEDAELRAWGWRIPFALGAVLAVVALWLRRQLDET FT SKHETRALKEAGSLKGLWRNRKAFLMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANV FT ASGIMTAALCVFMLVQPLFGALSDKIGRRTSMLCFGALATLFTVPILSALQNVTSPYAA FT FALVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKS FT VGMESSFFWYVTAMAVLAFLVSLMLHRKGKGLRL" FT misc_feature complement(7978..9210) FT /note="Pfam match to entry PF00083 sugar_tr, Sugar (and FT other) transporter, score 342.50, E-value 4.8e-99" FT misc_feature complement(8800..8877) FT /note="PS00217 Sugar transport proteins signature 2" FT CDS complement(9380..9835) FT /transl_table=11 FT /gene="STY2848" FT /product="conserved hypothetical protein" FT /note="Similar to Deinococcus radiodurans hypothetical FT protein DR2262 TR:Q9RS65 (EMBL:AE002058) (156 aa) fasta FT scores: E(): 6.2e-24, 49.7% id in 155 aa" FT /db_xref="UniProtKB/TrEMBL:Q8Z4J2" FT /protein_id="CAD05839.1" FT /translation="MAIKPFNYQQDFSSIDFRQQPELYQVGRGEQGGLLVEPYKSEILP FT FWRYKDEASAMKSAEQIYQLFEAYRQQDDFVGMDMARKFIQMGYTRARRYANYKGGKKY FT AEDGSLNTRGNDPIKAAAATVFKGWWDKIRQDEDYLKRKRQHQARWG" FT RBS complement(9843..9846) FT /note="possible RBS" FT rRNA complement(10258..10377) FT /gene="5S_rRNA" FT /note="hit to 5S_rRNA 1..120 score: 582 percent id: FT 98.33" FT rRNA complement(10478..13483) FT /gene="23S_rRNA" FT /note="hit to 23S_rRNA 487..2904 score: 11314 percent id: FT 96.69" FT /note="hit to 23S_rRNA 1..540 score: 2601 percent id: FT 97.96" FT tRNA complement(13666..13741) FT /note="tRNA Ala anticodon TGC, Cove score 88.77" FT tRNA complement(13853..13929) FT /note="tRNA Ile anticodon GAT, Cove score 88.37" FT rRNA complement(13999..15540) FT /gene="16S_rRNA" FT /note="hit to 16S_rRNA 1..1542 score: 7406 percent id: FT 97.92" FT CDS complement(15996..18569) FT /transl_table=11 FT /gene="STY2849" FT /gene_synonym="clpB" FT /product="ClpB protein (heat shock protein f84.1)" FT /note="Fasta hit to CLPA_ECOLI (758 aa), 37% identity in FT 863 aa overlap" FT /note="Orthologue of E. coli clpB (CLPB_ECOLI); Fasta hit FT to CLPB_ECOLI (857 aa), 97% identity in 857 aa overlap" FT /db_xref="GOA:Q7AMH5" FT /db_xref="InterPro:IPR001270" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR003959" FT /db_xref="InterPro:IPR004176" FT /db_xref="InterPro:IPR013093" FT /db_xref="InterPro:IPR017730" FT /db_xref="InterPro:IPR018368" FT /db_xref="InterPro:IPR019489" FT /db_xref="UniProtKB/Swiss-Prot:Q7AMH5" FT /protein_id="CAD05840.1" FT /translation="MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGS FT IRPLLTSAGINAGQLRTAIDQALSRLPQVEGTGGDVQPSSELVRVLNLCDKLAQKRGDN FT FISSELFVLAALESRGTLTDLLKSAGATTANITQAIEQMRGGESVNDQGAEDQRQALKK FT YTVDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR FT IINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELH FT TMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAE FT PSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAAS FT SIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELDDKERQYSEL FT EEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLEAAT FT QSEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLEGEREKLLRMEQELHSRVIGQNEA FT VEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMS FT EFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL FT DDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYGRMKEMVLGVVSQNFRPEF FT INRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSANGYDPVY FT GARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEANDDRIVAVQ" FT misc_feature complement(16032..16982) FT /note="Pfam match to entry PF00495 clpA_B, Chaperonin FT clpA/B, score 840.30, E-value 6.6e-249" FT misc_feature complement(16623..16679) FT /note="PS00871 Chaperonins clpA/B signature 2" FT misc_feature complement(16734..16757) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)" FT misc_feature complement(17001..17024) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)" FT misc_feature complement(17652..17690) FT /note="PS00870 Chaperonins clpA/B signature 1" FT misc_feature complement(17931..17954) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)" FT RBS complement(18574..18578) FT /note="possible RBS" FT CDS complement(18699..19430) FT /transl_table=11 FT /gene="STY2850" FT /gene_synonym="yfiH" FT /product="conserved hypothetical protein" FT /note="Orthologue of E. coli yfiH (YFIH_ECOLI); Fasta hit FT to YFIH_ECOLI (243 aa), 87% identity in 243 aa overlap" FT /db_xref="InterPro:IPR003730" FT /db_xref="InterPro:IPR011324" FT /db_xref="PDB:1RW0" FT /db_xref="UniProtKB/TrEMBL:Q8Z4J1" FT /protein_id="CAD05841.1" FT /translation="MNALIVPQWPLPKGVAACSSTRIGGVSLSPYDSLNLGAHCGDNPE FT HVEENRKRLFAAGNLPSKPVWLEQVHGKNVLRLTGEPYASKRADASYSNTPGTVCAVMT FT ADCLPVLFCNREGTEVAAAHAGWRGLCEGVLEETVTCFADKPENIIAWLGPAIGPAAFE FT VGPEVRDAFLAKDAQADSAFLPHGEKFLADIYQLARQRLANTGVEHVYGGDRCTFSESE FT TFFSYRRDKTTGRMASFIWLI" FT CDS complement(19427..20407) FT /transl_table=11 FT /gene="STY2851" FT /gene_synonym="sfhB" FT /gene_synonym="rluD" FT /product="ftsH suppressor protein SfhB" FT /EC_number="4.2.1.70" FT /note="Fasta hit to RLUC_ECOLI (319 aa), 31% identity in FT 320 aa overlap" FT /note="Orthologue of E. coli sfhB (RLUD_ECOLI); Fasta hit FT to RLUD_ECOLI (326 aa), 93% identity in 326 aa overlap" FT /db_xref="GOA:P65837" FT /db_xref="InterPro:IPR002942" FT /db_xref="InterPro:IPR006145" FT /db_xref="InterPro:IPR006224" FT /db_xref="InterPro:IPR006225" FT /db_xref="InterPro:IPR020103" FT /db_xref="UniProtKB/Swiss-Prot:P65837" FT /protein_id="CAD05842.1" FT /translation="MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILNQRV FT LVNGQLCDKPKEKVLGGERVAIDAEIDEEIRFEAQDIPLDIVYEDDDILVINKPRDLVV FT HPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQ FT LREITREYEAVAIGHMTAGGTVNEPISRHPTKRTHMSVHPMGKPAVTHYRIMEHFRVHT FT RLRLRLETGRTHQIRVHMAHITHPLVGDQVYGGRPRPPKGASEEFISTLRKFDRQALHA FT TMLRLYHPVSGIEMEWHAPIPQDMVDLIDAMRADFEDHKDDVDWL" FT misc_feature complement(19682..20134) FT /note="Pfam match to entry PF00849 PseudoU_synth_2, RNA FT pseudouridylate synthase, score 237.40, E-value 2e-67" FT misc_feature complement(19961..20005) FT /note="PS01129 Rlu family of pseudouridine synthase FT signature" FT misc_feature complement(20213..20356) FT /note="Pfam match to entry PF01479 S4, S4 domain, score FT 54.60, E-value 2.1e-12" FT CDS 20539..21276 FT /transl_table=11 FT /gene="STY2852" FT /product="putative lipoprotein" FT /note="Similar to many putative lipoproteins and to FT Neisseria meningitidis competence lipoprotein comL NMB0703 FT TR:AAF41120 (EMBL:AE002425) (267 aa) fasta scores: E(): FT 2.2e-31, 38.5% id in 244 aa, and to Neisseria gonorrhoeae FT competence lipoprotein coml precursor SW:COML_NEIGO FT (Q50985) (267 aa) fasta scores: E(): 9.8e-31, 37.7% id in FT 244 aa. Contains a probable N-terminal signal sequence" FT /note="Orthologue of E. coli YFIO_ECOLI; Fasta hit to FT YFIO_ECOLI (245 aa), 96% identity in 245 aa overlap" FT /db_xref="InterPro:IPR017689" FT /db_xref="UniProtKB/TrEMBL:Q8Z4J0" FT /protein_id="CAD05843.1" FT /translation="MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQD FT GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFMRLNPTHPN FT IDYVMYMRGLTNMALDDSVLQGFFGVDRSDRDPQHARAAFNDFSKLVRSYPNSQYTTDA FT TKRLVFLKDRLAKYEYSVAEYYTARGAWVAVVNRVEGMLRNYPDTQATRDALPLMENAY FT RQMQLNAQADKVAKIIAANSKNT" FT misc_feature 20566..20598 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site" FT RBS 21534..21540 FT /note="possible RBS" FT CDS 21548..21886 FT /transl_table=11 FT /gene="STY2853" FT /gene_synonym="yfiA" FT /product="putative sigma(54) modulation protein" FT /note="Fasta hit to RP5M_ECOLI (95 aa), 40% identity in 96 FT aa overlap" FT /note="Orthologue of E. coli yfiA (YFIA_ECOLI); Fasta hit FT to YFIA_ECOLI (112 aa), 92% identity in 111 aa overlap" FT /db_xref="GOA:Q8XEX6" FT /db_xref="HSSP:1N3G" FT /db_xref="InterPro:IPR003489" FT /db_xref="UniProtKB/TrEMBL:Q8XEX6" FT /protein_id="CAD05844.1" FT /translation="MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKEP FT QGFIADATINTPNGHLVASAKHEDMYTAINELINKLERQLNKVQHKGEARRATASVKDA FT SFVEAEEE" FT CDS 21990..22037 FT /transl_table=11 FT /gene="STY2853a" FT /product="phe leader peptide" FT /note="Similar to Escherichia coli phe leader (attenuator) FT peptide PheL SW:LPF_ECOLI (P03057) (15 aa) fasta scores: FT E(): 0.0034, 73.3% id in 15 aa" FT /db_xref="UniProtKB/TrEMBL:Q8XF44" FT /protein_id="CAD05845.1" FT /translation="MKLTRFFFAFFFIFP" FT CDS 22137..23297 FT /transl_table=11 FT /gene="STY2854" FT /gene_synonym="pheA" FT /product="chorismate mutase-P/prephenate dehydratase" FT /EC_number="5.4.99.5" FT /EC_number="4.2.1.51" FT /note="Orthologue of E. coli pheA (PHEA_ECOLI); Fasta hit FT to PHEA_ECOLI (386 aa), 91% identity in 385 aa overlap" FT /db_xref="GOA:Q8Z4I9" FT /db_xref="HSSP:1ECM" FT /db_xref="InterPro:IPR001086" FT /db_xref="InterPro:IPR002701" FT /db_xref="InterPro:IPR008242" FT /db_xref="InterPro:IPR010952" FT /db_xref="InterPro:IPR018528" FT /db_xref="InterPro:IPR020822" FT /db_xref="UniProtKB/TrEMBL:Q8Z4I9" FT /protein_id="CAD05846.1" FT /translation="MTSENPLLALRDKISALDEELLALLAKRRALAIEVGQAKLLSHRP FT VRDIDRERALLDRLIHLGKAHHLDAHYITRLFQLIIEDSVLTQQALLQQHLNNTHPHSA FT RIAFLGPKGSYSHLAARQYAARHFEQFIESGCAKFTDIFHQVETGQADYAVVPIENTNS FT GAINDVYDLLQHTSLSIVGEMTVTIDHCVLVSGATDLNTIETVYSHPQPFQQCSKFLSR FT YPHWKIDYTESTSAAMEKVAQANSPRVAALGSEAGGMLHGLQVLERIAANQTQNITRFL FT VLARKAINVSDQVPAKTTLLIATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEE FT MFYLDIQANLESQVMQSALKELGEITRSMKVLGCYPSENVVPVEPA" FT misc_feature 22146..22403 FT /note="Pfam match to entry PF01817 Chorismate_mut, FT Chorismate mutase, score 115.30, E-value 1.1e-30" FT misc_feature 22452..23000 FT /note="Pfam match to entry PF00800 PDT, Prephenate FT dehydratase, score 301.10, E-value 1.4e-86" FT misc_feature 23109..23132 FT /note="PS00858 Prephenate dehydratase signature 2" FT CDS complement(23258..24166) FT /transl_table=11 FT /gene="STY2855" FT /product="conserved hypothetical protein" FT /note="Similar to eukaryotic regulacins e.g. Oryctolagus FT cuniculus regucalcin TR:Q9TTJ6 (EMBL:AB035445) (299 aa) FT fasta scores: E(): 1.2e-20, 29.3% id in 283 aa and Rattus FT norvegicus senescence marker protein-30 rgn or smp30 FT SW:SM30_RAT (Q03336) (299 aa) fasta scores: E(): 1.6e-20, FT 30.0% id in 280 aa" FT /db_xref="InterPro:IPR005511" FT /db_xref="InterPro:IPR011042" FT /db_xref="InterPro:IPR013658" FT /db_xref="UniProtKB/TrEMBL:Q8Z4I8" FT /protein_id="CAD05847.1" FT /translation="MTTPHLLFDYVGHLPECPTWSEDESALYWTDILEQEIYRYHPASG FT THSVLAFPEEVGCFALREQGGFIVAMRHAIWLADKNGLLQRKVCDNPSNTKLARFNDGG FT TDGDGRFYAGTFWAPGDYNGALLMRIDHDLTAKVIQCGIQGHNGLAFSPDNQWMYTSDT FT PNGVIYRTLLDKHGEPGKRELFRHFGEGEGLPDGAAMDSEGCYWSAMFDGWRVARFSPQ FT GEQLEEYRLPVRCPTMVCFGGADMKTLFITTTRENMSAQEVADYPLSGAIFTLQVAVAG FT MKKSRFIERQAGSTGTTFSLG" FT RBS complement(24173..24178) FT /note="possible RBS" FT CDS complement(24224..25345) FT /transl_table=11 FT /gene="STY2856" FT /gene_synonym="tyrA" FT /product="chorismate mutase/prephenate dehydrogenase" FT /EC_number="5.4.99.5" FT /EC_number="1.3.1.12" FT /note="Orthologue of E. coli tyrA (TYRA_ECOLI); Fasta hit FT to TYRA_ECOLI (373 aa), 95% identity in 372 aa overlap" FT /db_xref="GOA:Q8XFV5" FT /db_xref="InterPro:IPR002701" FT /db_xref="InterPro:IPR003099" FT /db_xref="InterPro:IPR008244" FT /db_xref="InterPro:IPR011277" FT /db_xref="InterPro:IPR016040" FT /db_xref="InterPro:IPR020822" FT /db_xref="UniProtKB/TrEMBL:Q8XFV5" FT /protein_id="CAD05848.1" FT /translation="MVAELTALRDQIDDVDKALLNLLAKRLELVAKVGEVKSRFGLPIY FT VPEREASMLASRRAEAEAIGVPPDLIEDVLRRVMRESYSSENDKGFKTLCPSLRPVVIV FT GGGGQMGRLFEKMLTLSGYQVRILEQQDWPRARDIVADAGMVIVSVPIHVTEQVIAQLP FT PLPSDCILVDLASVKSGPLQAMLAAHDGPVLGLHPMFGPDSGSLAKQVVVWCDGRQPEA FT YQWFLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAEENVQLEQLLALS FT SPIYRLELAMVGRLFAQDPQLYADIIMSSERNLALIKRYYKRFGDAIGLLEQGDKQAFI FT DSFRKVEHWFGDYARRFQNESRVLLRQANDSRP" FT misc_feature complement(24296..25036) FT /note="Pfam match to entry PF02153 PDH, Prephenate FT dehydrogenase, score 66.90, E-value 4.2e-16" FT misc_feature complement(25085..25342) FT /note="Pfam match to entry PF01817 Chorismate_mut, FT Chorismate mutase, score 113.20, E-value 4.8e-30" FT RBS complement(25350..25354) FT /note="possible RBS" FT CDS complement(25355..26425) FT /transl_table=11 FT /gene="STY2857" FT /gene_synonym="aroF" FT /product="phospho-2-dehydro-3-deoxyheptonate aldolase, FT tyr-sensitive" FT /EC_number="4.1.2.15" FT /note="Similar to Salmonella typhimurium FT phospho-2-dehydro-3-deoxyheptonate aldolase, tyr-sensitive FT aroF SW:AROF_SALTY (P21307) (356 aa) fasta scores: E(): 0, FT 99.7% id in 356 aa" FT /note="Fasta hit to AROH_ECOLI (348 aa), 48% identity in FT 342 aa overlap" FT /note="Fasta hit to AROG_ECOLI (350 aa), 54% identity in FT 337 aa overlap" FT /note="Orthologue of E. coli aroF (AROF_ECOLI); Fasta hit FT to AROF_ECOLI (356 aa), 96% identity in 356 aa overlap" FT /db_xref="GOA:P0A1B6" FT /db_xref="InterPro:IPR006218" FT /db_xref="InterPro:IPR006219" FT /db_xref="InterPro:IPR013785" FT /db_xref="UniProtKB/Swiss-Prot:P0A1B6" FT /protein_id="CAD05849.1" FT /translation="MQKDALNNVRITDEQVLMTPEQLKAAFPLSLAQEAQIAQSRGIIS FT DIIAGRDPRLLVVCGPCSIHDPETALEYARRFKALAAEVSDSLYLVMRVYFEKPRTTVG FT WKGLINDPHMDGSFDVEAGLKIARQLLVELVNMGLPLATEALDPNSPQYLGDLFSWSAI FT GARTTESQTHREMASGLSMPVGFKNGTDGSLATAINAMRAAAQPHRFVGINQAGQVALL FT QTQGNPHGHVILRGGKAPNYSPADVAQCEKEMEQAGLRPSLMVDCSHGNSNKDYRRQPA FT VAESVVAQIKDGNRSIIGLMIESNIHEGNQSSEQPRSEMKYGVSVTDACISWEMTDALL FT REIHKDLSGQLAVRVA" FT misc_feature complement(25382..26413) FT /note="Pfam match to entry PF00793 DAHP_synth_1, DAHP FT synthetase family, score 845.00, E-value 2.5e-250" FT CDS 26865..27383 FT /transl_table=11 FT /gene="STY2858" FT /product="putative exported protein" FT /note="Orthologue of E. coli YFIR_ECOLI; Fasta hit to FT YFIR_ECOLI (172 aa), 66% identity in 169 aa overlap. FT Contains a probable N-terminal signal sequence" FT /db_xref="UniProtKB/TrEMBL:Q8Z4I7" FT /protein_id="CAD05850.1" FT /translation="MRFSHRFILLLSLLLASLPLYAQCVTEEEKSVRAIVSGIVSYTHW FT PALSGPPRLCIFSSARFVRVLSEEANWAFPYQPLVIRTTQEALSARCDGFYFGNESPAY FT QVELTRHYPVNALLLIAEQNTECIIGSAFCLIINNDEVKFSVNLDSLSHSGVRVNPEVL FT MLARNQKHE" FT CDS 27376..28596 FT /transl_table=11 FT /gene="STY2859" FT /gene_synonym="yfiN" FT /product="putative membrane protein" FT /note="Orthologue of E. coli yfiN (YFIN_ECOLI); Fasta hit FT to YFIN_ECOLI (408 aa), 75% identity in 404 aa overlap. FT Contains hydrophobic, probable membrane-spanning regions" FT /db_xref="GOA:Q8Z4I6" FT /db_xref="InterPro:IPR000160" FT /db_xref="InterPro:IPR003660" FT /db_xref="UniProtKB/TrEMBL:Q8Z4I6" FT /protein_id="CAD05851.1" FT /translation="MNKEFSLSRPTFKRTLRRISIISVLLTMTLIWLLICVASVLTLKQ FT YAQKNLDLTAATMAHSLEAALVFSDSAAAAETLATLGRQGQFSAAEVRDKNGRTIASWR FT YDARAADDKLIGLISHWLFPLPVSQPVWHNGRAIGEVRLVARDSLIGHFIWLSLAVLTG FT CILLASGIALLLTRYLHNGVVDALQNITEIVHDVRTNRNFSRRVPDERIAEFHLFAQDF FT NSLLDEMEEWQLRLQAKNAQLLRTALHDPLTGLANRAAFRSCINALMKDNSARSSSALL FT FLDGDNFKYINDTWGHAAGDRVLIEVAKRLAEFGGSRYQTYRLGGDEFAMVLYGVHSEY FT EVQRICAALSQAFNRPFELHNGQRITMTLSIGFALTWEHATAEKLQELADRNMYQAKHR FT RAERSLN" FT misc_feature 27835..27867 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site" FT misc_feature 27856..28068 FT /note="Pfam match to entry PF00672 DUF5, HAMP domain, score FT 23.40, E-value 0.0052" FT misc_feature 28093..28584 FT /note="Pfam match to entry PF00990 DUF9, Domain of unknown FT function DUF9, score 184.20, E-value 2.1e-51" FT CDS complement(28753..29100) FT /transl_table=11 FT /gene="STY2860" FT /gene_synonym="rplS" FT /product="50S ribosomal subunit protein L19" FT /note="Identical to Salmonella typhimurium LT2 50S FT ribosomal protein l19 rplS SW:RL19_SALTY (P36240) (114 aa) FT fasta scores: E(): 0, 100.0% id in 114 aa" FT /note="Orthologue of E. coli rplS (RL19_ECOLI); Fasta hit FT to RL19_ECOLI (114 aa), 97% identity in 114 aa overlap" FT /db_xref="GOA:P0A2A2" FT /db_xref="InterPro:IPR001857" FT /db_xref="InterPro:IPR018257" FT /db_xref="UniProtKB/Swiss-Prot:P0A2A2" FT /protein_id="CAD05852.1" FT /translation="MSNIIKQLEQEQMKQNVPSFRPGDTVEVKVWVVEGTKKRLQAFEG FT VVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSIAVKRRGAVRKAKLYYLRERT FT GKAARIKERLN" FT misc_feature complement(28759..29097) FT /note="Pfam match to entry PF01245 Ribosomal_L19, Ribosomal FT protein L19, score 269.10, E-value 5.6e-77" FT misc_feature complement(28798..28845) FT /note="PS01015 Ribosomal protein L19 signature" FT CDS complement(29141..29908) FT /transl_table=11 FT /gene="STY2861" FT /gene_synonym="trmD" FT /product="tRNA(guanine-N1)methyltransferase" FT /EC_number="2.1.1.31" FT /note="Similar to Salmonella typhimurium LT2 tRNA FT (guanine-N1)methyltransferase trmD SW:TRMD_SALTY (P36245) FT (255 aa) fasta scores: E(): 0, 99.2% id in 255 aa" FT /note="Orthologue of E. coli trmD (TRMD_ECOLI); Fasta hit FT to TRMD_ECOLI (255 aa), 96% identity in 255 aa overlap" FT /db_xref="GOA:Q8Z4I5" FT /db_xref="InterPro:IPR002649" FT /db_xref="InterPro:IPR016009" FT /db_xref="UniProtKB/Swiss-Prot:Q8Z4I5" FT /protein_id="CAD05853.1" FT /translation="MFIGIVSLFPEMFRAITDYGVTGRAVKKGLLNIQSWSPRDFAHDR FT HRTVDDRPYGGGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSELAT FT NQKLILVCGRYEGVDERVIQAEIDEEWSIGDYVLSGGELPAMTLIDSVARFIPGVLGHE FT ASAIEDSFADGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWLRRPE FT LLENLALTEEQARLLAEFKTEHAQQQHKHDGMA" FT misc_feature complement(29216..29845) FT /note="Pfam match to entry PF01746 tRNA_m1G_MT, tRNA FT (Guanine-1)-methyltransferase, score 498.50, E-value FT 5e-146" FT CDS complement(29953..30501) FT /transl_table=11 FT /gene="STY2862" FT /gene_synonym="yfjA" FT /gene_synonym="rimM" FT /product="16S rRNA processing protein" FT /note="Similar to Salmonella typhimurium LT2 16S rRNA FT processing protein RimM rimM SW:RIMM_SALTY (P36246) (183 FT aa) fasta scores: E(): 0, 99.5% id in 183 aa" FT /note="Orthologue of E. coli yfjA (RIMM_ECOLI); Fasta hit FT to RIMM_ECOLI (182 aa), 94% identity in 182 aa overlap" FT /db_xref="GOA:P0A2B6" FT /db_xref="InterPro:IPR002676" FT /db_xref="InterPro:IPR007903" FT /db_xref="InterPro:IPR011033" FT /db_xref="InterPro:IPR011961" FT /db_xref="UniProtKB/Swiss-Prot:P0A2B6" FT /protein_id="CAD05854.1" FT /translation="MSKQLAAQVPAEPVVLGKMGSSYGIRGWLRVFSSTEDAESIFDYQ FT PWFIQKAGQWQQVQLESWKHHNQDLIIKLKGVDDRDAANLLTNCEIVVDSSQLPALEEG FT DYYWKDLMGCQVVTAEGYDLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVPFLDGQV FT IKKVDLATRTIEVDWDPGF" FT misc_feature complement(29956..30459) FT /note="Pfam match to entry PF01782 RimM, RimM, score FT 327.90, E-value 1.2e-94" FT CDS complement(30520..30768) FT /transl_table=11 FT /gene="STY2863" FT /gene_synonym="rpsP" FT /product="30S ribosomal subunit protein S16" FT /note="Orthologue of E. coli rpsP (RS16_ECOLI); Fasta hit FT to RS16_ECOLI (82 aa), 98% identity in 82 aa overlap" FT /db_xref="GOA:P0A2B0" FT /db_xref="InterPro:IPR000307" FT /db_xref="InterPro:IPR020592" FT /db_xref="UniProtKB/Swiss-Prot:P0A2B0" FT /protein_id="CAD05855.1" FT /translation="MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASE FT KEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA" FT misc_feature complement(30565..30747) FT /note="Pfam match to entry PF00886 Ribosomal_S16, Ribosomal FT protein S16, score 127.70, E-value 2.1e-34" FT misc_feature complement(30736..30765) FT /note="PS00732 Ribosomal protein S16 signature" FT RBS complement(30774..30777) FT /note="possible RBS" FT CDS complement(31112..32473) FT /transl_table=11 FT /gene="STY2864" FT /gene_synonym="ffh" FT /product="signal recognition particle protein" FT /note="Orthologue of E. coli ffh (SR54_ECOLI); Fasta hit to FT SR54_ECOLI (453 aa), 98% identity in 453 aa overlap" FT /db_xref="GOA:Q8XF48" FT /db_xref="HSSP:1HQ1" FT /db_xref="InterPro:IPR000897" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR004125" FT /db_xref="InterPro:IPR004780" FT /db_xref="InterPro:IPR013822" FT /db_xref="UniProtKB/TrEMBL:Q8XF48" FT /protein_id="CAD05856.1" FT /translation="MFDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVAL FT PVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRSELVAAMGEENQTLNLAAQPPAVVL FT MAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSD FT VGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIKPVETLFVVD FT AMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTDA FT LEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLATKLKKGDGFDLNDFLEQLKQ FT MKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTLKERAKPEIIKGSRK FT RRIAQGCGMQVQDVNRLLKQFDDMQRMMKKMKKGGMAKMMRSMKGMMPPGFPGR" FT misc_feature complement(31589..32395) FT /note="Pfam match to entry PF00448 SRP54, SRP54-type FT protein, score 511.70, E-value 5.3e-150" FT misc_feature complement(31628..31669) FT /note="PS00300 SRP54-type proteins GTP-binding domain FT signature" FT misc_feature complement(32132..32155) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)" FT CDS 32639..33430 FT /transl_table=11 FT /gene="corE" FT /gene_synonym="STY2865" FT /product="putative membrane protein" FT /note="Similar to Salmonella typhimurium CorE corE FT TR:Q9X619 (EMBL:AF130857) (288 aa) fasta scores: E(): 0, FT 98.5% id in 263 aa. Shares a region of similarity with e.g. FT Chlamydomonas reinhardtii cytochrome C biogenesis protein FT CcsA ccsA SW:CCSA_CHLRE (P48269) (353 aa) fasta scores: FT E(): 2.4e-05, 24.2% id in 207 aa. Contains hydrophobic, FT probable membrane-spanning regions" FT /note="Orthologue of E. coli P76599; Fasta hit to P76599 FT (288 aa), 94% identity in 263 aa overlap" FT /db_xref="GOA:Q8XFG6" FT /db_xref="InterPro:IPR002541" FT /db_xref="UniProtKB/TrEMBL:Q8XFG6" FT /protein_id="CAD05857.1" FT /translation="MPVFALLALVAYSFSLALIVPGLLQKNSGWRRMAILSAVIALVCH FT AVALESRILPGGDSGQNLSLLNVGSLVSLMICTVMTIVASRNRGWLLLPIVYAFALINL FT AFATFMPNEYITHLEATPGMMVHIGLSLFSYATLIIAALYALQLAWIDYQLKNKKLAFS FT NEMPPLMSIERKMFHITQIGVVLLTLTLCTGLFYMHNLFSTENIDKAVLSIVAWFVYIV FT LLWGHYHEGWRGRRVVWFNVAGAGILTLAYFGSRILQQFVS" FT misc_feature 33495..34019 FT /note="Pfam match to entry PF01595 DUF21, Domain of unknown FT function DUF21, score 253.00, E-value 4.2e-72" FT CDS 33495..34736 FT /transl_table=11 FT /gene="corB" FT /gene_synonym="STY2866" FT /gene_synonym="yfjD" FT /product="putative membrane protein" FT /note="The C-terminal half is similar to Salmonella FT typhimurium magnesium transport protein CorB corB TR:Q9X621 FT (EMBL:AF130857) (227 aa) fasta scores: E(): 0, 98.7% id in FT 227 aa, while the N-terminus is similar to the adjacent (in FT S. typhimurium) Salmonella typhimurium CorF corF TR:Q9X620 FT (EMBL:AF130857) (196 aa) fasta scores: E(): 0, 97.8% id in FT 184 aa. The N-terminal half contains hydrophobic, probable FT membrane-spanning regions. Knockouts of corB have an effect FT on Co2+ uptake and Mg2+ efflux, although its precise role FT is unknown" FT /note="Orthologue of E. coli yfjD (YFJD_ECOLI); Fasta hit FT to YFJD_ECOLI (428 aa), 96% identity in 413 aa overlap" FT /db_xref="InterPro:IPR000644" FT /db_xref="InterPro:IPR002550" FT /db_xref="InterPro:IPR005170" FT /db_xref="UniProtKB/TrEMBL:Q8XFY3" FT /protein_id="CAD05858.1" FT /translation="MVVISAYFSGSETGMMTLNRYRLRHMAKQGNRSAKRVEKLLRKPD FT RLISLVLIGNNLVNILASALGTIVGMRLYGDAGVAIATGVLTFVVLVFAEVLPKTIAAL FT YPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGSLSKEELRTIV FT HESRSQISRRNQDMLLSVLDLEKVSVDDIMVPRNEIIGIDINDDWKSIERQLTHSPHGR FT IVLYRDSLDDAISMLRVREAWRLMAEKKEFTKEMMLRAADEIYYVPEGTPLSTQLIKFQ FT RNKKKVGLVVNEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTA FT NVREINKAFNWHLPEDDARTVNGVILEALEEIPVAGTRVRIEQYDIDILDVQENMIKQV FT KVVPVKPLRESVAE" FT misc_feature 34071..34235 FT /note="Pfam match to entry PF00571 CBS, CBS domain, score FT 5.30, E-value 10" FT misc_feature 34266..34427 FT /note="Pfam match to entry PF00571 CBS, CBS domain, score FT 23.80, E-value 0.0039" FT RBS 34842..34846 FT /note="possible RBS" FT CDS 34857..35414 FT /transl_table=11 FT /gene="STY2867" FT /product="hypothetical protein" FT /note="Unknown function" FT /db_xref="UniProtKB/TrEMBL:Q8Z4I4" FT /protein_id="CAD05859.1" FT /translation="MSEDYVIEWDKNFADDLNVVANVFLSHNPTLWPTIFSQLSTQPEI FT FEDEDEDEYGLQDVLDCSGGDLGNNELAQAFLQVLRGEGFIHLVDWKGEDEEGELANFA FT ADRFYELTKNLTDSEELRNLLVEITQEDEISDVCEAGDRYLDEIFERIQTELNKRGFQI FT FDLNEGSDIYNVVVLPMSEYKK" FT CDS complement(35496..36086) FT /transl_table=11 FT /gene="STY2868" FT /gene_synonym="grpE" FT /product="heat shock protein GrpE (heat shock protein FT b25.3) (hsp24)" FT /note="Orthologue of E. coli grpE (GRPE_ECOLI); Fasta hit FT to GRPE_ECOLI (197 aa), 92% identity in 196 aa overlap" FT /db_xref="GOA:Q8XEY8" FT /db_xref="InterPro:IPR000740" FT /db_xref="InterPro:IPR009012" FT /db_xref="InterPro:IPR013805" FT /db_xref="UniProtKB/Swiss-Prot:Q8XEY8" FT /protein_id="CAD05860.1" FT /translation="MSSKEQKTPEGQAPEEIIMDQHEEVEAVEPNDSAEQVDPRDEKIA FT NLEVQLAEAQTRERDTVLRIKAEMENLRRRTEQDIEKAHKFALEKFVNELLPVIDSLDR FT ALEVADKANPDMAAMVEGIELTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMVESE FT EVPAGNVLGIMQKGYTLNGRTIRAAMVTVAKAK" FT misc_feature complement(35505..36026) FT /note="Pfam match to entry PF01025 GrpE, GrpE, score FT 255.60, E-value 6.5e-73" FT misc_feature complement(35511..35642) FT /note="PS01071 grpE protein signature" FT RBS complement(36093..36096) FT /note="possible RBS" FT RBS 36194..36198 FT /note="possible RBS" FT CDS 36209..37087 FT /transl_table=11 FT /gene="STY2869" FT /gene_synonym="yfjB" FT /product="conserved hypothetical protein" FT /note="Orthologue of E. coli yfjB (YFJB_ECOLI); Fasta hit FT to YFJB_ECOLI (292 aa), 96% identity in 292 aa overlap" FT /db_xref="GOA:P65775" FT /db_xref="InterPro:IPR002504" FT /db_xref="InterPro:IPR016064" FT /db_xref="InterPro:IPR017437" FT /db_xref="UniProtKB/Swiss-Prot:P65775" FT /protein_id="CAD05861.1" FT /translation="MNNHFKCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAH FT ELQLKNVPTGTLAEIGQQADLAVVVGGDGNMLGAARTLARYDINVIGINRGNLGFLTDL FT DPDNALQQLSDVLEGRYISEKRFLLEAQVCQQDRQKRISTAINEVVLHPGKVAHMIEFE FT VYIDETFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSARPLV FT INSSSTIRLRFSHRRSDLEISCDSQIALPIQEGEDVLIRRCDYHLNLIHPKDYSYFNTL FT STKLGWSKKLF" FT misc_feature 36272..37048 FT /note="Pfam match to entry PF01513 DUF15, Domain of unknown FT function DUF15, score 422.20, E-value 4.8e-123" FT CDS 37173..38834 FT /transl_table=11 FT /gene="STY2870" FT /gene_synonym="recN" FT /product="DNA repair protein" FT /note="Similar to Escherichia coli DNA repair protein recn FT SW:RECN_ECOLI (P05824) (553 aa) fasta scores: E(): 0, 91.1% FT id in 553 aa" FT /note="Orthologue of E. coli recN (RECN_ECOLI); Fasta hit FT to RECN_ECOLI (553 aa), 91% identity in 553 aa overlap" FT /db_xref="GOA:Q8Z4I3" FT /db_xref="InterPro:IPR003395" FT /db_xref="InterPro:IPR004604" FT /db_xref="UniProtKB/TrEMBL:Q8Z4I3" FT /protein_id="CAD05862.1" FT /translation="MLAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGLC FT LGGRAEADMVRTGATRADLCARFALKDTPAALRWLEENQLEEGRECLLRRVISSDGRSR FT GFINGTAVPLSQLRELGQLLIQIHGQHTHQQLTKPEQQKSLLDSYANEAALAQQMAAHY FT QLWHQSCRDLAHHQQQSQERAARAELLQYQLKELNDFNPQAGEFEQIDEEYKRLANSGQ FT LLTTSQNALALLADGEDVNLQSQLYSAKQLVSELVGMDSKLSGILDMLEEATIQLTEAS FT DELRHYCERLDLDPNRLFELEQRIAKQISLARKHHVSPEALPQLYQSLLEEQQQLDDQA FT DSLETLTLAVNKHHQQALETAQALHQQRQFYAQELGQLITESMHLLSMPHGLFTIDVKF FT DEHHLSNDGADRVEFKVTTNPGQPLQPIAKVASGGELSRIALAIQVITARKMETPALIF FT DEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKETDGAMTETH FT MQPLDKRARLQELARLLGGSEVTRNTLANAKELLAA" FT misc_feature 37257..37280 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)" FT RBS 38967..38971 FT /note="possible RBS" FT CDS 38983..39321 FT /transl_table=11 FT /gene="STY2871" FT /gene_synonym="smpA" FT /product="small protein A" FT /note="Orthologue of E. coli smpA (SMPA_ECOLI); Fasta hit FT to SMPA_ECOLI (113 aa), 93% identity in 111 aa overlap. FT Contains a probable N-terminal signal sequence" FT /db_xref="GOA:Q8XF17" FT /db_xref="InterPro:IPR007450" FT /db_xref="UniProtKB/TrEMBL:Q8XF17" FT /protein_id="CAD05863.1" FT /translation="MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTPTDVAK FT VRVGMTQQQVAYALGTPMMTDPFGTNTWFYVFRQQPGHENVTQQTLTLTFNSSGVLTNI FT DNKPALTK" FT misc_feature 39010..39042 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site" FT CDS complement(39487..39762) FT /transl_table=11 FT /gene="STY2872" FT /product="conserved hypothetical protein" FT /note="Similar to Rhodobacter capsulatus protein RnfH rnfH FT TR:P97056 (EMBL:Y11913) (85 aa) fasta scores: E(): 1.2e-07, FT 39.8% id in 83 aa" FT /note="Orthologue of E. coli YFJF_ECOLI; Fasta hit to FT YFJF_ECOLI (96 aa), 90% identity in 90 aa overlap" FT /db_xref="InterPro:IPR005346" FT /db_xref="UniProtKB/Swiss-Prot:P0A2L8" FT /protein_id="CAD05864.1" FT /translation="MVEVAYALPEKQYLQRVTLEEGATVEEAIRASGLLELRTDIDLAK FT NKVGIYSRPVKLTDTVQDGDRVEIYRPLIADPKALRRQRAEKSAGR" FT CDS complement(39767..40243) FT /transl_table=11 FT /gene="STY2873" FT /product="conserved hypothetical protein" FT /note="Orthologue of E. coli YFJG_ECOLI; Fasta hit to FT YFJG_ECOLI (158 aa), 89% identity in 157 aa overlap" FT /db_xref="InterPro:IPR005031" FT /db_xref="UniProtKB/TrEMBL:Q8XFB4" FT /protein_id="CAD05865.1" FT /translation="MVLFTRFMLMGIAMPQISRTALVPYSAEQMYQLVNDVQSYPQFLP FT GCVGSRVLESSPAQMTAAVDVSKAGISKTFTTRNQLTRNQSILMHLVDGPFKKLIGGWK FT FTPLSPEACRIEFQLDFEFTNKLIELAFGRIFKELASNMVQAFTVRAKEVYRAG" FT CDS 40393..40875 FT /transl_table=11 FT /gene="STY2874" FT /gene_synonym="smpB" FT /product="SsrA (tmRNA)-binding protein" FT /note="Orthologue of E. coli smpB (SMPB_ECOLI); Fasta hit FT to SMPB_ECOLI (159 aa), 94% identity in 159 aa overlap" FT /db_xref="GOA:P0A2G2" FT /db_xref="InterPro:IPR000037" FT /db_xref="InterPro:IPR020081" FT /db_xref="UniProtKB/Swiss-Prot:P0A2G2" FT /protein_id="CAD05866.1" FT /translation="MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLR FT AGKANIGDSYVILKDGEAWLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRI FT NREGYTVVALSLYWKNAWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIMKNAGR" FT misc_feature 40426..40632 FT /note="Pfam match to entry PF01668 SmpB, SmpB protein, FT score 150.30, E-value 3.5e-41" FT misc_feature 40486..40524 FT /note="PS01317 Protein smpB signature" FT misc_feature 40876..57156 FT /note="Salmonella pathogencity island 9. This region FT carries CDS which share a significant level of sequence FT identity with those carried on SPI-4 4321942..4346613" FT CDS 41495..52369 FT /transl_table=11 FT /gene="STY2875" FT /product="large repetitive protein" FT /note="Similar to several including: Salmonella typhi FT proline/threonine-rich protein TR:Q9X6M3 (EMBL:AF139831) FT (1605 aa) fasta scores: E(): 0, 99.8% id in 1569 aa, FT Pseudomonas aeruginosa hypothetical protein PA1874 FT TR:AAG05263 (EMBL:AE004613) (2468 aa) fasta scores: E(): 0, FT 32.7% id in 2745 aa and Aeromonas salmonicida RTX protein FT AsX TR:Q9L800 (EMBL:AF218037) (2747 aa) fasta scores: E(): FT 2.3e-22, 25.3% id in 2251 aa. This CDS is also similar to FT S. typhi proteins STY4459 and STY4458, carried on SPI-4. FT Note that the product of this CDS is composed of multiple FT degenerate repeats." FT /db_xref="InterPro:IPR010221" FT /db_xref="InterPro:IPR019960" FT /db_xref="UniProtKB/TrEMBL:Q8Z4I1" FT /protein_id="CAD05867.1" FT /translation="MRLLAVVSKLTGVSTTVESSAVTLNAPSIVKLSVARDEISQLTRI FT NQDLVVRLHSGETITIKNFYVTNDLGASQLVLAENDGTLWWVENPQAGLHFEQIADINE FT LLVTSGASHEAGGAVWPWVLAGAVAAGGIAAIASSGGGDSHHHSDGDNPPPDNTNPDGN FT PPDNSNPGGSNPNGNTPGSSNPVDTTPPLAPGELLISADGKTVSGEAEAGSLITIKDPS FT GNVVGEGKADSDGKFSIDLTAPQISGEQLTVTATDDAGNTGPSATIDAPNIPLPDTPVI FT TAAIDDAAPLTGTLSNNQFTNDNTPTLEGTGSAGTVIHIYANGQEIGSTTVDTSGNWHF FT AITSALADGENHFTAIATNVKGESSESARFTLTIDTLSPDAPRVELMADNTGLLTGPLQ FT NNDRTDEAKPLFSGQGEAGNTITIKEGSTVIGSATVDENGRWTFTPTTPLSDGEHTFTV FT EQSDKAGNASRVTTTPTIIVDTTPPDAAIIDNVAKDGTTVSGTAEAGSTVSIYDPAGNY FT LGSTITGENNHFSITLNPAQTHGERLEARIQDAVGNIGPATEFTASDSQYPAQPTILTV FT TDDAGAVTGLLKNGDATDDNRPTLSGTAEPGSTISINDNGFPVPSFPPIVADADGKWSF FT TPSLALADGDHVFTATATNDRGTSGQSVAFTIDIDTQPPVLEGLAVSDVGDRLTGTTEA FT GSTVVIKDSLGNTLGSGTAGDDGTFSIGISPAKINGETLSISVTDKAANSGPVETLNAP FT DKTAPAAPNGLIVATDGLSVSGQAEAGATVTIRDSSNTVLGSAVANGNGQFIVPLNAAQ FT TNGQALIATATDIANNESAAATVDAPDSTAPEMPKNVVISEDGASISGTAEPGSSITIT FT TPDGTPLGSGKADGEGHFTLPLAPAQTNGEQVTVTATDSANNVSPPTTAQAPDITAPDK FT PIITQVLDDVESFTGPLVNGQTTNDNRPTLSGTAEAGARVEIFDNGVSLGLATLQPNGG FT WTFTPSQNLGEGAHRLTVIATDAKGNASPAGNESPESISFTLRIDTQAPDAPQIVSAAI FT TGGEGEVLLANGSITNQRMPTLSGTGEPGAIITLYNNGVELATVQVNPQGSWTYPLTRN FT LSEGLNILTATATDAAGNSSPTSGVFSVTLDTQPPAQPDAPLISDNVAPVIGNIGNNGA FT TNDTTPTFSGTGEIGSTIILYNNGSEIGRTTVGDNGSWNFTPAALTPETYTITVTETDI FT AGNISPPSASVTFTLDTTAPANPVITFAEDNVGEVQDTIVSGATTDDNTPVIHGTGDIG FT SVITLYNGSSVVGVVTVDETGTWTLPVTSALPDGVYTLTAIAADAAGNSSGVSNSFTFT FT VDTVPLQPPVVNEILDDVAPVTGPLTDGAFTNDRTLTINGSGENGSTVTIYDNGVAIGT FT ALVTDGVWTFNTSELSEASHALTFSATDDAGNTTAQTQPITITVDITAPPAPTIQTVAD FT DGTRVAGLADPYATVEIHHADGTLVGSAVANGTGEFVVTLSPAQTDGGTLTAIAIDRAG FT NNGPATNFPASDSGLPAVPAITAIEDDVGSIQGNIAAGGATDDTMPTLRGTTDIGSTVE FT VFIDGDSAGFATVDASGNWIFEIATPLSESTHYFTVQATNANGPGGLSAPVGITVDLSA FT PAQPVITSATDDVPGMTGTLDNGALTNDSRPTLNGTGEAGATIRILDNGVEIGSATVDQ FT SGNWRFTPNTPLESNAHIFTAVATDPAGNSGQLSDGFTLNIDAQAPDVPVITSVIDDNN FT QPTVPVLPGQSTDDRQPILNGTGEPGATITIFDNGTPLGTAQVGENGSWTFPVPRNLSE FT GSHNLTVSATDPAGNTSAVSAPWTIVVDITPPAIPVLTSVVDDQPGITGNLVSGQLTND FT ATPTLNGRGEAGATINVYLDGNPASIGTTTVNSDGTWSFTPQTPLANGSHTFTLSATDP FT AGNSSAVSSGFVLTIDTTPPAAPVIASVADNTAPVTGIVPNGGSTNETRPTLSGTGEAG FT TTISIYNGSALVGTAQVQANGSWSFTPSTSLGAGVWNLTATATDAAGNTSAASEIRSFT FT IDTTAPAAPVIDTVYDGTGPITGNLSSGQITDEARPVISGTREANTTIRLYDNGTLLAE FT IPADNSSSWRYTPDASLATGNHVITVIAVDAAGNASPVSDSVNFVVDTTPPLTPVITSV FT SDDQAPGLGTIANGQNTNDPTPTFSGTAEAGATITLYENGTVIGTTTAQPDGAWSVSTS FT TLASGTHVITAVATDAAGNSSPNSTAFTLTVDTTAPQTPILTSVVDDVAGGVTGNLANG FT QITNDNRPTLNGTAEAGSVVSIYDGDTLLGVTSANASGAWSFTPTTGLNDGTRTLTVTA FT TDPAGNVSPATSGFTIVVDTLAPTVPLITSIVDDVPNNTGAIGNGQSTNDTQPTLNGTA FT EANSAVSIFDNGALVATVNANASGNWSWTPTASLGQGSHAYSVSAADAAGNVSAASPST FT TIIVDTIAPGAPGNLVINATGNRVTGTAEAGSTVTITSETGVVLGTATADGTGSFTATL FT TPAQTNGQPLLAFAQDKAGNTGIAAGFTAPDTRVPEAPIITNVVDDVGIYTGAIANGQV FT TNDAQPTLNGTAQAGATVSIYNNGALLGTTTANASGNWSFTPTGNLTEGSHAFTATATN FT ANGTGSVSTAATVIVDTLAPGTPSGTLSADGGSLSGQAEANSTVTVTLAGGVTLTTTAG FT SNGAWSLTLPTKQIEGQLINVTATDAAGNASGTLGITAPILPLAARDNITSLDLTSTAV FT TSTQNYSDYGLLLVGALGNVASVLGNDTAQVEFTIAEGGTGDVTIDAAATGIVLSLLST FT QEIVVQRYDTSLGTWTTIVNTAVGDFANLLTLTGSGVTLNLNGLGEGQYRVLTYNTSLL FT ATGSYTSLDVDVHQTSAGIISGPTISTGNVMADDTAPTGTTVTAITNANGVSTPVGAGG FT VDILGQYGTLHINQDGSYTYTLTKPTAGYGHKESFTYTITQNGVGSSAAQLVINLGPAP FT VPGSVIATDNNASLVFDTHVSYVNNGPSTQSGVTVLSVGLGNVLNANLLDDMTNPIIFN FT VEEGATRTMTLQGTVGGVSLVSTFDLYVYRFNDAIQQYEQFRVQKGWINTLLLAGQSQP FT LTLTLPGGEYLFVLNTASGISVLTGYTLAISQDHTYAVDSITANTTGNVLTNDVAPTDA FT LLTEVNGVAIAATGTTEVNGLYGSLIIDARGNYTYTLKNGVGADSIKTPDSFIYTLKAP FT NGDTDTASLNITPTARALDAINDVSDTLSVATLQDTAAWLDSSVGSASWGLLGKSGSGS FT GTFDVATGTVLKGASLVFDVSTLITLGNLNISWAIQENGTVIRNGTVPVANITLGSATV FT TVNLSGLELDAGTYTLNFTGTNTLAGAATITPRVIGTTVDLDNFETSGTHTVLGNIFDG FT SDAAGAMDQLNTVNTRLSISGYNGSAATLDAAANTTSATIQGHYGTLQINLDGAYTYTL FT NNGVAMSSITSKEVFTYQLDDKIGHTDSATLTIDMAPQIVSTNQNDVLIGSAYGDTLIY FT HLLNGADATGGNGADRWQNFSTAQGDKIDIHELLTGWDHQAATLGNFVQVHTSGANTVI FT SVDRDGAGSAFKSTDLVTLENVQLTLNDLLQNNHLITGG" FT CDS 52433..53842 FT /transl_table=11 FT /gene="STY2876" FT /product="putative type I secretion protein" FT /note="Similar to several including Bordetella pertussis FT CyaE protein precursor required for the transport of FT cyclolysin SW:CYAE_BORPE (P11092) (474 aa) fasta scores: FT E(): 3e-11, 26.3% id in 482 aa. Also similar to Vibrio FT cholerae outer membrane protein TolC precursor FT SW:TOLC_VIBCH (Q9K2Y1) (438 aa) fasta scores: E(): 1.9e-09, FT 22.7% id in 444 aa" FT /db_xref="GOA:Q8Z4I0" FT /db_xref="InterPro:IPR003423" FT /db_xref="InterPro:IPR010130" FT /db_xref="UniProtKB/TrEMBL:Q8Z4I0" FT /protein_id="CAD05868.1" FT /translation="MGRVAPVAIVLAFALFHHQPRGAEALPMITSEGLATDQMLPSLDG FT SAAELPLSAAAPGNLTLNDAVNRAVNWHPSIREAVGKLLAQNEQIEVAKSKYYPQVSAG FT VNNGYSNTYTDHGYSPSLVLSVSQMLYDFGKVASQVRAETAGAAQQQANVLLSIDTVAH FT ETANAIVQTQSWQQMVEAAEEQLVALDSIGKLIRQRSDEGATSLSDVVQTEARIESARS FT QLAQYQANLDSAKASLMSWLGWNSLNGINNDFPAKLARSCETATPEDRLVPAVLAAWAQ FT ANVARANLDYASAQMTPTISLEPSVQHYLNDKYPSHEVLDKTQYSTWVKVEMPLYQGGG FT LTARRNAASHAVDAAQSTIQRTRLDVRQKLMEARSQAMSLASALQILRRQQQLSERTRE FT LYQQQYLDLGSRPLLDVLNAEQEVYQARFAELQTESQLHQLQLNYLYNTGALRQAFALN FT HRSIQSVEIQP" FT CDS 53839..55995 FT /transl_table=11 FT /gene="STY2877" FT /product="putative type I secretion protein, ATP-binding FT protein" FT /note="Similar to many including: Actinobacillus FT pleuropneumoniae RTX-I toxin determinant B ApxIB FT SW:RT1B_ACTPL (P26760) (707 aa) fasta scores: E(): 0, 28.2% FT id in 698 aa, Actinobacillus actinomycetemcomitans FT leukotoxin secretion ATP-binding protein LktB SW:HLYB_ACTAC FT (P23702) (707 aa) fasta scores: E(): 0, 26.7% id in 707 aa FT and Escherichia coli hemolysin secretion ATP-binding FT protein HlyB SW:HLYB_ECOLI () (707 aa) fasta scores: E(): FT 0, 27.1% id in 643 aa. Contains multiple possible membrane FT spanning hydrophobic domains." FT /db_xref="GOA:Q8Z4H9" FT /db_xref="HSSP:1MT0" FT /db_xref="InterPro:IPR001140" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR005074" FT /db_xref="InterPro:IPR011527" FT /db_xref="InterPro:IPR017750" FT /db_xref="InterPro:IPR017940" FT /db_xref="UniProtKB/TrEMBL:Q8Z4H9" FT /protein_id="CAD05869.1" FT /translation="MTRAAPDVEEVLSERALSQWAQAISHVAGHYRVACSPGSIQANAP FT WFRGKSRTTALTQLARQAGLSFHAPDIDKTAFSQWRLPLVVELRDGQLLVIEHVNGEDA FT VDVFVIEEEGQRNRLTLSELLPEILYVAALRPLSALKDSRVDRYISRFKPDWMRELVLQ FT DIRPYLPVMVAAFLINVLSLAGIVFSMQVYDRVIPAQSYPTLYVLSFGVLVAVLFGFLL FT REARTHIMDVLGKRADMRISDRVFGHALRLRNSAIPRSTGSFISQLRELEQIREMITSS FT TLATIVDLPFFFLFMIVLAIIAPPLAWIAPVAALLMILPGVALQKKLAVLANQAAHEAT FT LRNAVLVESVQGLEDIKLMQAENRFLQQWNSYIRITGESGLRTRKLTQRLISWGMSVQS FT LVYAAVIMFGAPMVIEGSMTTGAVVAASMLGSRMIAPMANLCGVLARWQQVKAAKMGLD FT NIMQLPTETQHDDSLIHRDILHGHYLFENAQFRYHNDDQRIPLRLVRLEIMPGERIAIL FT GRNGAGKSTLLQAMAGGLEMIQGDARLDNLSLSHIDMADLRRNIGFLSQNARLFFGTLR FT ENLTLGAPHANDEQIFDALEVSGGAVFVRRLAKGLDHPIMEGGNGLSGGQRQSLLLARM FT LLRSPNIVLLDEPSASLDEHTEREFIQRLHQWLGNRTLVVATHRVPILELVERVVVLKE FT GQLVMDAPKAQALNADRMQSHRRE" FT misc_feature 53968..53991 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)" FT misc_feature 54340..55149 FT /note="Pfam match to entry PF00664 ABC_membrane, ABC FT transporter transmembrane region., score 66.80, E-value FT 4.5e-16" FT misc_feature 55369..55923 FT /note="Pfam match to entry PF00005 ABC_tran, ABC FT transporter, score 168.80, E-value 9.3e-47" FT misc_feature 55390..55413 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)" FT CDS 56027..57190 FT /transl_table=11 FT /gene="STY2878" FT /product="putative type I secretion protein" FT /note="Similar to many including: Vibrio cholerae secretion FT protein, HlyD family VCA1080 TR:Q9KKM3 (EMBL:AE004433) (481 FT aa) fasta scores: E(): 2.3e-22, 35.5% id in 437 aa and to FT Escherichia coli HlyD protein TR:O08269 (EMBL:Y13891) (478 FT aa) fasta scores: E(): 2.4e-13, 25.5% id in 435 aa" FT /db_xref="GOA:Q8Z4H8" FT /db_xref="InterPro:IPR003997" FT /db_xref="InterPro:IPR006143" FT /db_xref="InterPro:IPR010129" FT /db_xref="UniProtKB/TrEMBL:Q8Z4H8" FT /protein_id="CAD05870.1" FT /translation="MDDFDIQRERAFSGAGRIVLICSLLFLILGIWAWFGRLDEVSTGN FT GKVIPSSREQVLQSLDGGILAQLTVREGDRVQANQIVAQLDPTRLASNVGESAAKYRAS FT LASSARLTAEVSDLPLAFPAELNGWPDLIAAETRLYKSRRAQLADTEAELRDALASVNK FT ELTITQRLEKSGAASHVEVLRLQRQKSDLGLKITDLRSQYYVQAREALSKANAEVDMLS FT AILKGREDSVTRLTIRSPVRGIVKNIQVTTIGGVIPPNGEMMEIVPVDDRLLIETRLSP FT RDIAFIHPGQRALVKITAYDYAIYGGLDGVVETISPDTIQDKVKPEIFYYRVFIRTHQD FT YLQNKSGRRFSIVPGMIATVDIKTGEKTIVDYLIKPFNRAKEALRER" FT misc_feature 56183..56971 FT /note="Pfam match to entry PF00529 HlyD, HlyD family FT secretion protein, score 34.40, E-value 2.6e-06" FT misc_feature 57080..57148 FT /note="PS00543 HlyD family secretion proteins signature" FT misc_RNA 57156..57622 FT /gene="10Sa_RNA" FT /note="hit to 10Sa RNA sipB 1..466 score: 1896 percent FT id: 91.22" FT CDS complement(57733..58506) FT /transl_table=11 FT /gene="STY2879" FT /product="putative reverse transcriptase" FT /note="Shows very weak similarity to Escherichia coli FT RNA-directed DNA polymerase from retron EC86 SW:RT86_ECOLI FT (P23070) (320 aa) fasta scores: E(): 0.0026, 23.8% id in FT 210 aa" FT /db_xref="GOA:Q8Z4H7" FT /db_xref="InterPro:IPR000477" FT /db_xref="UniProtKB/TrEMBL:Q8Z4H7" FT /protein_id="CAD05871.1" FT /translation="MTIEVQRWEDKFEIKPGVWVYVPSVEARKVGGKILQAVRNKWIPP FT LYFYHLRTGGHLKAARLHLKSDFFAVVDIKQFFQSTSRSRITRDLKSYFTYSQAREIST FT FSTVRNLSHSPHKHVLPFGFVQSPILATLCLDKSYFGSLLRRLNKHHDLKLSVCMDDVI FT ISSNNLAQLQAAYDEALVAMRKSGYQANMSKTQAPSSKISVFNLTLSKGVMKVTSQKMS FT DFLIDFYSSNYEPHRIGVKNYVEAVNPGQAKLFKL" FT misc_feature 57733..80364 FT /note="lysogenic bacteriophage" FT misc_feature complement(57880..58494) FT /note="Pfam match to entry PF00078 rvt, Reverse FT transcriptase (RNA-dependent DNA polymerase), score 17.40, FT E-value 3.9e-06" FT CDS complement(58475..58663) FT /transl_table=11 FT /gene="STY2880" FT /product="hypothetical protein" FT /note="Unknown hydrophobic protein" FT /db_xref="UniProtKB/TrEMBL:Q8Z4H6" FT /protein_id="CAD05872.1" FT /translation="MEEQVMDTNELGLVKARVELITAMLKCATAFVGLVGAVYAVLNMA FT FNYNNLTHDNRSSKVGR" FT CDS complement(58910..59128) FT /transl_table=11 FT /gene="STY2881" FT /product="putative bacteriophage late gene regulator" FT /note="Similar to Bacteriophage P2 late control gene FT regulator: OgR SW:VOGR_BPP2 (P08762) (72 aa) fasta scores: FT E(): 1.4e-12, 54.8% id in 62 and to Serratia marcescens FT transcriptional activator RegC TR:Q54424 (EMBL:U31763) (75 FT aa) fasta scores: E(): 1.6e-13, 58.6% id in 70 aa." FT /db_xref="GOA:Q8Z4H5" FT /db_xref="InterPro:IPR007684" FT /db_xref="UniProtKB/TrEMBL:Q8Z4H5" FT /protein_id="CAD05873.1" FT /translation="MMICPLCGSAAHTRSSFQVSSLTKERYNQCQNINCSHTFVTHETF FT VRSIATPKESNPVQPHPHKFKQVGLPI" FT RBS complement(59139..59142) FT /note="possible RBS" FT CDS complement(59219..60319) FT /transl_table=11 FT /gene="STY2882" FT /product="putative bacteriophage late gene regulator" FT /note="Similar to Bacteriophage P2 protein D SW:VPD_BPP2 FT (P10312) (387 aa) fasta scores: E(): 0, 55.7% id in 370 aa FT and to Bacteriophage 186 late control protein D FT SW:VPD_BP186 (P21679) (389 aa) fasta scores: E(): 0, 56.5% FT id in 368 aa" FT /db_xref="InterPro:IPR010277" FT /db_xref="UniProtKB/TrEMBL:Q8XG84" FT /protein_id="CAD05874.1" FT /translation="MNFSSELLNKGNKTPAFSISIEGKDITTVLDNRLMSLTLTDNRGF FT EADQLDLELDDADGKIVLPRRGAVITLALGWKGQPLFPKGAFTVDEIEHTGAPDRLTIR FT ARSADFRETLNTRREKSWHKTTVGEVVKEIAARHKLKMALGEDLSDKPVEHIDQTNESD FT GSFLMRLARQYGAIASVKNGNLLFIRQGQGKSASGKPLPVITITRKDGDSHRFTLADRG FT AYTGVIASWLHTREPAKKESTTVKRKRRTKKQKKEPEAKQGDYLVGTDENVLVLNRTYA FT NRSNAERAAKMQWERLQRGVASFSLQLAEGRADLYTEMPVKVSGFKQPIDDAEWTITTL FT THTVSPDNGFTTSLELEVRIDDFEME" FT CDS complement(60316..60801) FT /transl_table=11 FT /gene="STY2883" FT /product="putative bacteriophage tail protein" FT /note="Similar to e.g. Bacteriophage P2 essential tail FT protein U TR:O64315 (EMBL:AF063097) (159 aa) fasta scores: FT E(): 3e-27, 46.5% id in 157 aa and Bacteriophage 186 FT protein F TR:O80317 (EMBL:U32222) (161 aa) fasta scores: FT E(): 9.2e-29, 49.1% id in 159 aa." FT /db_xref="InterPro:IPR009734" FT /db_xref="InterPro:IPR016912" FT /db_xref="UniProtKB/TrEMBL:Q8XF01" FT /protein_id="CAD05875.1" FT /translation="MMMVLGLYVFMLRTVPYQELLYQRSWRHAANSRVNRRPSTQFLGP FT DNDMLTLSGVLMPEITGGRLSLLALEQMAEQGKAWPLIEGSGTIYGMYVIEGLNQTKTE FT FFRDGMPRRIEFTLSLKRVDESLSDMFGDLSAQLNNLQDTVTSALSDISKTVGGLLS" FT RBS complement(60329..60333) FT /note="possible RBS" FT CDS complement(60798..63875) FT /transl_table=11 FT /gene="STY2884" FT /product="putative bacteriophage tail protein" FT /note="Similar to Bacteriophage P2 essential tail protein T FT TR:O64314 (EMBL:AF063097) (815 aa) fasta scores: E(): FT 2.2e-18, 26.7% id in 883 aa and Bacteriophage 186 tail FT protein G TR:Q37848 (EMBL:U32222) (812 aa) fasta scores: FT E(): 5.2e-16, 25.9% id in 901 aa" FT /db_xref="InterPro:IPR010090" FT /db_xref="UniProtKB/TrEMBL:Q8XFL4" FT /protein_id="CAD05876.1" FT /translation="MSDNNLRLQVILNAVDKLTRPFRSAQASSRELAAAVKKSRDAIKQ FT LDQAGSSLDSFRKLQAENQKLGDRLNYARQRANLLSQELGAMGPPSQRQVVALGRQRLA FT VQRLEERQKKLQQQTALVRAELYRAGISAKDDAGATARLARETSRYNQELSKQEARLKR FT LGEAQRRMNVARASYARSLEVRDRIAGAGATTTAAGLAMGTPVMAAVKSYTSMEDAMKG FT VAKQVNGLRDDNGNRTARFYEMQDAIKAASEQLPMENGAVDFAALVEGGARMNVANPDD FT SWEDQKRDLLAFASTAAKAATAFELPADELSESLGKIAQLYKIPTRNIEQLGDALNYLD FT DNAMSKGADIIDVMQRLGGVADRLDYRKAAALGSTFLTLGAAPEVAASAANAMVRELSI FT ATMQSKSFFEGMNLLKLNPEVIEKQMTKDAMGTIQRVLEKVNALPQDKRLSAMTMLFGK FT EFGDDAAKLANNLPELQRQLKLTAGNDALGSMQKESDINKDSLSAQWLLVKTGAQNTFS FT SLGETLRQPLMDILYMVKSVTGASRRWVEANPELTGTLMKVAAVVAAVTVGLGTLAVAL FT AAVLGPLAVIRLGFSVLGIKTLPSVTAAVTRTSSALSWLAGAPLALLRRGLASSGNAAG FT LLTAPLSSLRRTASLTGNVLKTVAGAPVALLRSGLSGLRAVAVMFMNPLAALRGGLAAA FT GAVLRVLASGPLAMLRIALYAVSGLLGALLSPIGLVVTALAGVALVVWKYWQPITAFLG FT GVVEGFKAAAGPISAAFEPLKPVFQWIGDKVQALWGWFTDLLTPVKSTSAELQSAAAMG FT RRFGEALAEGLNMVMHPLDSLKSGVSWLLEKLGIVSKEAAKAKLPESVTRQQPATVNAD FT GKVMMPSGGFPSWGYGFAGMYDSGGYIPRGQFGIVGENGPEIVNGPANVTSRRNTAALA FT AVVAGMMGVAAAPAELPPLHPLAFPAKGGEAMVSRAATVSPVQRIEAPTQIIIQTQPGQ FT SVQDIAREVARQLDERERRLKAKARSNYSDQGGYDA" FT CDS complement(63868..63987) FT /transl_table=11 FT /gene="STY2885" FT /product="putative bacteriophage protein" FT /note="Similar to part of hypothetical bacteriophage FT proteins e.g. Bacteriophage 186 ORF52 H TR:O80316 FT (EMBL:U32222) (58 aa) fasta scores: E(): 1.1e-08, 59.0% id FT in 39 aa and Bacteriophage P2 GPE+E' TR:O64312 FT (EMBL:AF063097) (142 aa) fasta scores: E(): 7.5e-08, 56.4% FT id in 39 aa" FT /db_xref="InterPro:IPR009493" FT /db_xref="UniProtKB/TrEMBL:Q8XH06" FT /protein_id="CAD05877.1" FT /translation="MADIATIFHWPPSVTDVMPLTEVLEWRYKAIQRSGANDE" FT CDS complement(64002..64304) FT /transl_table=11 FT /gene="STY2886" FT /product="putative phage tail protein" FT /note="Similar to Bacteriophage P2 essential tail protein E FT TR:O64313 (EMBL:AF063097) (91 aa) fasta scores: E(): FT 5.2e-12, 43.7% id in 87 aa" FT /db_xref="InterPro:IPR009322" FT /db_xref="UniProtKB/TrEMBL:Q8XFW3" FT /protein_id="CAD05878.1" FT /translation="MSDKKTEKTIQLDTPIKRGKTEITEIVLRKPQSGALRGTRLQAIM FT DMDVNAMMTVIPRISSPALTAQEIAEMDPADLTAMSVEVVTFLLKKSVLAGLPTA" FT CDS complement(64359..64874) FT /transl_table=11 FT /gene="STY2887" FT /product="probable major tail tube protein" FT /note="Similar to Bacteriophage P2 major tail tube protein FT FII SW:VPF2_BPP2 (P22502) (171 aa) fasta scores: E(): 0, FT 52.6% id in 171 aa and Bacteriophage 186 putative tail tube FT protein FII I TR:Q37845 (EMBL:U32222) (173 aa) fasta FT scores: E(): 0, 58.1% id in 172 aa." FT /db_xref="InterPro:IPR006498" FT /db_xref="UniProtKB/TrEMBL:Q8XEQ7" FT /protein_id="CAD05879.1" FT /translation="MALPRKLKHLNLFNDGNNWQGIVESLTLPKFTRKYEKYRGGGMPG FT AVDVDLGLDDGALDTEFSIGGTELLLFKQMGKATVDGIQLRFTGSIQRDDTGEVQAVEL FT VVRGRHKEVDSGEWKTGESNTTKVTSTNSYAKLTINGEVLYEVDLINMVEIVDGVDLME FT AHRNALGL" FT CDS complement(64884..66056) FT /transl_table=11 FT /gene="STY2888" FT /product="putative bacteriophage major tail sheath protein" FT /note="Similar to e.g. Bacteriophage P2 major tail sheath FT protein FI SW:VPF1_BPP2 (P22501) (395 aa) fasta scores: FT E(): 0, 67.9% id in 393 aa and Bacteriophage 186 putative FT tail sheath protein FI J TR:Q37844 (EMBL:U32222) (392 aa) FT fasta scores: E(): 0, 69.7% id in 390 aa" FT /db_xref="InterPro:IPR007067" FT /db_xref="UniProtKB/TrEMBL:Q8XEN7" FT /protein_id="CAD05880.1" FT /translation="MAQDYHHGVRVVEVNEGTRSITTVSTAIVGMVCTGDDADAKMFPL FT NKPVLITDVLTASGKAGESGTLARSLDAIADQAKPVTVVVRVPQGETEEETTTNIIGAV FT TAEGKKTGMKALLSAQSQLGVKPRILGVPGHDTKAVATELLSVAQSLRGFAYLSAYGCK FT TVQEAITYRENFSQREGMLIWPDFTGWDTVLNAEATAYATARALGLRAKIDEQTGWHKS FT LSNVGVNGVTGISADVFWDLQDPATDAGLLNQNDVTTLVRKDGFRFWGSRCLSDDPLFA FT FENYTRTAQVLTDTMAEAHMWAVDKPLNPSLARDIIEGIRAKMRSLVSQGYLIGGDCWL FT DESVNDKDTLKAGKLTIDYDYTPVPPLENLMLRQRITDQYLVNFSSQVSA" FT RBS complement(66065..66071) FT /note="possible RBS" FT CDS complement(66199..66771) FT /transl_table=11 FT /gene="STY2889" FT /product="putative DNA-invertase" FT /note="Similar to many e.g. Bacteriophage Mu DNA-invertase FT SW:DNIV_BPMU (P03015) (192 aa) fasta scores: E(): 0, 76.0% FT id in 183 aa and Bacteriophage P1 DNA-invertase cin FT SW:DNIV_BPP1 (P10311) (186 aa) fasta scores: E(): 0, 79.1% FT id in 182 aa" FT /note="Fasta hit to P77170 (196 aa), 38% identity in 186 aa FT overlap" FT /note="Fasta hit to P77574 (196 aa), 38% identity in 186 aa FT overlap" FT /note="Paralogue of E. coli pin (DNIV_ECOLI); Fasta hit to FT DNIV_ECOLI (184 aa), 87% identity in 181 aa overlap" FT /db_xref="GOA:Q8Z4H4" FT /db_xref="HSSP:2RSL" FT /db_xref="InterPro:IPR006118" FT /db_xref="InterPro:IPR006119" FT /db_xref="InterPro:IPR006120" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR012287" FT /db_xref="UniProtKB/TrEMBL:Q8Z4H4" FT /protein_id="CAD05881.1" FT /translation="MIMLIGYVRVSTNDQNTDLQRNALNCAGCERIFEDKISGTKSDRP FT GLKKLLRTLSAGDTLVVWKLDRLGRSMRHLVTLIEELRQRGVNFRSLTDSIDTSTPMGR FT FFFHVMGALAEMERELIVERTRAGLAAARAKGRVGGRRPKLTSEQWAQIGRLLEAGESR FT QRIALIFDVGVSTIYRKFPANKNNKSP" FT misc_feature complement(66235..66759) FT /note="Pfam match to entry PF00239 recombinase, FT Site-specific recombinases, score 371.80, E-value 6.9e-108" FT misc_feature complement(66565..66603) FT /note="PS00398 Site-specific recombinases signature 2" FT misc_feature complement(66727..66753) FT /note="PS00397 Site-specific recombinases active site" FT misc_feature 67379..67397 FT /note="possible Fur box" FT RBS 67438..67441 FT /note="possible RBS" FT CDS 67449..68564 FT /transl_table=11 FT /gene="iroB" FT /gene_synonym="STY2890" FT /product="putative glycosyltransferase" FT /note="Identical to Salmonella typhi AJB70 FT glucosyl-transferase homolog iroB TR:P96056 (EMBL:U62129) FT (371 aa) fasta scores: E(): 0, 100.0% id in 371 aa. Similar FT to glycosyltransferases e.g. Streptomyces argillaceus FT glycosyltransferase MtmGII TR:O87479 (EMBL:AF077869) (379 FT aa) fasta scores: E(): 1.4e-24, 32.0% id in 384 aa" FT /db_xref="GOA:P96056" FT /db_xref="InterPro:IPR002213" FT /db_xref="InterPro:IPR010610" FT /db_xref="UniProtKB/TrEMBL:P96056" FT /protein_id="CAD05882.1" FT /translation="MRILFVGPPLYGLLYPVLSLAQAFRVNGHEVLIASGGKFAQKAAE FT AGLVVFDAAPGFDSEAGYRRQEALRKENNIGTKMGNFSFFSEEMTDPLVAFAGQWRPDL FT IVYPPLGVVGPLIAAKYDIPVVMQTVGFGHTPWHIKGVTKSLSNAYRRHGVSAPPRDLA FT WIDVTPPSMSILQNDGEPVISMQYVPYNGGAVWEEWWERTPDRKRLLVSLGTVKPMVDG FT LDLISWVMDSASEVDAEIILHLPANARSDLRSLPPNVRLVDWLPMGIFLNGADGFIHHG FT GAGNTLTALHAGIPQIVFGQGADRPVNARAVVERGCGIIPGKSGLTSSMINTFLGNRAL FT RETSQEVAAEMAAQPCPTEVAKKLIAMLQHG" FT RBS 68633..68640 FT /note="possible RBS" FT CDS 68645..72301 FT /transl_table=11 FT /gene="iroC" FT /gene_synonym="STY2891" FT /product="putative ABC transporter protein" FT /note="Similar to many e.g. Salmonella typhi AJB70 ATP FT binding cassette protein iroC TR:P96057 (EMBL:U62129) (1218 FT aa) fasta scores: E(): 0, 95.3% id in 1223 aa and FT Mycobacterium tuberculosis putative ABC transporter Rv0194 FT or MTV033.02 TR:O53645 (EMBL:AL021928) (1194 aa) fasta FT scores: E(): 0, 37.8% id in 1203 aa. Conatins hydrophobic, FT probable membrane spanning regions" FT /db_xref="GOA:Q8Z4H3" FT /db_xref="HSSP:1MT0" FT /db_xref="InterPro:IPR001140" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR011527" FT /db_xref="InterPro:IPR017871" FT /db_xref="InterPro:IPR017940" FT /db_xref="UniProtKB/TrEMBL:Q8Z4H3" FT /protein_id="CAD05883.1" FT /translation="MPATHSPMPARAWIVRLARVCWERKTLSIIVIVASVSTILLAALT FT PLITRQAVNDAIAGDTTRLPLLACGLLLIALFDFIGNYVRRGYAGELSLWVQHTLRSRA FT FDSIQKLDGAGQDALRTGQVISRTNSDLQQVHTLLQMCPVPLAVLTYYVAGIAVMLWMS FT PSMTLIVICVLAALAITALRARRRVFAQTGLASDRLAHMTEHMREVLEQISVVKSCVAE FT LRETRWLDGQSRQMVRVRIGAAISQAMPGATMLALPVIGQIVLLCYGGWSVMNGRIDLG FT TFVAFASFLAMLTGPTRVLASFLVIAQRTQASVERVFALIDTRSRMEDGTESVEGQIIG FT LDVEKMSFHYDNGNRILNEISFSIHAGETVAVVGASGSGKSTLLMLLARFYDPTSGGVW FT LNTTTGQQNIRDLKLTALRRRVGVVFEDAFLFAGTVAENIAYGHPQATQDDIRRAADAA FT GASGFINALPQGFNTRLTERGSNLSGGQRQRIALARALITAPELLILDDTTSAVDAGTE FT AEINTALGRYADNEHMLLVIARRRSTLQLADRIVVLDKGRVVDIGTQAELDARCPTFRS FT LMSGEGDFLALAPAEQRTLWPTTQAVKSDDAHERQTTAGKGFVDRMTRVPERAVQMALA FT GHGSQVSSLLTPVAWMFVIAALLIALDSAAGVGVLVLLQRGIDSGVAAGDMSTIGICAL FT LALCLVAIGWCCYALQTIFAARAAESVQHTVRLRSFSHLLRLSLPWHEKHIDSRLTRMT FT VDVDSLARFLQNGLASAATSIVTMVAIAAAMFWLDPILALTALSAVPVVILATWIYRRL FT SSPAYAQARLEIGKVNSTLQEKVSGMRVVQSHGQQKQEAARLRALSDNFRATRVRAQKY FT LAVYFPFLTFCTEAAYAAVLLIGATRVAEGEMTPGILAAFFLLLGQFYGPVQQLSGIVD FT SWQQATASGKHINALLATEETENIEPSSITPGTGGALRLEALTFRYPEKTQPVLDNLSL FT TIPPGTVVAVVGRSGAGKSTLIKLLAGLYSPGSGQIRVGERLIDAASLSDYRRQTGLVT FT QDVALFSGDIAENIRYSRPDSSDTEVEIAARQAGLFETVQHLPLGFRTPVNNGGTDLSA FT GQRQLIALARAQLAQAHILLLDEATARIDRSAEERLITSLTGVTHTEKRIALIVAHRLT FT TARRCDVIVVIDKGCIAEYGSHEQLIAAHGLYARLWRASVGQTRDTQGEVVG" FT misc_feature 68726..69535 FT /note="Pfam match to entry PF00664 ABC_membrane, ABC FT transporter transmembrane region., score 86.80, E-value FT 4.5e-22" FT misc_feature 69743..70312 FT /note="Pfam match to entry PF00005 ABC_tran, ABC FT transporter, score 211.30, E-value 1.4e-59" FT misc_feature 69764..69787 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)" FT misc_feature 70088..70132 FT /note="PS00211 ABC transporters family signature" FT misc_feature 70598..71410 FT /note="Pfam match to entry PF00664 ABC_membrane, ABC FT transporter transmembrane region., score 117.10, E-value FT 3.2e-31" FT misc_feature 71624..72184 FT /note="Pfam match to entry PF00005 ABC_tran, ABC FT transporter, score 160.80, E-value 2.4e-44" FT misc_feature 71645..71668 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)" FT CDS 72411..73655 FT /transl_table=11 FT /gene="iroD" FT /gene_synonym="STY2892" FT /product="putative ferric enterochelin esterase" FT /note="Similar to Salmonella cholerae-suis ferric FT enterochelin esterase homolog iroD TR:O54505 (EMBL:U97227) FT (422 aa) fasta scores: E(): 0, 94.2% id in 414 aa" FT /note="Paralogue of E. coli fes (FES_ECOLI); Fasta hit to FT FES_ECOLI (374 aa), 31% identity in 375 aa overlap" FT /db_xref="InterPro:IPR000801" FT /db_xref="UniProtKB/TrEMBL:Q8Z4H2" FT /protein_id="CAD05884.1" FT /translation="MRLSPPVAPVAIQTATRLRRQLAAGSQVDASHFWREANSLALPLV FT TAINGADDEREVTFLWRAASPLRGVYVRLNRVTDKDNVAKGMMTQLPTTDIWHLTLRLP FT ASYCGSYTMVEIPPKTPDETVLQLGSRFASLVGKADPLNSTPGINVRGNAQESVLALDH FT APAQEEWSGCRAYAGQLFTSEHRLAGQRRRVRLYLPDVPVEQPLGLLVLTDGEIWFDHL FT GVSAAIDAAIRSGRIAPVAVLGVDNINARERVAILGGRRELVLDIAERLLPTLRAKYPE FT RQWADRTQTVLAGQSLGGVTALMAARHAPESFGLVLSHSPSMWWTPDNRNRPPHFSAEE FT RSWVSEHVLSAPSPAVRTHLCVGSLEGSTVPQVKQLHEKLRAAGVESHCCVYTGGHDYA FT WWRGALIDGLRLLPR" FT RBS 73672..73676 FT /note="possible RBS" FT CDS 73687..74604 FT /transl_table=11 FT /gene="iroE" FT /gene_synonym="STY2893" FT /product="putative exported protein" FT /note="Identical to Salmonella cholerae-suis IroE protein FT iroE TR:O54506 (EMBL:U97227) (305 aa) fasta scores: E(): 0, FT 100.0% id in 305 aa. Contains a probable N-terminal signal FT sequence" FT /db_xref="UniProtKB/TrEMBL:O54506" FT /protein_id="CAD05885.1" FT /translation="MYGRQYHNKCYRVALFLVSFCFSALSYAQPDMQPLGPNMADKGSG FT YYHFRVNDFQSADGARHYRVWTAIPNKAAPPSGYPVLYMLDGNAVMDRLPETLLKQLAD FT HSPPVIVAIGYQTNLPFDLNGRAYDYTPAPGIDRDDSENNPRFHRKTGGGPAFRQLLER FT HIAPQVEQGITINPERRGIWGHSYGGLFVLDSWLSSSFFHIYYSASPSLSRDNFALLNR FT LTAVKPSPFCHKKLIIMEGSASNGDSRQRQMAELLQKVQETVRTLENNGVNAALQHYPG FT LGHGPMFNASFRSALLGISREPAS" FT CDS complement(74664..76844) FT /transl_table=11 FT /gene="iroN" FT /gene_synonym="STY2894" FT /product="TonB-dependent outer membrane siderophore FT receptor protein" FT /note="Similar to Salmonella cholerae-suis TonB-dependent FT outer membrane siderophore receptor protein iroN TR:O54507 FT (EMBL:U97227) (727 aa) fasta scores: E(): 0, 99.9% id in FT 727 aa" FT /note="Fasta hit to CIRA_ECOLI (663 aa), 34% identity in FT 731 aa overlap" FT /note="Paralogue of E. coli fepA (FEPA_ECOLI); Fasta hit to FT FEPA_ECOLI (746 aa), 52% identity in 753 aa overlap" FT /db_xref="GOA:Q8Z4H1" FT /db_xref="HSSP:1FEP" FT /db_xref="InterPro:IPR000531" FT /db_xref="InterPro:IPR010105" FT /db_xref="InterPro:IPR010917" FT /db_xref="InterPro:IPR012910" FT /db_xref="UniProtKB/TrEMBL:Q8Z4H1" FT /protein_id="CAD05886.1" FT /translation="MGMRVKKFIWLITVVSTGINSPLSAAESTDDNGETIVVESTAEQV FT LKQQPGVSIITRDDIQKNPPVNDLADIIRKMPGVNLTSNSASGTRGNNRQIDIRGMGPE FT NTLVLIDGVPVTSRNSVRYSWRGERDTRGDTNWVPPEMVERIEMIRGPAAARYGSGAAG FT GVVNIITKRPTNDWHGSLSLYTNYPESSKEGDTRRGNFSLSGPLAGDTLTMRLYGNLNR FT TDADSWDINSSAGTKNAAGREGVTNKDINSVFSWKMTPQQILDFEAGYSRQGNIYAGDT FT QNSNSNAVTKSLAQSGRETNRLYRQNYGLTHNGIWGWGQSRLGFYYEKTDNTRMNEGLS FT GGGEGRITNDQTFTTNRLTSYRTSGEVNVPVIWLFEQTLTVGAEWNRDELNDPSSTSLT FT VKDSNIAGIPGSAANRSSKNKSEISALYVEDNIEPMAGTNIIPGLRFDYLSESGSNFSP FT SLNLSQELGEFVKVKAGIARAFKAPNLYQTSEGYLLYSKGNGCPKDITSGGCYLVGNKN FT LDPEISINKEIGLEFTVDDYHASVTYFRNDYQNKIVAGDQIIGRSASGAYVLQWQNGGK FT ALIEGIEASMAVPLMPDRLNWNTNATYMITSEQKDTGNPLSIIPKYTVNTFLDWTITNA FT LSANVNWTLYGKQKPRTHAESRSEETKGLSGKALGAYSLVGANVNYDINKNLRLNVGIS FT NIFDKQIYRSAEGANTYNEPGRAYYAGVTASF" FT misc_feature complement(74667..74720) FT /note="PS01156 TonB-dependent receptor proteins signature FT 2" FT misc_feature complement(74667..75005) FT /note="Pfam match to entry PF00593 TonB_boxC, TonB FT dependent receptor C-terminal region, score 109.30, E-value FT 5e-29" FT misc_feature complement(76185..76214) FT /note="PS00449 ATP synthase a subunit signature" FT misc_feature complement(76930..76948) FT /note="possible Fur box motif" FT CDS 77174..77416 FT /transl_table=11 FT /gene="STY2895" FT /product="hypothetical protein" FT /note="Unknown function" FT /db_xref="UniProtKB/TrEMBL:Q8Z4H0" FT /protein_id="CAD05887.1" FT /translation="MRFRVHRRFPVDGKPFLQFAVRVMAGSDTIVVIRYMTMKVMLAPK FT YKAPGNNYQALCRQKTIKHRFLVLQDLLENMATHS" FT CDS complement(77866..78918) FT /transl_table=11 FT /gene="STY2897" FT /product="conserved hypothetical protein" FT /note="Similar to e.g. Salmonella dublin PipB protein FT TR:O85307 (EMBL:AF060858) (291 aa) fasta scores: E(): FT 3.8e-24, 34.3% id in 265 aa and to the C-terminal half of FT Anabaena sp. HglK protein involved in localization of FT heterocyst specific glycolipids hglK TR:Q44230 FT (EMBL:U13768) (727 aa) fasta scores: E(): 4.2e-12, 34.0% id FT in 203 aa. Knockouts of pipB result in decreased FT inflammatory response" FT /db_xref="GOA:Q8Z4G9" FT /db_xref="InterPro:IPR001646" FT /db_xref="UniProtKB/Swiss-Prot:Q8Z4G9" FT /protein_id="CAD05888.1" FT /translation="MQRSLDSLAGMATSAFGAGTSAAMRQATSPKTILQHIINFFTCGG FT IRRRNETQYQELIETMAETLKSSMSDRGAPLPENIILDDVDGCRVEFNLPGENNEAGQV FT IVRVSKGDNSETREIPLASFEKICRALLFRCEFSLPQDSVILTAQGGMNLKGAVLTGAN FT LTAENLCDADLSGADLEGAILFMADCDGANFKGANLSGASLGDSNLTNACLEDSIMCGA FT TLDRANLTGANLQHTSLLGCSMVECNCSGANMDHANVSGSTLIRADMSGATLKGATIMA FT AIMEGAVLTRANLQKASFTATNLDGADLSEANLRNTSFKDCTLTDLRTEDATMSTSTQT FT LFNVFYSENI" FT misc_feature complement(77941..78060) FT /note="Pfam match to entry PF00805 Pentapeptide, FT Pentapeptide repeats (8 copies), score 40.00, E-value FT 5.5e-08" FT misc_feature complement(78061..78180) FT /note="Pfam match to entry PF00805 Pentapeptide, FT Pentapeptide repeats (8 copies), score 37.70, E-value FT 2.7e-07" FT misc_feature complement(78196..78315) FT /note="Pfam match to entry PF00805 Pentapeptide, FT Pentapeptide repeats (8 copies), score 33.60, E-value FT 4.6e-06" FT misc_feature complement(78316..78435) FT /note="Pfam match to entry PF00805 Pentapeptide, FT Pentapeptide repeats (8 copies), score 36.10, E-value FT 7.8e-07" FT RBS complement(78926..78929) FT /note="possible RBS" FT CDS 79435..80364 FT /transl_table=11 FT /gene="virK" FT /gene_synonym="STY2899" FT /product="virulence protein" FT /note="Identical to Salmonella typhi AJB70 VirK protein FT TR:O68287 (EMBL:AF029845) (297 aa) fasta scores: E(): 0, FT 100.0% id in 297 aa. Similar to Salmonella typhimurium FT SL1344 protein VirK TR:AAB80743 (EMBL:AF020810) (294 aa) FT fasta scores: E(): 0, 99.3% id in 294 aa" FT /note="Paralogue of E. coli YBJX_ECOLI; Fasta hit to FT YBJX_ECOLI (330 aa), 37% identity in 318 aa overlap" FT /db_xref="InterPro:IPR007488" FT /db_xref="UniProtKB/TrEMBL:Q8Z4G8" FT /protein_id="CAD05889.1" FT /translation="MTMQQSDMERYNPLLMLKEVMAQTPYRHKRWGERKFRYKFVLRCL FT INPVTTIKYFNELCHLSQPRTLIIHRPLLPAKIQRPYLYTGLSIRCRAKAILEHYQFVQ FT SFPESKIKKILLSEEQILLAHLEGKNGALVDIYCGPCGYDREGELTLTLCFNDTPLARL FT SFSFIRHEGKQIALVAGLQGPSKHIGPQVIRNATKDCYGLFPKRMLYEAFATLMQACNV FT DEIYAVSENNHVYRQLRYLFQKKKTFVASYSEFWESLNGVKKGALYHLPSQVMRKAPES FT IPSKKRAEYRKRYHILDTIIQEVNSLSR" FT RBS 80648..80652 FT /note="possible RBS" FT CDS 80658..81554 FT /transl_table=11 FT /gene="mig-14" FT /gene_synonym="STY2900" FT /product="putative transcriptional regulator" FT /note="Similar to Salmonella typhimurium putative FT transcription activator Mig-14 TR:O30909 (EMBL:AF020810) FT (298 aa) fasta scores: E(): 0, 98.3% id in 298 aa" FT /db_xref="InterPro:IPR009977" FT /db_xref="UniProtKB/TrEMBL:Q8Z4G7" FT /protein_id="CAD05890.1" FT /translation="MKIQEVKRILTRWQPSSFTLYREVFTQYGGSINMHPDIVDYFMKR FT HNWHFKFFHYKEDDKIKGAYFICNDQNIGILTRRTFPLSSDEILIPMAPDLRCFLPDRT FT NRLSALHQPQIRNAIWKLARKKQNCLVKETFSSKFEKTRRNEYQRFLKKGGSVKSVADC FT SSDELTHIFIELFRSRFGNTSSCYPADNLANFFSQLHHLLFGHILYIEGIPCAFDIVLK FT SESQMNVYFDVSNGAIKNECRPLSPGSILMWLNISRARHYCQERQKKLLFSIGILKPEW FT EYKRMWSTPYFTGKSIC" FT CDS complement(82279..83289) FT /pseudo FT /transl_table=11 FT /gene="STY2901" FT /product="putative cation transporter (pseudogene)" FT /note="Similar to Salmonella enterica SL1344 putative FT nickel transport protein NxiA nxiA TR:AAG31202 FT (EMBL:AF020810) (337 aa) fasta scores: E(): 0, 98.8% id in FT 337 aa. Similar to Alcaligenes eutrophus high-affinity FT nickel transport protein HoxN SW:HOXN_ALCEU (P23516) (351 FT aa) fasta scores: E(): 0, 51.0% id in 337 aa and FT Bradyrhizobium japonicum hydrogenase nickel incorporation FT protein HupN hupN SW:HUPN_BRAJA (Q45247) (381 aa) fasta FT scores: E(): 0, 53.5% id in 316 aa. The start site is FT predicted by comparison with homologues with experimental FT data, suggesting that this is a pseudogene with a stop FT codon at codon 24" FT CDS complement(83422..84837) FT /transl_table=11 FT /gene="tctE" FT /gene_synonym="STY2903" FT /product="putative two-component system sensor kinase" FT /note="Similar to Salmonella typhi TctE TR:O68289 FT (EMBL:AF029846) (439 aa) fasta scores: E(): 0, 99.8% id in FT 421 aa, but with a different N-terminus. Similar to e.g. FT Streptomyces coelicolor and Streptomyces lividans FT two-component system CutS proteins cutS or SC2E9.04 FT SW:CUTS_STRCO (Q03757) (414 aa) fasta scores: E(): 1.3e-17, FT 29.2% id in 346 aa" FT /db_xref="GOA:Q8Z4G6" FT /db_xref="HSSP:1BXD" FT /db_xref="InterPro:IPR003594" FT /db_xref="InterPro:IPR003660" FT /db_xref="InterPro:IPR003661" FT /db_xref="InterPro:IPR004358" FT /db_xref="InterPro:IPR005467" FT /db_xref="InterPro:IPR009082" FT /db_xref="InterPro:IPR013727" FT /db_xref="UniProtKB/TrEMBL:Q8Z4G6" FT /protein_id="CAD05892.1" FT /translation="MKWVKPQSLYLQLLLFLGLPLILLWGLSAFNSYVNALQAATQAYD FT RTLLSSARTVSERLVVRNNHLEVNVPWVVLDSFELNMNDRLYYKVVDPSGKVISGYDDL FT PAMPPATPRTRLYPALAWFYHTEYRGEAIRVARLLQPVNEGGIIGMAEVYVAETLQSRR FT YLAGQLLFSSWISQGLLVLLTLVLVGWLLRRILRPMRQLSSLMVRREPGLLTPLPELLP FT WSETRLLIVAFNRYIDRLRGILSRQERFSADASHQLKTPLAVLKTQAAVALASQHPHHW FT YESLQAMSVTLDSTIQLTERLLQLSAVKHKEQGERRFSPVNLYDIVQSGCFTRLAQARS FT KHIDLGYEGEQEAMWIEGDEVLLSELCGNLLDNALKYTPEQGIVTARLERDGDAVTLVV FT EDSGPGIDNEHIHLALQPFHRLDNVGNVAGAGIGLALVNDIARLHRTHPHFSRSEALGG FT LYVRIRFLSLVPQ" FT misc_feature complement(83440..84072) FT /note="Pfam match to entry PF00512 signal, Histidine FT kinase, score 88.70, E-value 1.2e-22" FT misc_feature complement(84112..84321) FT /note="Pfam match to entry PF00672 DUF5, HAMP domain, score FT 39.60, E-value 6.9e-08" FT CDS complement(84824..85498) FT /transl_table=11 FT /gene="tctD" FT /gene_synonym="STY2904" FT /product="transcriptional regulator" FT /note="Similar to Salmonella typhimurium transcriptional FT regulatory protein TctD SW:TCTD_SALTY (P22104) (224 aa) FT fasta scores: E(): 0, 99.1% id in 224 aa and Salmonella FT typhi AJB70 TctD protein TR:O68288 (EMBL:AF029846) (223 aa) FT fasta scores: E(): 0, 97.3% id in 224 aa" FT /note="Fasta hit to TORR_ECOLI (230 aa), 31% identity in FT 226 aa overlap" FT /note="Fasta hit to BAER_ECOLI (240 aa), 33% identity in FT 224 aa overlap" FT /note="Fasta hit to YLCA_ECOLI (227 aa), 38% identity in FT 226 aa overlap" FT /note="Fasta hit to YEDW_ECOLI (239 aa), 37% identity in FT 220 aa overlap" FT /note="Fasta hit to OMPR_ECOLI (239 aa), 36% identity in FT 228 aa overlap" FT /note="Fasta hit to CPXR_ECOLI (232 aa), 39% identity in FT 234 aa overlap" FT /note="Fasta hit to PHOB_ECOLI (229 aa), 36% identity in FT 220 aa overlap" FT /note="Fasta hit to PHOP_ECOLI (223 aa), 34% identity in FT 221 aa overlap" FT /note="Fasta hit to BASR_ECOLI (222 aa), 41% identity in FT 223 aa overlap" FT /note="Fasta hit to KDPE_ECOLI (225 aa), 31% identity in FT 222 aa overlap" FT /note="Fasta hit to CREB_ECOLI (229 aa), 37% identity in FT 222 aa overlap" FT /note="Paralogue of E. coli YGIX_ECOLI; Fasta hit to FT YGIX_ECOLI (219 aa), 43% identity in 219 aa overlap" FT /db_xref="GOA:Q8Z4G5" FT /db_xref="HSSP:1KGS" FT /db_xref="InterPro:IPR001789" FT /db_xref="InterPro:IPR001867" FT /db_xref="InterPro:IPR011006" FT /db_xref="UniProtKB/TrEMBL:Q8Z4G5" FT /protein_id="CAD05893.1" FT /translation="MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMY FT ALMVLDINMPGMDGLEVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFE FT LEELDARLRALLRRSAGLVHEVQQLGELIFHDEGYFLLQGQPLALTPREQALLTVLMYR FT RTRPVSRQQLFEQVFSLNDEVSPESIELYIHRLRKKLQGSDVRITTLRGLGYVLERGDE FT VG" FT misc_feature complement(84857..85066) FT /note="Pfam match to entry PF00486 trans_reg_C, FT Transcriptional regulatory protein, C terminal, score FT 99.80, E-value 1.5e-28" FT misc_feature complement(85160..85237) FT /note="PS00217 Sugar transport proteins signature 2" FT misc_feature complement(85163..85498) FT /note="Pfam match to entry PF00072 response_reg, Response FT regulator receiver domain, score 129.40, E-value 6.7e-35" FT CDS 85537..85656 FT /transl_table=11 FT /gene="STY2905" FT /product="hypothetical protein" FT /note="Unknown function. Improbable ORF" FT /db_xref="UniProtKB/TrEMBL:Q8Z4G4" FT /protein_id="CAD05894.1" FT /translation="MKGYCFNNHATELLHVGSHNHKNLLPNLKNPDVRREDKK" FT RBS 85642..85645 FT /note="possible RBS" FT CDS 85653..86462 FT /transl_table=11 FT /gene="STY2906" FT /product="putative exported protein" FT /note="Similar to Bacillus subtilis hypothetical YflP FT protein yflP TR:O34439 (EMBL:Z99108) (259 aa) fasta scores: FT E(): 1.7e-11, 26.6% id in 222 aa. Similar to ORFs from FT Comamonas testosteroni 3-(3-hydroxyphenyl)propionic acid FT degradation pathway and Alcaligenes eutrophus pathway for FT biosynthesis of FT poly(3-hydroxybutyrate-co-4-hydroxybutyrate); Alcaligenes FT eutrophus hypothetical protein SW:YGB7_ALCEU (Q44018) (327 FT aa) fasta scores: E(): 3.6e-10, 27.2% id in 217 aa and FT Comamonas testosteroni ORF5 protein TR:Q9S154 FT (EMBL:AB024335) (278 aa) fasta scores: E(): 3.4e-06, 23.9% FT id in 259 aa. Contains a probable N-terminal signal FT sequence, and an internal 50 aa deletion relative to S. FT typhimurium" FT /db_xref="GOA:Q8Z4G3" FT /db_xref="InterPro:IPR005064" FT /db_xref="UniProtKB/TrEMBL:Q8Z4G3" FT /protein_id="CAD05895.1" FT /translation="MKKQLLRTLTASILLMSTSVLAQEAPSRTECIAPAKPGGGSLLNL FT SQGKFGRYGVDDVRWLASVGTDYGMIAVRADSPWKTLKDLMTAMEKDPNSVVIGAGASI FT GSQDWMKSALLAQKANVDPHKMRYVAFEGGGEPVTALMGNHVQVVSGDLSEMVPYLGGD FT KIRVLAVFSENRLLGQLANVPTAKEQGYDLVWPIIRGFYVGPKVSDADYQWWVDTFKKL FT QQTDEFKKQRDLRGLFEFDMTGQQLDDYVKKQVTDYREQAKAFGLAK" FT RBS 86467..86471 FT /note="possible RBS" FT CDS 86477..86908 FT /transl_table=11 FT /gene="STY2907" FT /product="putative membrane protein" FT /note="Unknown function. Contains hydrophobic, probable FT membrane-spanning regions" FT /db_xref="UniProtKB/TrEMBL:Q8Z4G2" FT /protein_id="CAD05896.1" FT /translation="MSDRIFAGIWLLLCIAGLFIAWQIQSEYSYEPVGPRPFPLGIIGL FT MALCALALLLRHPDTVSWPRRHVLQKLITMIIILLMYAWGFEWLGFPIATALLTMVIGM FT LFGATIPAAGISGAVLGILLWYAFDRLLDVTLPLGAWLS" FT RBS 86910..86913 FT /note="possible RBS" FT CDS 86919..88433 FT /transl_table=11 FT /gene="STY2908" FT /product="putative membrane protein" FT /note="Similar to Agrobacterium vitis hypothetical protein FT SW:YZ2R_AGRVI (P70795) (502 aa) fasta scores: E(): 0, 41.6% FT id in 495 aa. Contains a region highly similar to part of FT Pseudomonas putida ammonia monooxygenase amoA TR:O69766 FT (EMBL:Y14338) (509 aa) fasta scores: E(): 8.9e-28, 52.7% id FT in 165 aa. Contains hydrophobic, probable membrane-spanning FT regions" FT /db_xref="InterPro:IPR002823" FT /db_xref="UniProtKB/TrEMBL:Q8Z4G1" FT /protein_id="CAD05897.1" FT /translation="MDTWICLSQGFAVAMTPENLVIALIGCFVGTIVGLLPGLGPINGV FT AILLPLAFALHLPAESALILLATVYIGCEYGGRISSILLNVPGDAAAIMTALDGYPMAQ FT QGKGGVALSISAVSSFFGSLIAIGGIILFAPLLAQWSLAFGPAEYFALMVFAIACLGSM FT MAQNPLKSFLAALIGLGLATVGVDANTGVYRFTFDSVHLSDGVQFIVVVIGLFSVSEIL FT LMLEHTSSGQTMVRKTGRMLFNLKEGAQCIGTTLRSSVIGFFVGVLPGAGATIASAITY FT MTEKKLSGNSDSFGKGDIRGVAAPEAANNASACGSFIPMLTLGVPGSGTTAVMMGALTL FT YNITPGPAMFTEQPDIVWGLIAALLIANVMLLIMNIPLIGLFTRMLTIPLWFLVPAIAA FT VSAVGVYAVHSPTFDLVLMVALGVLGYILRKMHFPMSPLILGCVLGEMLEQNLRRALSI FT SNGNMAILWQSGVAKALLIMAIIVIVVPPVLRLIRKHSRKPQVDAS" FT misc_feature 86973..88238 FT /note="Pfam match to entry PF01970 DUF112, Integral FT membrane protein DUF112, score 166.50, E-value 4.4e-46" FT CDS 88727..89713 FT /transl_table=11 FT /gene="STY2909" FT /product="gab protein homolog" FT /note="Similar to Salmonella enterica o360 gene TR:AAG31208 FT (EMBL:AF020810) (296 aa) fasta scores: E(): 0, 99.0% id in FT 296 aa, and to Escherichia coli gab protein (involved in FT control of utilization of gama-aminobutyric acid) TR:Q9ZAZ9 FT (EMBL:U68243) (360 aa) fasta scores: E(): 0, 84.4% id in FT 327 aa" FT /db_xref="GOA:Q8Z4G0" FT /db_xref="InterPro:IPR015038" FT /db_xref="UniProtKB/Swiss-Prot:Q8Z4G0" FT /protein_id="CAD05898.1" FT /translation="MILMNALTAVKANTDDLAQRHTGFILAPSAQSPRLLALTFTADTT FT RQFLHQVAQWPVQALEYKSFLRFKIGKILDDLCGNQLQPLLIKTLLNRAQGALLISAEG FT IDDVAQAEEMVKLATAVAHLIGRSNYDAMSGQYYARFVVKNVDNSDSYLRQPHRVMELH FT NDGTYVEEVTDYVLMMKIDEQNMEGGNSLLLHLDDWEHLESFFTHPLARRVMRWAAPPS FT KNVSHDVWHPVFDVDQQGRPVMRYIDQFVQPKDFEEGVWLSELSDALETSQNILSVPVP FT VGKFLLINNLFWLHGRDRFTPHPDLRRELMRQRGYFAYAASHYQTHQ" FT RBS 89725..89729 FT /note="possible RBS" FT CDS 89739..91007 FT /transl_table=11 FT /gene="STY2910" FT /gene_synonym="ygaF" FT /product="putative GAB DTP gene cluster repressor" FT /note="Similar to Escherichia coli gab DTP gene cluster FT repressor gabC TR:Q9ZAZ8 (EMBL:U68244) (332 aa) fasta FT scores: E(): 0, 78.4% id in 338 aa. This protein is FT described as a repressor having a start codon at codon 90. FT It is not clear whether this is derived from experimental FT evidence. Shows weak similarity to oxidoreductases e.g. FT Escherichia coli anaerobic glycerol-3-phosphate FT dehydrogenase subunit A SW:GLPA_ECOLI (P13032) (542 aa) FT fasta scores: E(): 1.3e-05, 22.6% id in 318 aa" FT /note="Orthologue of E. coli ygaF (YGAF_ECOLI); Fasta hit FT to YGAF_ECOLI (444 aa), 88% identity in 422 aa overlap" FT /db_xref="GOA:Q8Z4F9" FT /db_xref="InterPro:IPR006076" FT /db_xref="InterPro:IPR015657" FT /db_xref="UniProtKB/TrEMBL:Q8Z4F9" FT /protein_id="CAD05899.1" FT /translation="MYDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESAPACHQTGH FT NSGVIHAGVYYTPGSLKARFCLAGNQATKTFCDQNNIRYDTCGKMLVATSELEMARMRA FT LWERTAANGLEREWLNAAELREREPNIIGLGGIFVPSSGIVSYRDVATAMANRFQAKGG FT EIIYHAEVSALTEHAAGVIIRTSQGREIETATLIGCAGLMADRLVKMLGVEPGFIICPF FT RGEYFRLAPRHNRIVNHLIYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVLALKREGYRK FT RDVSFTDTLEIFRSAGIRRVLQNHLLSGLGEMKNSLCKSGYLRRVQKYCPSLTVNDLQP FT WPAGVRAQAVSPDGKLIDDFLFVTTPRSIHTCNAPSPAATSAIPIGAHIVSKVQALRAS FT QSNPGRTLRAARSVDALHAAFTR" FT RBS 91018..91023 FT /note="possible RBS" FT CDS 91029..92477 FT /transl_table=11 FT /gene="STY2911" FT /gene_synonym="gabD" FT /product="succinate-semialdehyde dehydrogenase" FT /EC_number="1.2.1.16" FT /note="Fasta hit to ALDA_ECOLI (478 aa), 39% identity in FT 464 aa overlap" FT /note="Fasta hit to FEAB_ECOLI (499 aa), 36% identity in FT 480 aa overlap" FT /note="Fasta hit to YNEI_ECOLI (462 aa), 32% identity in FT 445 aa overlap" FT /note="Fasta hit to ALDB_ECOLI (512 aa), 33% identity in FT 490 aa overlap" FT /note="Fasta hit to DHAB_ECOLI (489 aa), 37% identity in FT 481 aa overlap" FT /note="Fasta hit to DHAL_ECOLI (495 aa), 34% identity in FT 485 aa overlap" FT /note="Fasta hit to ASTD_ECOLI (492 aa), 32% identity in FT 470 aa overlap" FT /note="Fasta hit to YDCW_ECOLI (474 aa), 37% identity in FT 477 aa overlap" FT /note="Orthologue of E. coli gabD (GABD_ECOLI); Fasta hit FT to GABD_ECOLI (482 aa), 90% identity in 482 aa overlap" FT /db_xref="GOA:Q8Z4F8" FT /db_xref="HSSP:1BXS" FT /db_xref="InterPro:IPR010102" FT /db_xref="InterPro:IPR015590" FT /db_xref="InterPro:IPR016160" FT /db_xref="InterPro:IPR016161" FT /db_xref="InterPro:IPR016162" FT /db_xref="UniProtKB/TrEMBL:Q8Z4F8" FT /protein_id="CAD05900.1" FT /translation="MQLNDSTLFRQQAFIDGDWRDARGGDVIPVSNPANGKPLGNVPKM FT GAEETRDAINAANRALPAWRALTAKERANILRRWFNLMMEHQDDLARLMTLEQGKPLAE FT AKGEISYAASFIEWFAEEGKRIYGDTIPGHQTDKRLLVIKQPIGVTAAITPWNFPSAMI FT TRKAGPALAAGCTMVLKPASQTPFSALALAELAQRAGILAGVFNVVTGSAGDIGGELTS FT NPLVRKLSFTGSTEIGRQLMEQCAKDIKKVSLELGGNAPFIVFDDADLDKAVEGALASK FT FRNAGQTCVCANRLYVQDGVYDRFAEKLNQAVNKLAVGDGLQADVAIGPLIDEKAVAKV FT QEHIADALEKGARVITGGEAHKLGGNFFQPTILADVPDNAKVAKEETFGPLAPLFRFSD FT EADVIRQANDTEFGLAAYFYARDLSRVFRVGEALEYGIVGINTGIISNEVAPFGGIKAS FT GLGREGSKYGIEDYLEIKYMCIGL" FT misc_feature 91080..92474 FT /note="Pfam match to entry PF00171 aldedh, Aldehyde FT dehydrogenase family, score 788.30, E-value 2.9e-233" FT misc_feature 91788..91811 FT /note="PS00687 Aldehyde dehydrogenases glutamic acid active FT site" FT misc_feature 91872..91907 FT /note="PS00070 Aldehyde dehydrogenases cysteine active FT site" FT CDS 92492..93775 FT /transl_table=11 FT /gene="STY2912" FT /gene_synonym="gabT" FT /product="4-aminobutyrate aminotransferase" FT /EC_number="2.6.1.19" FT /note="Fasta hit to GSA_ECOLI (426 aa), 32% identity in 421 FT aa overlap" FT /note="Fasta hit to ARGM_ECOLI (406 aa), 34% identity in FT 404 aa overlap" FT /note="Fasta hit to ARGD_ECOLI (405 aa), 36% identity in FT 411 aa overlap" FT /note="Fasta hit to BIOA_ECOLI (429 aa), 32% identity in FT 353 aa overlap" FT /note="Fasta hit to GOAG_ECOLI (421 aa), 53% identity in FT 421 aa overlap" FT /note="Orthologue of E. coli gabT (GABT_ECOLI); Fasta hit FT to GABT_ECOLI (426 aa), 89% identity in 426 aa overlap" FT /db_xref="GOA:Q8Z4F7" FT /db_xref="HSSP:1QJ3" FT /db_xref="InterPro:IPR004632" FT /db_xref="InterPro:IPR005814" FT /db_xref="InterPro:IPR015421" FT /db_xref="InterPro:IPR015424" FT /db_xref="UniProtKB/TrEMBL:Q8Z4F7" FT /protein_id="CAD05901.1" FT /translation="MNTNNTLMQRCHNAVPRGVGQIHPIFAERAENCRVWDVEGREYLD FT FAGGIAVLNTGHLHPGIVSAVEAQLKKLSHTCFQVLAYEPYLALCERMNQKVPGDFAKK FT TLLVTTGSEAVENAVKIARAATKRSGAIAFSGAYHGRTHYTLSLTGKVHPYSAGMGLMP FT GHVYRALYPCPLHNISDDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFM FT QRLRALCDQHGIMLIADEVQSGAGRTGTLFAMEQMGVAADITTFAKSIAGGFPLAGVTG FT RADVMDAIAPGGLGGTYAGNPIACVAALAVLDIFEQENLLQKANTLGKTLRDGLMEIAE FT THREIGDVRGLGAMIAIELFENGDPGKPNATLTADIVARAREKGLILLSCGPYYNILRI FT LVPLTIEASQIRQGLEIIAQCFDEAKQA" FT misc_feature 92585..93700 FT /note="Pfam match to entry PF00202 aminotran_3, FT Aminotransferases class-III pyridoxal-phosphate, score FT 602.10, E-value 6.7e-209" FT misc_feature 93197..93310 FT /note="PS00600 Aminotransferases class-III FT pyridoxal-phosphate attachment site" FT RBS 93890..93898 FT /note="possible RBS" FT CDS 93905..95305 FT /transl_table=11 FT /gene="STY2913" FT /gene_synonym="gabP" FT /product="GabA permease (4-amino butyrate transport FT carrier)" FT /note="Fasta hit to CYCA_ECOLI (470 aa), 31% identity in FT 450 aa overlap" FT /note="Fasta hit to PHEP_ECOLI (458 aa), 38% identity in FT 422 aa overlap" FT /note="Fasta hit to LYSP_ECOLI (488 aa), 33% identity in FT 469 aa overlap" FT /note="Fasta hit to YIFK_ECOLI (461 aa), 35% identity in FT 415 aa overlap" FT /note="Fasta hit to PROY_ECOLI (457 aa), 37% identity in FT 423 aa overlap" FT /note="Fasta hit to MMUP_ECOLI (475 aa), 37% identity in FT 435 aa overlap" FT /note="Fasta hit to ANSP_ECOLI (499 aa), 33% identity in FT 446 aa overlap" FT /note="Fasta hit to AROP_ECOLI (457 aa), 37% identity in FT 447 aa overlap" FT /note="Orthologue of E. coli gabP (GABP_ECOLI); Fasta hit FT to GABP_ECOLI (466 aa), 92% identity in 466 aa overlap" FT /db_xref="GOA:Q8Z4F6" FT /db_xref="InterPro:IPR002293" FT /db_xref="InterPro:IPR004840" FT /db_xref="InterPro:IPR004841" FT /db_xref="InterPro:IPR011265" FT /db_xref="UniProtKB/TrEMBL:Q8Z4F6" FT /protein_id="CAD05902.1" FT /translation="MGQLSESHALGGGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAGP FT AVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGPWAGYTIGWLYWWFWVL FT VIPLEANIAAIILNSWIPGIPVWLFSLVITLALTGSNLLSVKNYGEFEFWLALSKVIAI FT LAFIALGAAAISGFYPYAEVSGISRLWDHGGFMPNGFGAVLSAMLITMFSFMGAEIVTI FT AAAESDTPDKHIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKSVGSYRSVLELLH FT IPHAKFIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAIMGKTNRSKTPWVAVLL FT STGAAFLTVIVNYYAPAKVFKFLIDSSGAIALLVYLVIAISQLRMRKILLAQGGEIKLK FT MWLYPWLTWLVIGFICFVLVVMLFRPAQQLEVISTGLLGLGIIGTVPIMSRWKKLIRWQ FT KAPLQNLR" FT misc_feature 93932..95254 FT /note="Pfam match to entry PF00324 aa_permeases, Amino acid FT permease, score 723.80, E-value 7.8e-214" FT misc_feature 94031..94123 FT /note="PS00218 Amino acid permeases signature" FT misc_feature 94865..94888 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)" FT CDS 95347..96024 FT /transl_table=11 FT /gene="STY2914" FT /gene_synonym="ygaE" FT /product="putative transcriptional regulator" FT /note="Similar to putative transcriptional regulators e.g. FT Photobacterium leiognathi LuxZ protein luxZ TR:Q9ZAP4 FT (EMBL:U91412) (221 aa) fasta scores: E(): 7.8e-23, 34.4% id FT in 224 aa and Comamonas testosteroni AphS protein aphS FT TR:Q9RHW8 (EMBL:AB008787) (239 aa) fasta scores: E(): FT 3.4e-19, 32.7% id in 214 aa" FT /note="Orthologue of E. coli ygaE (YGAE_ECOLI); Fasta hit FT to YGAE_ECOLI (220 aa), 88% identity in 216 aa overlap" FT /db_xref="GOA:Q8XF51" FT /db_xref="InterPro:IPR000524" FT /db_xref="InterPro:IPR011711" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q8XF51" FT /protein_id="CAD05903.1" FT /translation="MTALSQPTAIDGYRWLKNDIIRGTYQPDEKLRMSLLTARYALGVG FT PLREALSQLVAERLVTVVNQKGYRVASMSEAELLDIFDARANMEAMLVRLAIERGDDAW FT EAEILARAHMLSKLEASDASEHMLDEWDQRHQAFHSAIVAGCGSHYLLQMRERLFDLAA FT RYRFIWLRETVLSVEMLEDKHIQHHTLTEAILAREAARASELMRQHLLTPIPIIRQAMA FT GKM" FT misc_feature 95434..95508 FT /note="PS00043 Bacterial regulatory proteins, gntR family FT signature" FT CDS complement(96046..96495) FT /pseudo FT /transl_table=11 FT /gene="ygaU" FT /gene_synonym="STY2915" FT /product="conserved hypothetical protein (pseudogene)" FT /note="Similar to Escherichia coli unknown protein from FT 2D-PAGE SW:UP04_ECOLI (P39169) (148 aa) fasta scores: E(): FT 0, 93.3% id in 104 aa. Identified on 2D SDS-PAGE in E. FT coli. Pfam hit suggests role in cell-wall (peptidoglycan) FT processing. Contains a stop codon at codon 32" FT misc_feature complement(96055..96201) FT /note="Pfam match to entry PF01476 PG_binding_2, Putative FT peptidoglycan binding domain, score 53.50, E-value 4.6e-12" FT RBS complement(96499..96504) FT /note="possible RBS" FT CDS complement(96595..96753) FT /transl_table=11 FT /gene="STY2916" FT /product="conserved hypothetical protein" FT /note="Similar to e.g. Escherichia coli hypothetical FT protein yqaE SW:YQAE_ECOLI (P77240) (52 aa) fasta scores: FT E(): 3.4e-19, 94.1% id in 51 aa, Pseudomonas aeruginosa FT conserved hypothetical protein PA0567 TR:AAG03956 FT (EMBL:AE004493) (52 aa) fasta scores: E(): 3.1e-09, 64.6% FT id in 48 aa and Arabidopsis thaliana hydrophobic protein FT rci2a or lti6a or f10a16.18 TR:Q9ZNQ7 (EMBL:AF122005) (54 FT aa) fasta scores: E(): 1.1e-05, 54.3% id in 46 aa" FT /db_xref="GOA:Q8XF49" FT /db_xref="InterPro:IPR000612" FT /db_xref="UniProtKB/TrEMBL:Q8XF49" FT /protein_id="CAD05905.1" FT /translation="MGFWRIVFTIILPPLGVLLGKGFGWAFILNILLTLLGYIPGLIHA FT FWVQMRH" FT RBS complement(96759..96762) FT /note="possible RBS" FT CDS 96936..97235 FT /transl_table=11 FT /gene="STY2917" FT /product="putative transcriptional regulator" FT /note="Similar toe.g. Rhizobium leguminosarum bv. viciae FT NolR gene nolR TR:O54057 (EMBL:AJ001934) (105 aa) fasta FT scores: E(): 2.2e-11, 46.3% id in 95 aa, and to Vibrio FT cholerae transcriptional activator HlyU hlyU SW:HLYU_VIBCH FT (P52695) (108 aa) fasta scores: E(): 2.7e-11, 41.1% id in FT 95 aa" FT /note="Orthologue of E. coli P77295; Fasta hit to P77295 FT (99 aa), 88% identity in 99 aa overlap" FT /db_xref="GOA:Q8Z4F5" FT /db_xref="InterPro:IPR001845" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q8Z4F5" FT /protein_id="CAD05906.1" FT /translation="MTELEKLQASAEQAAALLKAMSHPKRLLILCMLCGSPKTSAGELA FT RITGLSPSATSQHLARMREEGLIDSQRDAQRIHYFIKNEAVNTLIATLKNLYCP" FT misc_feature 96987..97223 FT /note="Pfam match to entry PF01022 HTH_5, Bacterial FT regulatory protein, arsR family, score 97.00, E-value FT 3.7e-25" FT RBS 97233..97240 FT /note="possible RBS" FT CDS 97245..97772 FT /transl_table=11 FT /gene="STY2918" FT /product="conserved hypothetical protein" FT /note="Orthologue of E. coli YGAP_ECOLI; Fasta hit to FT YGAP_ECOLI (174 aa), 77% identity in 173 aa overlap" FT /db_xref="InterPro:IPR001763" FT /db_xref="UniProtKB/TrEMBL:Q8Z4F4" FT /protein_id="CAD05907.1" FT /translation="MSIGIVSPREAQALIAQGAKLIDVRDADEYLREHIPHAQLAPLSR FT LEQGDLPANLRAEQIIFHCQSGKRTSSNAAKLQAIAAPAQVSLLEGGIDGWKAAGLPVT FT EDKSQPLPLMRQVQIAAGGLTLLGVILGYTVHGGFFLISGFVGAGLMLAGITGFCGMAR FT LLEKMPWNTRTH" FT misc_feature 97263..97541 FT /note="Pfam match to entry PF00581 Rhodanese, FT Rhodanese-like domain, score 45.00, E-value 1.7e-09" FT CDS 97906..98031 FT /transl_table=11 FT /gene="STY2919" FT /product="hypothetical protein" FT /note="Unknown function. Improbable ORF" FT /db_xref="UniProtKB/TrEMBL:Q8Z4F3" FT /protein_id="CAD05908.1" FT /translation="MIEVNEDHIVAVQVGNEPGEKLILKAADVTPYCEKGDFGVC" FT CDS complement(98121..98522) FT /transl_table=11 FT /gene="STY2920" FT /gene_synonym="stpA" FT /product="DNA-binding protein StpA" FT /note="Identical to Salmonella typhimurium DNA-binding FT protein StpA stpA SW:STPA_SALTY (O33800) (133 aa) fasta FT scores: E(): 0, 100.0% id in 133 aa" FT /note="Fasta hit to HNS_ECOLI (136 aa), 55% identity in 131 FT aa overlap" FT /note="Orthologue of E. coli stpA (STPA_ECOLI); Fasta hit FT to STPA_ECOLI (134 aa), 84% identity in 134 aa overlap" FT /db_xref="GOA:P0A1S5" FT /db_xref="InterPro:IPR001801" FT /db_xref="UniProtKB/Swiss-Prot:P0A1S5" FT /protein_id="CAD05909.1" FT /translation="MNLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEE FT LQQRQLAEKQEKINAFLELMKADGINPEELFAMDSAMPRSAKKRQPRPAKYRFTDFNGE FT EKTWTGQGRTPKPIAQALAAGKSLDDFLI" FT misc_feature complement(98139..98522) FT /note="Pfam match to entry PF00816 Histone_HNS, H-NS FT histone family, score 337.80, E-value 1.2e-97" FT RBS 99208..99213 FT /note="possible RBS" FT CDS 99221..99670 FT /transl_table=11 FT /gene="STY2923" FT /product="putative membrane protein" FT /note="Orthologue of E. coli P76626; Fasta hit to P76626 FT (149 aa), 86% identity in 149 aa overlap. Contains FT hydrophobic, probable membrane-spanning regions" FT /db_xref="InterPro:IPR010574" FT /db_xref="UniProtKB/TrEMBL:Q8Z4F2" FT /protein_id="CAD05910.1" FT /translation="MFSPQSRLRHAVADTFAMVVHCSVVNMLIEIFLSGMSFEQSLSSR FT LVAIPVNILIAWPYGVYRDLIMRVARKASPAGWAKNLADVLAYVTFQSPVYIIILLTVG FT AGWHQIVAAVSSNIVVSMLMGAVYGYFLNYCRRLFKVSSYHQAKA" FT CDS complement(99705..100055) FT /transl_table=11 FT /gene="STY2924" FT /gene_synonym="ygaC" FT /product="conserved hypothetical protein" FT /note="Orthologue of E. coli ygaC (YGAC_ECOLI); Fasta hit FT to YGAC_ECOLI (114 aa), 88% identity in 112 aa overlap" FT /db_xref="InterPro:IPR018994" FT /db_xref="UniProtKB/TrEMBL:Q8Z4F1" FT /protein_id="CAD05911.1" FT /translation="MYLRPDEVARVLEKAGFTVDVVTNKTYGYRRGENYVYVNREARMG FT RTALIIHPRLKDRSSSLADPASDIKTCDHYQNFPLYLGGETHEHYGIPHGFSSRIALER FT YLNGLFGDEKSD" FT RBS complement(100063..100066) FT /note="possible RBS" FT CDS 100217..100543 FT /transl_table=11 FT /gene="STY2925" FT /product="conserved hypothetical protein" FT /note="Fasta hit to YQJD_ECOLI (101 aa), 40% identity in 95 FT aa overlap" FT /note="Fasta hit to ELAB_ECOLI (101 aa), 34% identity in 96 FT aa overlap" FT /note="Orthologue of E. coli YGAM_ECOLI; Fasta hit to FT YGAM_ECOLI (113 aa), 87% identity in 108 aa overlap" FT /db_xref="InterPro:IPR010279" FT /db_xref="UniProtKB/TrEMBL:Q8Z4F0" FT /protein_id="CAD05912.1" FT /translation="MLNKPNRNDVDDGVQDIQNDVNRLADSLEDVLKSWGSDAKDEAEA FT ARRKAQALLKETRARMQGRTRVKQAACDAMGCADTFVREKPWCSVGTAAAVGIFIGALL FT SLRR" FT CDS complement(100627..101961) FT /pseudo FT /transl_table=11 FT /gene="STY2926" FT /product="putative transcriptional regulator (pseudogene)" FT /note="Similar to putative transcriptional regulators e.g. FT Rhizobium meliloti probable rhizopine catabolism regulatory FT protein MocR mocR SW:MOCR_RHIME (P49309) (493 aa) fasta FT scores: E(): 1.2e-29, 35.2% id in 284 aa. Contains a stop FT codon at codon 136" FT misc_feature complement(101764..101943) FT /note="Pfam match to entry PF00392 gntR, Bacterial FT regulatory proteins, gntR family, score 64.60, E-value FT 2.1e-18" FT RBS 102038..102042 FT /note="possible RBS" FT CDS 102050..102481 FT /transl_table=11 FT /gene="STY2928" FT /product="conserved hypothetical protein" FT /note="Similar to proteins from Streptomyces coelicolor and FT acillus subtilis e.g. Streptomyces coelicolor conserved FT hypothetical protein SC5G8.03C TR:CAB89054 (EMBL:AL353872) FT (169 aa) fasta scores: E(): 6.7e-16, 37.6% id in 141 aa and FT Bacillus subtilis YdfG protein ydfG TR:P96684 FT (EMBL:AB001488) (147 aa) fasta scores: E(): 3.8e-15, 33.6% FT id in 137 aa" FT /db_xref="InterPro:IPR003779" FT /db_xref="InterPro:IPR004675" FT /db_xref="UniProtKB/TrEMBL:Q8Z4E9" FT /protein_id="CAD05914.1" FT /translation="MTTLRQPYYELSPEVYSALVQAKNALEKSTIDPTLMELIYLRVSQ FT INGCAFFLEMHSKALRKAGVNQAKLDALAGWRVSHHFNEQECAALAWAESVTHIAETHA FT EDNVYLPLLDHFSAREISDLTFAIGLMNCFNRLAIGMRM" FT CDS 102478..102654 FT /transl_table=11 FT /gene="STY2929" FT /product="hypothetical protein" FT /note="Unknown function" FT /db_xref="UniProtKB/TrEMBL:Q8Z4E8" FT /protein_id="CAD05915.1" FT /translation="MTHCCRIALMSANSVMREPAGRIGRSRRHPAKISHAAPTPLRSSA FT ALKSIENSHILYG" FT CDS 102753..102998 FT /transl_table=11 FT /gene="nrdH" FT /gene_synonym="STY2930" FT /product="putative glutaredoxin" FT /note="Similar to Salmonella typhimurium LT2 FT glutaredoxin-like protein NrdH nrdH SW:NRDH_SALTY (Q56108) FT (81 aa) fasta scores: E(): 5.3e-32, 98.8% id in 81 aa" FT /note="Orthologue of E. coli NRDH_ECOLI; Fasta hit to FT NRDH_ECOLI (81 aa), 84% identity in 81 aa overlap" FT /db_xref="GOA:Q8Z4E7" FT /db_xref="HSSP:1H75" FT /db_xref="InterPro:IPR002109" FT /db_xref="InterPro:IPR011909" FT /db_xref="InterPro:IPR012335" FT /db_xref="InterPro:IPR012336" FT /db_xref="UniProtKB/TrEMBL:Q8Z4E7" FT /protein_id="CAD05916.1" FT /translation="MSITIYTRNNCVQCHATKRAMESRGFEFEMVNVDLVPDAADTLRA FT QGFRQLPVVMAGDLSWSGFRPDMINRLPPTPHAANA" FT CDS 102995..103405 FT /transl_table=11 FT /gene="nrdI" FT /gene_synonym="STY2931" FT /product="NrdI protein" FT /note="Similar to Salmonella typhimurium LT2 NrdI protein FT nrdI SW:NRDI_SALTY (Q56109) (136 aa) fasta scores: E(): 0, FT 99.3% id in 136 aa" FT /note="Orthologue of E. coli NRDI_ECOLI; Fasta hit to FT NRDI_ECOLI (136 aa), 85% identity in 136 aa overlap" FT /db_xref="InterPro:IPR004465" FT /db_xref="InterPro:IPR020852" FT /db_xref="UniProtKB/Swiss-Prot:Q8Z4E6" FT /protein_id="CAD05917.1" FT /translation="MSALVYFSSSSENTHRFMQRLGLPATRIPLNERERIQVDEPYILV FT VPSYGGGGMAGAVPRQVIRFLNDEHNRARIRGVIASGNRNFGDAWGCAGDVIAQKCGVP FT WLYRFELMGTQRDIDNVRKGVNEFWQQSPRSA" FT CDS 103378..105522 FT /transl_table=11 FT /gene="STY2932" FT /gene_synonym="nrdE" FT /product="ribonucleoside-diphosphate reductase 2 alpha FT chain" FT /EC_number="1.17.4.1" FT /note="Similar to Salmonella typhimurium LT2 FT ribonucleoside-diphosphate reductase 2 alpha chain nrdE FT SW:RIR3_SALTY (Q08698) (713 aa) fasta scores: E(): 0, 98.9% FT id in 713 aa" FT /note="Orthologue of E. coli nrdE (RIR3_ECOLI); Fasta hit FT to RIR3_ECOLI (713 aa), 89% identity in 713 aa overlap" FT /db_xref="GOA:Q8Z4E5" FT /db_xref="InterPro:IPR000788" FT /db_xref="InterPro:IPR008926" FT /db_xref="InterPro:IPR013346" FT /db_xref="InterPro:IPR013509" FT /db_xref="InterPro:IPR013554" FT /db_xref="UniProtKB/TrEMBL:Q8Z4E5" FT /protein_id="CAD05918.1" FT /translation="MATITPERVMQETMDYHALNAMLNLYDKAGHIQFDKDQQAIDAFF FT AAHVRPHSVKFASQHERLETLVREGYYDDAVLARYDRAFVFRLFEHAHASGFRFQTFLG FT AWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGDETLATQLTDEMLSGRFQPATPT FT FLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIK FT RIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKI FT RIKTLSLGVVIPDITFRLAKENAQMALFSPYDIQRRYGKPFGDIAISERYDELIADPHV FT RKTYINARDFFQTLAEIQFESGYLYIMFEDTVNRANPIAGRINMSNLCSEILQVNSASR FT YDDNLDYTHIGHDISCNLGSLNIAHVMDSPDIGRTVETAIRGLTAVSDMSHIRSVPSIA FT AGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNFYFYTITWHAVHTSMRLARERG FT KTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMWLKLRDDVMRY FT GIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPAPFMTNENLDMY FT QDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKSLYYI FT RLRQLALESTEIEGCVSCAL" FT RBS 103395..103398 FT /note="possible RBS" FT misc_feature 103645..105456 FT /note="Pfam match to entry PF00317 ribonucleo_red, FT Ribonucleotide reductase, score 984.80, E-value 0" FT misc_feature 105073..105141 FT /note="PS00089 Ribonucleotide reductase large subunit FT signature" FT RBS 105520..105525 FT /note="possible RBS" FT CDS 105533..106492 FT /transl_table=11 FT /gene="STY2933" FT /gene_synonym="nrdF" FT /product="ribonucleoside-diphosphate reductase 2 beta FT chain" FT /EC_number="1.17.4.1" FT /note="Similar to Salmonella typhimurium LT2 FT ribonucleoside-diphosphate reductase 2 beta chain nrdF FT SW:RIR4_SALTY (P17424) (319 aa) fasta scores: E(): 0, 99.4% FT id in 319 aa" FT /note="Orthologue of E. coli nrdF (RIR4_ECOLI); Fasta hit FT to RIR4_ECOLI (319 aa), 88% identity in 319 aa overlap" FT /db_xref="GOA:Q8Z4E4" FT /db_xref="HSSP:2R2F" FT /db_xref="InterPro:IPR000358" FT /db_xref="InterPro:IPR009078" FT /db_xref="InterPro:IPR012348" FT /db_xref="UniProtKB/TrEMBL:Q8Z4E4" FT /protein_id="CAD05919.1" FT /translation="MKLSRISAINWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAW FT QTLSAAEQQLTIRVFTGLTLLDTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARS FT YSSIFSTLCQTKEVDAAYAWSEENPPLQRKAQIILAHYVSDEPLKKKIASVFLESFLFY FT SGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKHQIALQKLSAIEREELKLFA FT LDLLMELYDNEICYTEALYAETGWVNDVKAFLCYNANKALMNLGYEALFPPEMADVNPA FT ILAALSPNADENHDFFSGSGSSYVMGKTVETEDEDWNF" FT misc_feature 105623..106444 FT /note="Pfam match to entry PF00268 ribonuc_red, FT Ribonucleotide reductases, score 400.00, E-value 9.3e-137" FT misc_feature 105821..105871 FT /note="PS00368 Ribonucleotide reductase small subunit FT signature" FT CDS 106847..108048 FT /pseudo FT /transl_table=11 FT /gene="proV" FT /gene_synonym="STY2934" FT /product="glycine betaine/L-proline transport ATP-binding FT protein (pseudogene)" FT /note="Similar to Escherichia coli glycine FT betaine/L-proline transport ATP-binding protein ProV proV FT SW:PROV_ECOLI (P14175) (400 aa) fasta scores: E(): 0, 97.2% FT id in 144 aa. Similar to Salmonella typhimurium glycine FT betaine/L-proline transport ATP-binding protein ProV proV FT SW:PROV_SALTY (P17328) (400 aa) fasta scores: E(): 0, FT 100.0% id in 144 aa. Contains a frameshift at codon 187. FT The sequence has been checked and is believed to be FT correct" FT misc_feature 107027..107050 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)" FT misc_feature 107338..107382 FT /note="PS00211 ABC transporters family signature" FT misc_feature 107866..108024 FT /note="Pfam match to entry PF00571 CBS, CBS domain, score FT 43.00, E-value 6.6e-09" FT CDS 108041..109105 FT /transl_table=11 FT /gene="STY2936" FT /gene_synonym="proW" FT /product="glycine betaine/L-proline transport system FT permease protein P" FT /note="Orthologue of E. coli proW (PROW_ECOLI); Fasta hit FT to PROW_ECOLI (354 aa), 91% identity in 354 aa overlap" FT /db_xref="GOA:Q8Z4E3" FT /db_xref="InterPro:IPR000515" FT /db_xref="UniProtKB/TrEMBL:Q8Z4E3" FT /protein_id="CAD05921.1" FT /translation="MADQTNPWDTAQVADTTTQTADAWGTPAGVATDGGSTDWLNSAPA FT PAPEHFSLLDPFHKTLIPLDSWVTEGIDWVVTHFRPLFQGIRVPVDYILNGFQQLLLGM FT PAPVAIILFALIAWQVSGVGMGIAALISLIAIGAIGAWSQAMITLALVLTALLFCVVIG FT LPMGIWLARSPRAAKIVRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFALPPI FT IRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLALSMVVI FT ASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIILDRLTQAVGRDSRSRGNRRWY FT TTGPVGLITRPFVK" FT misc_feature 108725..108937 FT /note="Pfam match to entry PF00528 BPD_transp, FT Binding-protein-dependent transport systems inner membrane FT component, score 65.60, E-value 1.1e-15" FT misc_feature 108728..108814 FT /note="PS00402 Binding-protein-dependent transport systems FT inner membrane comp sign." FT RBS 109164..109168 FT /note="possible RBS" FT CDS 109175..110170 FT /transl_table=11 FT /gene="STY2937" FT /gene_synonym="proX" FT /product="glycine betaine-binding periplasmic protein FT precursor" FT /note="Orthologue of E. coli proX (PROX_ECOLI); Fasta hit FT to PROX_ECOLI (330 aa), 83% identity in 331 aa overlap" FT /db_xref="GOA:Q8Z4E2" FT /db_xref="InterPro:IPR007210" FT /db_xref="UniProtKB/TrEMBL:Q8Z4E2" FT /protein_id="CAD05922.1" FT /translation="MRHTVIFASAFATLVTASAFAADLPGKGITVQPIQSTISEESFQT FT LLVSRALEKLGYTVNKPSEVDYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDKKFY FT REGVFVSGAAQGYLIDKKTAEQYNITNIAQLKDPKIAKIFDTNGDGKADMMGCSPGWGC FT EAVINHQNKAFDLQKTVEVSHGNYAAMMADTITRFKEGKPVLYYTWTPYWVSDVMKPGK FT DVVWLQVPFSSLPGEQKNIDTKLPNGANYGFPVNTMHIVANKAWAEKNPAAAKLFAIMK FT LPLADINAQNAMMHAGKSSEADVQGHVDGWINAHQQQFDGWVKEALAAQK" FT misc_feature 110048..110071 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)" FT CDS 110335..111519 FT /transl_table=11 FT /gene="STY2938" FT /product="putative transmembrane transport protein" FT /note="Similar to Bacillus subtilis YdeR protein ydeR FT TR:P96675 (EMBL:AB001488) (395 aa) fasta scores: E(): 0, FT 39.3% id in 379 aa and to many transport proteins e.g. FT Erwinia chrysanthemi sugar efflux transpoter sotB TR:Q9S3J9 FT (EMBL:AJ249181) (395 aa) fasta scores: E(): 5.3e-14, 24.9% FT id in 382 aa. Contains hydrophobic, probable FT membrane-spannign regions" FT /db_xref="GOA:Q8Z4E1" FT /db_xref="InterPro:IPR011701" FT /db_xref="InterPro:IPR016196" FT /db_xref="UniProtKB/TrEMBL:Q8Z4E1" FT /protein_id="CAD05923.1" FT /translation="MTKPTHGLSPALIVLMSVATGLAVASNYYAQPLLDTIAHHFSLSA FT SSAGFIVTAAQLGYAAGLLFLVPLGDMFERRTLIVSMTLLAAGGMLITASSQSLSMMIL FT GTALTGLFSVVAQILVPLAATLATPATRGKVVGTIMSGLLLGILLARTVAGLLANLGGW FT RTVFWVASALMALMAVALWRGLPKLKSDTHLNYPQLLGSVFSLFIHDKLLRTRALLGCL FT TFANFSILWTSMAFLLAAPPFSYSEGMIGLFGLAGAAGALGARPAGGFADKGKSHLTTT FT FGLLLLLLSWLAIWLGRTSVLALIIGILVLDLTVQGVHITNQTVIYRLHPDARNRLTAG FT YMTSYFIGGAAGSLISASAWQHAGWAGVCLAGVTVALLNLLVWWRGFHRQEAVN" FT misc_feature 110371..111516 FT /note="Pfam match to entry PF00083 sugar_tr, Sugar (and FT other) transporter, score -103.00, E-value 0.0034" FT misc_feature 111139..111162 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)" FT RBS 112002..112006 FT /note="possible RBS" FT CDS 112016..112546 FT /transl_table=11 FT /gene="STY2939" FT /gene_synonym="emrR" FT /gene_synonym="mprA" FT /product="putative transcriptional regulator" FT /note="Orthologue of E. coli emrR (MPRA_ECOLI); Fasta hit FT to MPRA_ECOLI (176 aa), 93% identity in 175 aa overlap" FT /db_xref="GOA:Q8XGH5" FT /db_xref="InterPro:IPR000835" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q8XGH5" FT /protein_id="CAD05924.1" FT /translation="MDSSFTPIEQMLKFRASRHEDFPYQEILLTRLCMHMQGKLLENRN FT KMLKAQGINETLFMALITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIERR FT ESDNDRRCLHLQLTEKGQAFLQEVLPPQHHCLHQLWSSLSTAEKDQLEHITRKLLTRLD FT QMEQEGTVLEALR" FT misc_feature 112172..112489 FT /note="Pfam match to entry PF01047 MarR, MarR family, score FT 143.80, E-value 3e-39" FT misc_feature 112274..112378 FT /note="PS01117 Bacterial regulatory proteins, marR family FT signature" FT RBS 112663..112666 FT /note="possible RBS" FT CDS 112673..113845 FT /transl_table=11 FT /gene="STY2940" FT /gene_synonym="emrA" FT /product="multidrug resistance protein A" FT /note="Fasta hit to EMRK_ECOLI (387 aa), 50% identity in FT 377 aa overlap" FT /note="Orthologue of E. coli emrA (EMRA_ECOLI); Fasta hit FT to EMRA_ECOLI (390 aa), 90% identity in 390 aa overlap" FT /db_xref="GOA:Q8Z4E0" FT /db_xref="InterPro:IPR005694" FT /db_xref="InterPro:IPR006143" FT /db_xref="UniProtKB/TrEMBL:Q8Z4E0" FT /protein_id="CAD05925.1" FT /translation="MSANAEIQPPQQPAKKKGKRKTALLLLTLLFVIIAVAYGIYWFLV FT LRHIEETDDAYVAGNQVQIMAQVSGSVTKVWADNTDFVKEGDVLVTLDQTDAKQAFERA FT KTALASSVRQTHQLMINSKQLQANIDVQKTALAQAQSDLNRRVPLGNANLIGREELQHA FT RDAVASAQAQLDVAIQQYNANQAMILNSNLEDQPAVQQAATEVRNAWLALERTRIVSPM FT TGYVSRRAVQPGAQISPTTPLMAVVPATDLWVDANFKETQLANMRIGQPVTIITDIYGD FT DVKYTGKVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRVELDARQLEQHPLRIGLS FT TLVTVDTANRDGQVLASQVRTTPVAESNAREINLAPVNKLIDDIVQANAG" FT misc_feature 112850..113701 FT /note="Pfam match to entry PF00529 HlyD, HlyD family FT secretion protein, score 279.70, E-value 3.7e-80" FT RBS 113850..113855 FT /note="possible RBS" FT CDS 113862..115400 FT /transl_table=11 FT /gene="STY2941" FT /gene_synonym="emrB" FT /product="multidrug resistance protein B" FT /note="Fasta hit to YIEO_ECOLI (475 aa), 33% identity in FT 424 aa overlap" FT /note="Fasta hit to EMRY_ECOLI (512 aa), 63% identity in FT 506 aa overlap" FT /note="Orthologue of E. coli emrB (EMRB_ECOLI); Fasta hit FT to EMRB_ECOLI (512 aa), 96% identity in 512 aa overlap" FT /db_xref="GOA:Q8Z4D9" FT /db_xref="InterPro:IPR004638" FT /db_xref="InterPro:IPR011701" FT /db_xref="InterPro:IPR016196" FT /db_xref="UniProtKB/TrEMBL:Q8Z4D9" FT /protein_id="CAD05926.1" FT /translation="MQQQKPLEGAQLIIMTIALSLATFMQVLDSTIANVAIPTIAGNLG FT SSLSQGTWVITSFGVANAISIPLTGWLAKRFGEVKLFMWSTVAFAAASWACGVSSSLNM FT LIFFRVVQGVVAGPLIPLSQSLLLNNYPPAKRSIALALWSMTVIVAPICGPILGGYISD FT NYHWGWIFFINVPIGIAVVLMTLHTLRGRETHTERRRIDAVGLALLVIGISSLQIMLDR FT GKELDWFSSQEIIILTVVAVIAISFLIVWELTDDHPIVDLSLFKSRNFTIGCLCISLAY FT MLYFGAIVLLPQLLQEVYGYTATWAGLASAPVGIIPVILSPIIGRFAHKLDMRRLVTFS FT FIMYAVCFYWRAWTFEPGMDFGASAWPQFIQGFAVACFFMPLTTITLSGLPPERLAAAS FT SLSNFTRTLAGSIGTSITTTMWTDRESLHHAQLTESVTAYNPNAQAMYDKLEGLGMTHQ FT QASGWIAQQITNQGLIISANEIFWMSAGIFLVLLGLVWFAKPPFGAGGGGGGAH" FT CDS complement(115449..116819) FT /transl_table=11 FT /gene="STY2942" FT /product="putative glycoporin" FT /note="Similar to Escherichia coli putative glycoporin rafY FT from plasmid pRSD2 TR:P77076 (EMBL:U82290) (464 aa) fasta FT scores: E(): 0, 59.0% id in 458 aa. There is experimental FT evidence for this function. Contains a probable N-terminal FT signal sequence" FT /db_xref="InterPro:IPR016963" FT /db_xref="UniProtKB/TrEMBL:Q8Z4D8" FT /protein_id="CAD05927.1" FT /translation="MKAKYLALMIGACFSHNLWAANDITIEQRLAELEQRVVNAEKRAS FT DAEAQIRSLKQQQVAATPTVNVQSAEPIAADKTPPKLTLSGFSDIKFYGDVEFNMDAAS FT RSGSLTSMRTSANKDWASGTNERWDINGRLLLGFDGYQRLDNGNFAGFSVQPLADLTGK FT MNLDDAVFFFGRENDWKIKVGRFEAYDMFPLNQDTFIEYSGNTANDLYSDGYGYIYMMK FT EGRGRSDSGGNFLLSKTIDNWYFEVNTLLENGSTLYTEKQYHGMDLTNDKNVAYVRPVI FT AWQNGRFSTAIAMESNVVNNAYGYYENGKWIDQSDRTGYGFTMTWNGQKTDPEDGAVIN FT LNTAYMDATDETDFTAGVNALWHRFELGYIYAHNKIEAFNATNIDAVCEDDCWITDPGN FT YDIHTIHASYLFPNVMDMKNFNIYLGAYASWVEANPNNGDNSEDARYGGRLRFKYFF" FT CDS complement(117165..117680) FT /transl_table=11 FT /gene="luxS" FT /gene_synonym="STY2943" FT /product="autoinducer-2 production protein LuxS" FT /note="Similar to Escherichia coli autoinducer-2 production FT protein LuxS SW:LUXS_ECOLI (P45578) (170 aa) fasta scores: FT E(): 0, 93.5% id in 170 aa and Salmonella typhimurium LuxS FT protein luxS TR:AAF73475 (EMBL:) (171 aa) fasta scores: FT E(): 0, 99.4% id in 171 aa" FT /db_xref="GOA:Q8Z4D7" FT /db_xref="InterPro:IPR003815" FT /db_xref="InterPro:IPR011249" FT /db_xref="UniProtKB/Swiss-Prot:Q8Z4D7" FT /protein_id="CAD05928.1" FT /translation="MPLLDSFAVDHTRMQAPAVRGAKTMNTPHGDAITVFDLRFCIPNK FT EVMPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISPMGCRTGFYMSLIGTPDEQRVADAW FT KAAMADVLKVQDQNQIPELNVYQCGTYQMHSLSEAQDIARHILERDVRVNSNKELALPK FT EKLQELHI" FT RBS complement(117686..117692) FT /note="possible RBS" FT CDS complement(117830..119386) FT /transl_table=11 FT /gene="STY2944" FT /gene_synonym="gshA" FT /product="gamma-glutamylcysteine synthetase" FT /EC_number="6.3.2.2" FT /note="Similar to Salmonella typhimurium LT2 FT glutamate--cysteine ligase SW:GSH1_SALTY (O68838) (518 aa) FT fasta scores: E(): 0, 98.6% id in 518 aa" FT /note="Orthologue of E. coli gshA (GSH1_ECOLI); Fasta hit FT to GSH1_ECOLI (518 aa), 93% identity in 518 aa overlap" FT /db_xref="GOA:Q8Z4D6" FT /db_xref="InterPro:IPR006334" FT /db_xref="InterPro:IPR007370" FT /db_xref="UniProtKB/Swiss-Prot:Q8Z4D6" FT /protein_id="CAD05929.1" FT /translation="MIPDVSQALAWLEKHPQALKGIQRGLERETLRVNADGTLATTVHP FT EALGSALTHKWITTDFAEALLEFITPVDGDIQHMLTFMRDLHRYTARKLGDERMWPLSM FT PCYIAEGQDIELAQYGTSNTGRFKTLYREGLKNRYGALMQTISGVHYNFSLPMAFWQAK FT CGVTEGEAAKEKISAGYFRLIRNYYRFGWVIPYLFGASPAICSSFLQGKPTTLPFEKTD FT CGMYYLPYATSLRLSDLGYTNKSQSNLGITFNDLHEYVAGLKRAIKTPSEEYARIGVEK FT DGKRLQINSNVLQIENELYAPIRPKRVTRSGESPSDALLRGGIEYIEVRSLDINPFSPI FT GVDEQQVRFLDLFMVWCVLADAPEMSSDELLCTRTNWNRVILEGRKPGLTLGIGCETAQ FT FPLPKVGKDLFRDLKRVAQTLDSIHGGEEYQKVCDELVACFDNPELTFSARILRSMIDE FT GIGGTGKAFGEAYRNLLREEPLEILQEEEFIAERDASVRRQQEIEAADTEPFAAWLAKH FT A" FT RBS complement(119391..119396) FT /note="possible RBS" FT CDS complement(119463..119888) FT /transl_table=11 FT /gene="STY2945" FT /product="putative membrane protein" FT /note="Similar to e.g. Haemophilus influenzae hypothetical FT protein HI0489 SW:YQAA_HAEIN (P44005) (157 aa) fasta FT scores: E(): 4.5e-18, 46.6% id in 133 aa, Neisseria FT meningitidis hypothetical protein NMB0534 TR:AAF40963 FT (EMBL:UNNKOWN ACCESSION) (137 aa) fasta scores: E(): FT 4.8e-12, 36.9% id in 130 aa and Neisseria meningitidis FT putative membrane protein NMA0712 TR:CAB83998 (EMBL:UNNKOWN FT ACCESSION) (137 aa) fasta scores: E(): 6.6e-12, 36.9% id in FT 130 aa. Contains hydrophobic, probable membrane-spanning FT regions" FT /note="Orthologue of E. coli YQAA_ECOLI; Fasta hit to FT YQAA_ECOLI (142 aa), 91% identity in 141 aa overlap" FT /db_xref="InterPro:IPR020143" FT /db_xref="UniProtKB/TrEMBL:Q8XGM5" FT /protein_id="CAD05930.1" FT /translation="MSDGLSLLSLFASSFLSATLLPGNSEVVLVAMLVSGVSHPWVLVL FT TATMGNSLGGVTNVILGRFFPLRKTSRWQEKATGWLKRYGAATLLLSWMPVIGDLLCLL FT AGWMRIPWGRTIFFLCLGKALRYVALAAATVQGMMWW" FT CDS complement(119885..120451) FT /transl_table=11 FT /gene="STY2946" FT /product="conserved hypothetical protein" FT /note="Similar to e.g. Haemophilus influenzae hypothetical FT protein HI0488 SW:YQAB_HAEIN (P44004) (200 aa) fasta FT scores: E(): 3.1e-28, 40.6% id in 187 aa and Neisseria FT meningitidis beta-phosphoglucomutase pgm2 or NMA2093 FT TR:CAB85309 (EMBL:UNNKOWN ACCESSION) (221 aa) fasta scores: FT E(): 2.4e-13, 31.8% id in 192 aa" FT /note="Fasta hit to PGMB_ECOLI (219 aa), 30% identity in FT 189 aa overlap" FT /note="Fasta hit to YNIC_ECOLI (222 aa), 30% identity in FT 184 aa overlap" FT /note="Orthologue of E. coli YQAB_ECOLI; Fasta hit to FT YQAB_ECOLI (188 aa), 88% identity in 188 aa overlap" FT /db_xref="GOA:Q8XFD9" FT /db_xref="InterPro:IPR005833" FT /db_xref="InterPro:IPR005834" FT /db_xref="InterPro:IPR006402" FT /db_xref="InterPro:IPR010976" FT /db_xref="UniProtKB/TrEMBL:Q8XFD9" FT /protein_id="CAD05931.1" FT /translation="MYARYAGLIFDMDGTLLDTEPTHRKAWREVLGRYGLRFDEQAMVA FT LNGSPTWLIAQSIIELNHADLDPLSLAREKTDAVKSILLDCVEPLPLVEVVKAWHGRRP FT MSVGTGSESAIAEALLAHLGLRRYFDAVVAADHVQHHKPAPDTFLLCAQRMGVMPTQCV FT VFEDADFGLQAARAAGMDAVDVRLL" FT misc_feature complement(119888..120439) FT /note="Pfam match to entry PF00702 Hydrolase, haloacid FT dehalogenase-like hydrolase, score 163.10, E-value 4.8e-45" FT tRNA complement(120822..120898) FT /note="tRNA Arg anticodon ACG, Cove score 87.22" FT tRNA complement(121095..121171) FT /note="tRNA Arg anticodon ACG, Cove score 87.22" FT tRNA complement(121234..121310) FT /note="tRNA Arg anticodon ACG, Cove score 87.22" FT tRNA complement(121373..121450) FT /note="tRNA Arg anticodon ACG, Cove score 76.67" FT tRNA complement(121454..121546) FT /note="tRNA Ser anticodon GCT, Cove score 72.46" FT CDS complement(121850..122035) FT /transl_table=11 FT /gene="csrA" FT /gene_synonym="STY2947" FT /product="carbon storage regulator" FT /note="Identical to Escherichia coli post-transcriptional FT carbon storage regulator CsrA SW:CSRA_ECOLI (P31803) (61 FT aa) fasta scores: E(): 9.3e-24, 100.0% id in 61 aa, and FT similar to Erwinia carotovora global regulatory protein FT RsmA TR:Q9XB50 (EMBL:L40173) (61 aa) fasta scores: E(): FT 7e-23, 96.7% id in 61 aa" FT /note="Orthologue of E. coli csrA (CSRA_ECOLI); Fasta hit FT to CSRA_ECOLI (61 aa), 100% identity in 61 aa overlap" FT /db_xref="GOA:P69916" FT /db_xref="InterPro:IPR003751" FT /db_xref="UniProtKB/Swiss-Prot:P69916" FT /protein_id="CAD05932.1" FT /translation="MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHRE FT EIYQRIQAEKSQQSSY" FT RBS complement(122043..122047) FT /note="possible RBS" FT CDS complement(122270..124900) FT /transl_table=11 FT /gene="STY2948" FT /gene_synonym="alaS" FT /product="alanyl-tRNA synthetase" FT /EC_number="6.1.1.7" FT /note="Orthologue of E. coli alaS (SYA_ECOLI); Fasta hit to FT SYA_ECOLI (876 aa), 95% identity in 876 aa overlap" FT /db_xref="GOA:Q8Z4D5" FT /db_xref="InterPro:IPR002318" FT /db_xref="InterPro:IPR003156" FT /db_xref="InterPro:IPR012947" FT /db_xref="InterPro:IPR018162" FT /db_xref="InterPro:IPR018163" FT /db_xref="InterPro:IPR018164" FT /db_xref="InterPro:IPR018165" FT /db_xref="UniProtKB/Swiss-Prot:Q8Z4D5" FT /protein_id="CAD05933.1" FT /translation="MSKSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGMN FT QFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFK FT HDAIQFAWELLTGENWFALPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDNKGA FT PYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQ FT ADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIEAVAKVTGSTDLGNKSL FT RVIADHIRSCAFLVADGVLPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIE FT VMGSAGEELKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLQGDTLDGETAFRLY FT DTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREASGFGADYNAMIRVDSASEF FT KGYDHLELNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGDKGELKGAGF FT TFAVDDTQKYGQAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSATHLMHAALRQ FT VLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNLPIETNIMDLDA FT AKAKGAMALFGEKYDERVRVLSMGDFSTELCGGTHASRTGDIGLFRIISESGTAAGIRR FT IEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTRQLEKELQQLKDQA FT AAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLGSTVIVLATVVEGKV FT SLIAGVSKDVTDRVKAGELIGMVAQQVGGKGGGRPDMAQAGGTDAAALPAALASVQGWV FT SAKLQ" FT misc_feature complement(122294..122506) FT /note="Pfam match to entry PF02272 DHHA1, DHHA1 domain, FT score 78.50, E-value 1.4e-19" FT misc_feature complement(122786..124882) FT /note="Pfam match to entry PF01411 tRNA-synt_2c, tRNA FT synthetases class II (A), score 1619.30, E-value 0" FT misc_feature complement(124160..124189) FT /note="PS00339 Aminoacyl-transfer RNA synthetases class-II FT signature 2" FT CDS complement(125136..125636) FT /transl_table=11 FT /gene="STY2949" FT /gene_synonym="oraA" FT /gene_synonym="recX" FT /product="putative regulatory protein RecX" FT /note="Orthologue of E. coli oraA (RECX_ECOLI); Fasta hit FT to RECX_ECOLI (166 aa), 88% identity in 166 aa overlap" FT /db_xref="GOA:Q8Z4D4" FT /db_xref="InterPro:IPR003783" FT /db_xref="UniProtKB/Swiss-Prot:Q8Z4D4" FT /protein_id="CAD05934.1" FT /translation="MSEPTSRRPAYARLLDRAVRILAVRDHSEQELRRKLSAPVMGKNG FT PEEIDATADDYERVIAWCHEHHYLDDERFVMRFIASRSRKGYGPARIRQELNQKGISRE FT STEKAMRECEIDWSEMAREQAVRKYGEPLPSNFSEKVKVQRFLLYRGYLMDDIQQIWRN FT FAD" FT CDS complement(125753..126814) FT /transl_table=11 FT /gene="STY2950" FT /gene_synonym="recA" FT /product="RecA protein" FT /note="Orthologue of E. coli recA (RECA_ECOLI); Fasta hit FT to RECA_ECOLI (352 aa), 97% identity in 352 aa overlap" FT /db_xref="GOA:P65978" FT /db_xref="InterPro:IPR001553" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR013765" FT /db_xref="InterPro:IPR020584" FT /db_xref="InterPro:IPR020587" FT /db_xref="InterPro:IPR020588" FT /db_xref="UniProtKB/Swiss-Prot:P65978" FT /protein_id="CAD05935.1" FT /translation="MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGS FT LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPVY FT ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDS FT HMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASV FT RLDIRRIGAVKEGDNVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVK FT EKLIEKAGAWYSYNGEKIGQGKANATTWLKENPATAKEIEKRVRELLLSNQNATPDFAV FT DDSEGVAETNEDF" FT misc_feature complement(125825..126790) FT /note="Pfam match to entry PF00154 recA, recA bacterial DNA FT recombination proteins, score 812.40, E-value 1.6e-240" FT misc_feature complement(126146..126172) FT /note="PS00321 recA signature" FT misc_feature complement(126545..126568) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)" FT misc_feature complement(126593..126616) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)" FT RBS complement(126820..126824) FT /note="possible RBS" FT CDS complement(126899..127396) FT /transl_table=11 FT /gene="STY2951" FT /gene_synonym="ygaD" FT /product="conserved hypothetical protein" FT /note="Fasta hit to YDEJ_ECOLI (172 aa), 39% identity in FT 163 aa overlap" FT /note="Orthologue of E. coli ygaD (YGAD_ECOLI); Fasta hit FT to YGAD_ECOLI (165 aa), 92% identity in 165 aa overlap" FT /db_xref="InterPro:IPR008136" FT /db_xref="UniProtKB/TrEMBL:Q8Z4D3" FT /protein_id="CAD05936.1" FT /translation="MTDSELMRLSEQVGLALKARGATVTTAESCTGGWLAKAITDIAGS FT SAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSESVVVEMAIGALKAARADFAVAISG FT IAGPDGGSEEKPVGTVWFAFASVSGEGITRRECFSGDRESVRRQATTYALQTLWQQFLQ FT NT" FT RBS complement(127401..127405) FT /note="possible RBS" FT CDS complement(127862..128941) FT /transl_table=11 FT /gene="STY2952" FT /gene_synonym="mltB" FT /product="membrane-bound lytic transglycosylase B FT precursor" FT /EC_number="3.2.1.-" FT /note="Orthologue of E. coli mltB (MLTB_ECOLI); Fasta hit FT to MLTB_ECOLI (361 aa), 92% identity in 361 aa overlap" FT /db_xref="GOA:Q8XG33" FT /db_xref="HSSP:1LTM" FT /db_xref="InterPro:IPR011757" FT /db_xref="UniProtKB/TrEMBL:Q8XG33" FT /protein_id="CAD05937.1" FT /translation="MFKRRYVALLPLCVLLAACSSTPKSSETQATTGTPSGGFLLEPQH FT NVMQMGGDFANNPNAQQFIDKMVSKHGFDRQQLQEILSQSKRLDYVLRLMDRQAPTTQP FT PAGPNGAWLRYRKQFITPDNVQNGVAFWNQYEDALNRAWQVYGVPPEIIVGIIGVETRW FT GRIMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFAGAMGYG FT QFMPSSYKEYAVDFNGDGHINLWDPVDAIGSVANYFKAHGWVKGDMVAVPASGQAPGLA FT NGFKTKYSISQLAAAGLTPQQSLGNHQEASLLRLDIGTGYQYWYGLPNFYTITRYNHST FT HYAMAVWQLGQAVALARVR" FT misc_feature complement(128885..128917) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site" FT RBS 129185..129189 FT /note="possible RBS" FT CDS 129196..129759 FT /transl_table=11 FT /gene="STY2953" FT /gene_synonym="srlA" FT /product="PTS system, glucitol/sorbitol-specific IIBC FT component" FT /note="Orthologue of E. coli srlA (PTHC_ECOLI); Fasta hit FT to PTHC_ECOLI (187 aa), 97% identity in 187 aa overlap" FT /db_xref="GOA:Q8Z4D2" FT /db_xref="InterPro:IPR004699" FT /db_xref="UniProtKB/TrEMBL:Q8Z4D2" FT /protein_id="CAD05938.1" FT /translation="MIETITHGAEWFIGLFQKGGEVFTGMVTGILPLLISLLVIMNALI FT NFIGQQRIERFAQRCAGNPLSRYLLLPFIGTFVFCNPMTLSLGRFMPEKYKPSYYAAAS FT YSCHSMNGLFPHINPGELFVYLGIASGLTTLGLPLGPLAVSYLLVGLVTNFFRGWVTDL FT TTAIFEKKMGIQLEQKVHLTGAVS" FT RBS 129744..129748 FT /note="possible RBS" FT CDS 129756..130727 FT /transl_table=11 FT /gene="STY2954" FT /gene_synonym="srlE" FT /product="PTS system, glucitol/sorbitol-specific IIBC FT component" FT /EC_number="2.7.1.69" FT /note="Orthologue of E. coli srlE (PTHB_ECOLI); Fasta hit FT to PTHB_ECOLI (319 aa), 93% identity in 323 aa overlap" FT /db_xref="GOA:Q8Z4D1" FT /db_xref="InterPro:IPR004702" FT /db_xref="InterPro:IPR011618" FT /db_xref="InterPro:IPR011638" FT /db_xref="UniProtKB/TrEMBL:Q8Z4D1" FT /protein_id="CAD05939.1" FT /translation="MTRVRIEKGAGGWGGPLELDVTPGKKIVYITAGTRPAIVDKLAQL FT TGWQAVDGFKEGEPPEAEIGAAIIDCGGTLRCGIYPKRRIPTINIHSTGKSGPLAQYIV FT EDIYVSGVKEENITLVGETSARPQPAKTTLGRDYDTSKKITEQSDGLLAKVGMGMGSAV FT AVLFQSGRDTIDTVLKTILPFMAFVSALIGIIMASGLGDWIAHGLAPLASHPLGLVTLA FT LICSFPLLSPFLGPGAVIAQVIGVLIGVQIGLGNIPPHLALPALFAINAQAACDFIPVG FT LSLAEAKQDTVRVGVPSVLVGRFLTGAPTVLIAWFVSGFIYQ" FT misc_feature 130218..130292 FT /note="PS00107 Protein kinases ATP-binding region FT signature" FT RBS 130728..130732 FT /note="possible RBS" FT CDS 130739..131101 FT /transl_table=11 FT /gene="STY2955" FT /gene_synonym="srlB" FT /product="PTS system, glucitol/sorbitol-specific IIA FT component" FT /EC_number="2.7.1.69" FT /note="Orthologue of E. coli srlB (PTHA_ECOLI); Fasta hit FT to PTHA_ECOLI (123 aa), 81% identity in 118 aa overlap" FT /db_xref="GOA:Q8Z4D0" FT /db_xref="InterPro:IPR004716" FT /db_xref="UniProtKB/TrEMBL:Q8Z4D0" FT /protein_id="CAD05940.1" FT /translation="MSVIYQTTITRIGQSAMEALGEKMLITFREGAPADIEEFCFIHCH FT GELTGALQPGARCELGQHCYPVTAVGSVAEQNLRELGHITLRFDGLREAEFPGTVHVAG FT PVPDDIAPGCILTFVA" FT RBS 131099..131105 FT /note="possible RBS" FT CDS 131113..131892 FT /transl_table=11 FT /gene="STY2956" FT /gene_synonym="srlD" FT /gene_synonym="gutD" FT /product="sorbitol-6-phosphate 2-dehydrogenase FT (glucitol-6-phosphate dehydrogenase)" FT /EC_number="1.1.1.140" FT /note="Fasta hit to YGFF_ECOLI (247 aa), 30% identity in FT 257 aa overlap" FT /note="Fasta hit to HDHA_ECOLI (255 aa), 31% identity in FT 255 aa overlap" FT /note="Orthologue of E. coli srlD (SRLD_ECOLI); Fasta hit FT to SRLD_ECOLI (259 aa), 97% identity in 259 aa overlap" FT /db_xref="GOA:Q8Z4C9" FT /db_xref="HSSP:1NFF" FT /db_xref="InterPro:IPR002198" FT /db_xref="InterPro:IPR002347" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q8Z4C9" FT /protein_id="CAD05941.1" FT /translation="MNQVAVVIGGGQTLGAFLCRGLAEEGYRVAVVDIQSDKAANVAQE FT INADFGEGMAYGFGADATSEQSVLALSRGVDEIFGRVDLLVYSAGIAKAAFISDFQLGD FT FDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSKHNSGYSAAKFGGVG FT LTQSLALDLAEYGITVHSLMLGNLLKSPMFQSLLPQYATKLCIKPDEVEQYYIDKVPLK FT RGCDYQDVLNMLLFYASPKASYCTGQSINVTGGQVMF" FT misc_feature 131119..131682 FT /note="Pfam match to entry PF00106 adh_short, short chain FT dehydrogenase, score 205.40, E-value 8.6e-58" FT misc_feature 131533..131619 FT /note="PS00061 Short-chain dehydrogenases/reductases family FT signature" FT misc_feature 131794..131868 FT /note="Pfam match to entry PF00678 adh_short_C2, Short FT chain dehydrogenase/reductase C-terminus, score 16.10, FT E-value 0.0085" FT RBS 131958..131962 FT /note="possible RBS" FT CDS 131969..132328 FT /transl_table=11 FT /gene="STY2957" FT /gene_synonym="srlM" FT /gene_synonym="gutM" FT /product="glucitol operon activator protein" FT /note="Orthologue of E. coli gutM (GUTM_ECOLI); Fasta hit FT to GUTM_ECOLI (119 aa), 83% identity in 119 aa overlap" FT /db_xref="InterPro:IPR009693" FT /db_xref="UniProtKB/TrEMBL:Q8XH08" FT /protein_id="CAD05942.1" FT /translation="MVSTLITVAVIAWCAQLALGGWQISRFNRAFDKLSQQGRVGVGRS FT GGRFKPRVVVAVALDEQQRVTDTLLMKGLTVFARPVKIAAMQGKHLHELQPDVIFPHDS FT LAQNALSLALKLKHG" FT CDS 132395..132508 FT /transl_table=11 FT /gene="STY2958" FT /product="hypothetical protein" FT /note="Unknown function. Improbable ORF" FT /db_xref="UniProtKB/TrEMBL:Q8Z4C8" FT /protein_id="CAD05943.1" FT /translation="MQEGGDAANPLERTSIRDRGERGKPTHMQREVLRVNT" FT CDS 132527..133300 FT /transl_table=11 FT /gene="STY2959" FT /gene_synonym="srlR" FT /gene_synonym="gutR" FT /product="glucitol operon repressor" FT /note="Fasta hit to GATR_ECOLI (259 aa), 40% identity in FT 256 aa overlap" FT /note="Fasta hit to AGAR_ECOLI (269 aa), 36% identity in FT 254 aa overlap" FT /note="Fasta hit to YDJF_ECOLI (252 aa), 31% identity in FT 234 aa overlap" FT /note="Fasta hit to GLPR_ECOLI (252 aa), 30% identity in FT 251 aa overlap" FT /note="Fasta hit to YCIT_ECOLI (249 aa), 32% identity in FT 231 aa overlap" FT /note="Orthologue of E. coli srlR (SRLR_ECOLI); Fasta hit FT to SRLR_ECOLI (257 aa), 95% identity in 257 aa overlap" FT /db_xref="GOA:Q8XF86" FT /db_xref="InterPro:IPR001034" FT /db_xref="InterPro:IPR014036" FT /db_xref="InterPro:IPR018356" FT /db_xref="UniProtKB/TrEMBL:Q8XF86" FT /protein_id="CAD05944.1" FT /translation="MKPRQRQAAILEHLQKQGKCSVEELAQYFDTTGTTIRKDLVILEN FT AGTVIRTYGGVVLNKEESDPPIDHKTLINTHKKALIAAAAVKYIHDGDSIILDAGSTVL FT QMVPLLSRFSNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSASFHGQLAENAFEQ FT FSFDKLFMGTDGIDLNVGVTTFNEVYTVSNAMCNAAREVILMADSSKFGRKSPNVVCSL FT ETVDKLITDAGIDPAFRQALEAKGIEVIITGESNE" FT misc_feature 132542..132646 FT /note="PS00894 Bacterial regulatory proteins, deoR family FT signature" FT misc_feature 132542..133219 FT /note="Pfam match to entry PF00455 deoR, Bacterial FT regulatory proteins, deoR family, score 392.70, E-value FT 3.7e-114" FT RBS 133283..133286 FT /note="possible RBS" FT CDS 133293..134258 FT /transl_table=11 FT /gene="STY2960" FT /gene_synonym="gutQ" FT /product="putative phosphosugar binding protein" FT /note="Similar to Escherichia coli polysialic acid capsule FT expression protein KpsF kpsF SW:KSF5_ECOLI (Q47334) (327 FT aa) fasta scores: E(): 0, 40.7% id in 312 aa. KpsF is not FT essential for K5 antigen expression. This protein may be an FT isomerase, or possible a regulator" FT /note="Fasta hit to YRBH_ECOLI (328 aa), 46% identity in FT 315 aa overlap" FT /note="Orthologue of E. coli gutQ (GUTQ_ECOLI); Fasta hit FT to GUTQ_ECOLI (308 aa), 93% identity in 308 aa overlap" FT /db_xref="GOA:Q8Z4C7" FT /db_xref="InterPro:IPR000644" FT /db_xref="InterPro:IPR001347" FT /db_xref="InterPro:IPR004800" FT /db_xref="UniProtKB/TrEMBL:Q8Z4C7" FT /protein_id="CAD05945.1" FT /translation="MSDALLNAGRQTLMLELQEASRLPERLGDDFVRAANIIIHCEGKV FT IVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKE FT LDLIIPRLEDKSVALLAMTGKPHSPLGRAAKAVLDISVEREACPMHLAPTSSTVNTLMM FT GDALAMAVMQARGFNEEDFARSHPAGALGARLLNNVHHLMRQGDAIPQVMLATSVMDAM FT LELSRTGLGLVAVCDEQHVVKGVFTDGDLRRWLVGGGALTTPVSEAMTPNGITLQAQSR FT AIDAKELLMKRKITAAPVVDENGKLTGAINLQDFYQAGII" FT misc_feature 133398..133802 FT /note="Pfam match to entry PF01380 SIS, SIS domain, score FT 147.40, E-value 2.5e-40" FT misc_feature 133899..134060 FT /note="Pfam match to entry PF00571 CBS, CBS domain, score FT 28.80, E-value 0.00013" FT misc_feature 134091..134252 FT /note="Pfam match to entry PF00571 CBS, CBS domain, score FT 33.00, E-value 6.7e-06" FT CDS complement(134255..135775) FT /transl_table=11 FT /gene="STY2961" FT /gene_synonym="ygaA" FT /product="putative sigma-54-dependent transriptional FT regulator" FT /note="Similar to e.g. Enterobacter agglomerans FT nif-specific regulatory protein NifA nifA SW:NIFA_ENTAG FT (P54930) (518 aa) fasta scores: E(): 0, 43.9% id in 401 aa FT and Escherichia coli hydrogenase-4 transcriptional FT activator HyfR hyfR SW:HYFR_ECOLI (P71229) (670 aa) fasta FT scores: E(): 0, 43.6% id in 404 aa" FT /note="Fasta hit to NTRC_ECOLI (469 aa), 37% identity in FT 452 aa overlap" FT /note="Fasta hit to YFHA_ECOLI (444 aa), 37% identity in FT 451 aa overlap" FT /note="Orthologue of E. coli ygaA (YGAA_ECOLI); Fasta hit FT to YGAA_ECOLI (529 aa), 88% identity in 507 aa overlap" FT /db_xref="GOA:Q8Z4C6" FT /db_xref="InterPro:IPR002078" FT /db_xref="InterPro:IPR003018" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR009057" FT /db_xref="UniProtKB/Swiss-Prot:Q8Z4C6" FT /protein_id="CAD05946.1" FT /translation="MSFSVEVLAGIAIELQRGIGHQDRFQRLITTLRQVLACDASALLR FT YESRQFIPLAIDGLAQDVLGRRFTLEGHPRLEAIARAGDVVRFPADSDLPDPYDGLIPG FT QESLKVHACVGLPLFAGQNLIGALTLDAMTPEQFEVFSDEELRLVAALAAGALSNALLI FT EQLESQNMLPGSSGVFEPIKETHMIGLSPAMTQLKKEIEIVAGSDLNVLIGGETGTGKE FT LVAKAIHQGSPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFEMADNG FT TLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLREEVLAGRF FT RADLFHRLSVFPLFVPPLRERGDDVVLLAGYFCEQCRLRLGLSRVVLSPGARRHLLNYG FT WPGNVRELEHAIHRAVVLARATRAGDEVVLEEQHFALSEDVLPAPSAESFLALPACRNL FT RESTENFQREMIRQALAQNNHNWAASARALETDVANLHRLAKRLGLKD" FT misc_feature complement(134522..135217) FT /note="Pfam match to entry PF00158 sigma54, Sigma-54 FT transcription factors, score 503.50, E-value 1.5e-147" FT misc_feature complement(134549..134578) FT /note="PS00688 Sigma-54 interaction domain C-terminal part FT signature" FT misc_feature complement(134912..134959) FT /note="PS00676 Sigma-54 interaction domain ATP-binding FT region B signature" FT misc_feature complement(135104..135145) FT /note="PS00675 Sigma-54 interaction domain ATP-binding FT region A signature" FT misc_feature complement(135290..135718) FT /note="Pfam match to entry PF01590 GAF, GAF domain, score FT 67.30, E-value 3.3e-16" FT RBS complement(135780..135784) FT /note="possible RBS" FT RBS 135952..135957 FT /note="possible RBS" FT CDS 135961..137400 FT /transl_table=11 FT /gene="STY2962" FT /product="putative flavoprotein" FT /note="Similar to Methanobacterium thermoautotrophicum FT flavoprotein fprA TR:Q50497 (EMBL:U17835) (404 aa) fasta FT scores: E(): 0, 38.5% id in 403 aa and to many putative FT flavoproteins" FT /note="Orthologue of E. coli Q46877; Fasta hit to Q46877 FT (479 aa), 94% identity in 479 aa overlap" FT /db_xref="GOA:Q8Z4C5" FT /db_xref="InterPro:IPR001052" FT /db_xref="InterPro:IPR001279" FT /db_xref="InterPro:IPR004039" FT /db_xref="InterPro:IPR008254" FT /db_xref="InterPro:IPR016440" FT /db_xref="UniProtKB/Swiss-Prot:Q8Z4C5" FT /protein_id="CAD05947.1" FT /translation="MSILVKNNIHWVGQRDWEVRDFHGTEYKTLRGSSYNSYLIREEKN FT VLIDTVDHKFSREFVQNLRSEIDLADIDYIIINHAEEDHAGALTELMAQIPDTPIYCTA FT NAIDSINGHHHHPEWNFKVVKTGDTLDIGDGKQLIFVETPMLHWPDSMMTYMTGDAVLF FT SNDAFGQHYCDEHLFNDEVDQTELFEQCQRYYANILTPFSRLVTPKITEILGFNLPVDM FT IATSHGVVWRDNPTQIVELYLKWAADYQEDRITIFYDTMSNNTRMMADAIAQGINEVDP FT NVAVKIFNVARSDKNEILTNVFRSKGVLVGTSTMNNVMMPKIAGLVEEMTGLRFRNKRA FT SAFGSHGWSGGAVDRLSTRLQDAGFEMSLSLKAKWRPDLDALELCRQHGRDIARQWALA FT PLPETTQKTAPVEETTTCTAADLGPKMQCSVCQWIYDPALGEPLQDVAPGTPWSDVPDN FT FLCPECSLGKDVFDVLATEAK" FT misc_feature 136048..136590 FT /note="Pfam match to entry PF00753 lactamase_B, FT Metallo-beta-lactamase superfamily, score 83.90, E-value FT 3.2e-21" FT misc_feature 137227..137373 FT /note="Pfam match to entry PF00301 rubredoxin, Rubredoxin, FT score 85.90, E-value 3.7e-23" FT RBS 137388..137392 FT /note="possible RBS" FT CDS 137397..138530 FT /transl_table=11 FT /gene="STY2963" FT /product="putative rubredoxin reductase" FT /note="Similar to many oxidoreductases, especially FT rubredoxin (which may be relevant as the upstream gene FT contains a rubredoxin type domain), e.g. Acinetobacter FT calcoaceticus rubredoxin-NAD(+) reductase rubB FT SW:RURE_ACICA (P42454) (392 aa) fasta scores: E(): 6.9e-28, FT 36.1% id in 366 aa and Bacillus subtilis assimilatory FT nitrate reductase electron transfer subunit nasB or nasBa FT SW:NASB_BACSU (P42433) (770 aa) fasta scores: E(): 4.8e-23, FT 25.4% id in 378 aa" FT /db_xref="GOA:Q8Z4C4" FT /db_xref="InterPro:IPR001327" FT /db_xref="InterPro:IPR013027" FT /db_xref="UniProtKB/Swiss-Prot:Q8Z4C4" FT /protein_id="CAD05948.1" FT /translation="MSRGIIIIGSGFAARQLVKNIRKQDAHVPLTLIAADSMDEYNKPD FT LSHVISQSQRADDLTRQLAGEFAEQFNLRLFPHTWVTDIDADAHVVKSQDKQWQYDKLV FT LTTGATAFVPPIAGRELMLTLNSQQEYRACETPLRDAQRVLIVGGGLIGSELAMDFCRA FT GKTVTLMDNAASLLASLMPPEVSSRLQHHLTDMGVHLLLKSQLQKLEKTEAGIRATLVS FT QHSIEVDAVIAATGLRPETALARRAGVAVNRGVCVDSYLQTSHPDIYAIGDCAEINGQV FT LPFLQPIQLSAMYLAKNLLGGNAPLKLPAMLVKVKTPELPLHLAGETQRRDLSWQITAE FT SDGMIAKGMSGEGQLRAFVVSEDRMKEAFALLKTLSV" FT misc_feature 137409..138218 FT /note="Pfam match to entry PF00070 pyr_redox, Pyridine FT nucleotide-disulphide oxidoreductase, score 204.10, E-value FT 1.6e-59" FT CDS complement(138627..140867) FT /transl_table=11 FT /gene="hypf" FT /gene_synonym="hydA" FT /gene_synonym="STY2964" FT /product="hydrogenase maturation protein" FT /note="Similar to Escherichia coli hydrogenase maturation FT protein hypf hypf or hydA SW:HYPF_ECOLI (P30131) (750 aa) FT fasta scores: E(): 0, 84.5% id in 743 aa, and to FT Rhodobacter capsulatus hydrogenase maturation protein HypF FT hypF SW:HYPF_RHOCA (Q02987) (739 aa) fasta scores: E(): 0, FT 46.0% id in 744 aa" FT /note="Orthologue of E. coli hypF (HYPF_ECOLI); Fasta hit FT to HYPF_ECOLI (750 aa), 85% identity in 743 aa overlap" FT /db_xref="GOA:Q8Z4C3" FT /db_xref="HSSP:1GXU" FT /db_xref="InterPro:IPR001792" FT /db_xref="InterPro:IPR004421" FT /db_xref="InterPro:IPR006070" FT /db_xref="InterPro:IPR011125" FT /db_xref="InterPro:IPR017945" FT /db_xref="InterPro:IPR017968" FT /db_xref="UniProtKB/TrEMBL:Q8Z4C3" FT /protein_id="CAD05949.1" FT /translation="MAIDTPSGVQLRIRGKVQGVGFRPFVWQLAQQLQLHGDVCNDGDG FT VVVRLLEDPSQFIAALYQDCPPLARIDSVEHASLVWERAPTDFTIRQSAGGSMNTQIVP FT DAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPECD FT SEYRDPYDRRFHAQPVACPSCGPHLEWRSQHERAEKEAALQAAVAQLNAGGIIAVKGLG FT GFHLACDARNDNAVAMLRARKHRPAKPLAVMLPTAQTLPTAARSLLTTPAAPIVLVDKQ FT YVPSLSEGIAPGLTEVGVMLPANPLQHLLLQALNYPLVMTSGNLSGKPPAITNEQALDD FT LHDIADGFLLHNRDIVQRMDDSVVRDSGEMLRRSRGYVPDAIALPPGFRDVPPILCLGA FT DLKNTFCLVRGEQAVVSQHLGDLSDDGIQAQWREALRLIQSIYDFTPERIVCDAHPGYV FT SSQWASEMRLPTETVLHHHAHAAACLAEHGWPLDGGEVIALTVDGIGMGENGALWGGEC FT LRVNYRECEHLGGLPAVALPGGDLAAKQPWRNLLAQCLRFVPDWQNYPETAGLQQQNWS FT VLARAIERGVNAPLASSCGRLFDAVAAALRCAPASLSYEGEAACALEALASQCANVEYP FT VTMPLNGAQLDVAVFWRQWLNWQATPAQRAWAFHDALACGFATLMRQQATARGITTLVF FT SGGVIHNRLLRARLAFYLSDFKLLFPQRLPAGDGGLSFGQGVIAAARALREV" FT misc_feature complement(139746..140249) FT /note="Pfam match to entry PF01300 Sua5_yciO_yrdC, FT SUA5/yciO/yrdC family, score 243.60, E-value 2.8e-69" FT misc_feature complement(140598..140855) FT /note="Pfam match to entry PF00708 Acylphosphatase, FT Acylphosphatase, score 23.00, E-value 1.1e-05" FT misc_feature complement(140799..140831) FT /note="PS00150 Acylphosphatase signature 1" FT CDS complement(141013..141558) FT /transl_table=11 FT /gene="hydN" FT /gene_synonym="STY2965" FT /product="electron transport protein" FT /note="Fasta hit to YSAA_ECOLI (157 aa), 62% identity in FT 162 aa overlap" FT /note="Fasta hit to P77186 (208 aa), 32% identity in 170 aa FT overlap" FT /note="Fasta hit to YGFS_ECOLI (162 aa), 41% identity in FT 167 aa overlap" FT /note="Fasta hit to HYCB_ECOLI (203 aa), 40% identity in FT 187 aa overlap" FT /note="Fasta hit to HYFA_ECOLI (205 aa), 35% identity in FT 196 aa overlap" FT /note="Fasta hit to DMSB_ECOLI (204 aa), 36% identity in FT 194 aa overlap" FT /note="Fasta hit to P77313 (205 aa), 36% identity in 194 aa FT overlap" FT /note="Orthologue of E. coli hydN (HYDN_ECOLI); Fasta hit FT to HYDN_ECOLI (175 aa), 96% identity in 173 aa overlap" FT /db_xref="GOA:Q8XGF0" FT /db_xref="HSSP:1KQF" FT /db_xref="InterPro:IPR001450" FT /db_xref="InterPro:IPR017896" FT /db_xref="InterPro:IPR017900" FT /db_xref="UniProtKB/TrEMBL:Q8XGF0" FT /protein_id="CAD05950.1" FT /translation="MNRFIIADASKCIGCRTCEVACVVSHQENQDCASLTPETFLPRIH FT VIKGVNVSTATLCRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYGAM FT EVVVRPVVRNSGAGLNVRAEKAEANKCDLCHHREAGPACMAACPTHALICVDRNKLEQL FT SAEKRRRAALDSTASLLF" FT misc_feature complement(141151..141168) FT /note="PS00190 Cytochrome c family heme-binding site FT signature" FT misc_feature complement(141244..141315) FT /note="Pfam match to entry PF00037 fer4, 4Fe-4S binding FT domain, score 36.70, E-value 5.4e-07" FT misc_feature complement(141259..141294) FT /note="PS00198 4Fe-4S ferredoxins, iron-sulfur binding FT region signature" FT misc_feature complement(141475..141546) FT /note="Pfam match to entry PF00037 fer4, 4Fe-4S binding FT domain, score 9.40, E-value 0.09" FT RBS complement(141565..141568) FT /note="possible RBS" FT CDS complement(141759..142538) FT /transl_table=11 FT /gene="STY2966" FT /product="putative exported protein" FT /note="Unknown function. Contains a probable N-terminal FT signal sequence" FT /db_xref="UniProtKB/TrEMBL:Q8Z4C2" FT /protein_id="CAD05951.1" FT /translation="MKIIVWSGLLFLCLAARALATGVVGYLPMSDGEYAQKRALKPLLI FT LPYSVSPDQTWHFRQVGVSSVTLLPEPKKDNEWRISGKDRAGNSWVVPVGRLINLAGNA FT QFYRADLDRNGIQDLVIWLGNPGLGLAPSAQYIIFTFLKNGRPCVFEPWGFYTATDTGV FT DDLLDLQGNGRTQLLDMQFDSGYWITNLYQVKDARWQRVHGWFGRLSYPALTRFNHYPG FT RKLIIKPIAGRNPQTDDLSLTQRCLIRGNVLPGVNQD" FT CDS complement(142595..143065) FT /transl_table=11 FT /gene="STY2967" FT /gene_synonym="hycI" FT /product="hydrogenase 3 maturation protease" FT /EC_number="3.4.-.-" FT /note="Orthologue of E. coli hycI (HYCI_ECOLI); Fasta hit FT to HYCI_ECOLI (155 aa), 92% identity in 154 aa overlap" FT /db_xref="GOA:Q8Z4C1" FT /db_xref="InterPro:IPR000671" FT /db_xref="InterPro:IPR004420" FT /db_xref="UniProtKB/TrEMBL:Q8Z4C1" FT /protein_id="CAD05952.1" FT /translation="MTDVLLCVGNSMMGDDGAGPLLAEMCAAQPKGNWVVIDGGSAPEN FT DIVAIRELRPQRLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDLLKED FT VGEVIFVGIQPDIVGFYYPMTQPIKDAVNIVYQRLEGWQGNGGFAALDAPEA" FT misc_feature complement(142640..143008) FT /note="Pfam match to entry PF01750 HycI, Hydrogenase FT maturation protease, score 131.70, E-value 1.3e-35" FT CDS complement(143058..143468) FT /transl_table=11 FT /gene="STY2968" FT /gene_synonym="hycH" FT /product="formate hydrogenlyase maturation protein" FT /note="Fasta hit to P76566 (158 aa), 48% identity in 131 aa FT overlap" FT /note="Orthologue of E. coli hycH (HYCH_ECOLI); Fasta hit FT to HYCH_ECOLI (136 aa), 92% identity in 136 aa overlap" FT /db_xref="GOA:Q8Z4C0" FT /db_xref="InterPro:IPR010005" FT /db_xref="UniProtKB/TrEMBL:Q8Z4C0" FT /protein_id="CAD05953.1" FT /translation="MSEQVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCL FT EAALTCPWDEYLAWIATLEAGSDARRKMEGVPKYGEIVIDFNHVQMLARAFDEARAAQT FT PQQQEWSKLMLSMLHDIHQESAIYLMVRRLRD" FT RBS complement(143070..143075) FT /note="possible RBS" FT CDS complement(143465..144232) FT /transl_table=11 FT /gene="STY2969" FT /gene_synonym="hycG" FT /product="formate hydrogenlyase subunit 7" FT /note="Fasta hit to HYFI_ECOLI (252 aa), 62% identity in FT 250 aa overlap" FT /note="Orthologue of E. coli hycG (HYCG_ECOLI); Fasta hit FT to HYCG_ECOLI (255 aa), 97% identity in 255 aa overlap" FT /db_xref="GOA:Q8Z4B9" FT /db_xref="InterPro:IPR006137" FT /db_xref="InterPro:IPR006138" FT /db_xref="InterPro:IPR014406" FT /db_xref="UniProtKB/TrEMBL:Q8Z4B9" FT /protein_id="CAD05954.1" FT /translation="MSNLLGPRDANGIPVPMTVDESIASMKASLLKNIKRSAYVYRVDC FT GGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAP FT DPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLL FT EQKIHARAPGELDDQPAEILHPDMVQPLRVKVDRAACRLAGYRYGRQIADDYLTQLGQG FT EQQVARWLEAENDPRLTEIVIHLNHVVEEARIR" FT RBS complement(143479..143482) FT /note="possible RBS" FT misc_feature complement(143753..144076) FT /note="Pfam match to entry PF01058 oxidored_q6, NADH FT ubiquinone oxidoreductase, 20 Kd subunit, score 185.20, FT E-value 1e-51" FT misc_feature complement(143792..143842) FT /note="PS01150 Respiratory-chain NADH dehydrogenase 20 Kd FT subunit signature" FT CDS complement(144232..144774) FT /transl_table=11 FT /gene="STY2970" FT /gene_synonym="hycF" FT /product="formate hydrogenlyase subunit 6" FT /note="Fasta hit to HYFH_ECOLI (181 aa), 47% identity in FT 172 aa overlap" FT /note="Orthologue of E. coli hycF (HYCF_ECOLI); Fasta hit FT to HYCF_ECOLI (180 aa), 97% identity in 178 aa overlap" FT /db_xref="GOA:Q8XGK2" FT /db_xref="HSSP:2FDN" FT /db_xref="InterPro:IPR001450" FT /db_xref="InterPro:IPR017896" FT /db_xref="InterPro:IPR017900" FT /db_xref="UniProtKB/TrEMBL:Q8XGK2" FT /protein_id="CAD05955.1" FT /translation="MFTFIKKVIKTGTATSSYPLEPIAVDKNFRGKPEHNPQQCIGCAA FT CVNACPSNALTVETDLATNELAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKE FT DFLQQSRFALCNCRVCNRPFAVQKEIDYAIALLAHNGDSRAENHRESFETCPDCKRQKC FT LVPSDRIELTRHMKEVS" FT RBS complement(144240..144243) FT /note="possible RBS" FT misc_feature complement(144502..144573) FT /note="Pfam match to entry PF00037 fer4, 4Fe-4S binding FT domain, score 38.50, E-value 1.5e-07" FT misc_feature complement(144517..144552) FT /note="PS00198 4Fe-4S ferredoxins, iron-sulfur binding FT region signature" FT misc_feature complement(144607..144678) FT /note="Pfam match to entry PF00037 fer4, 4Fe-4S binding FT domain, score 35.10, E-value 1.6e-06" FT misc_feature complement(144622..144657) FT /note="PS00198 4Fe-4S ferredoxins, iron-sulfur binding FT region signature" FT RBS complement(144781..144786) FT /note="possible RBS" FT CDS complement(144784..146493) FT /transl_table=11 FT /gene="STY2971" FT /gene_synonym="hycE" FT /product="formate hydrogenlyase subunit 5" FT /note="Fasta hit to HYFG_ECOLI (555 aa), 72% identity in FT 563 aa overlap" FT /note="Orthologue of E. coli hycE (HYCE_ECOLI); Fasta hit FT to HYCE_ECOLI (569 aa), 97% identity in 569 aa overlap" FT /db_xref="GOA:Q8Z4B8" FT /db_xref="InterPro:IPR001135" FT /db_xref="InterPro:IPR001268" FT /db_xref="InterPro:IPR001501" FT /db_xref="InterPro:IPR014029" FT /db_xref="UniProtKB/TrEMBL:Q8Z4B8" FT /protein_id="CAD05956.1" FT /translation="MFEEKLGQQYLAALHQAFPGVVMDEAWQTKDQLTITVKVNYLPEV FT VEFLYYQQGGWLSVLFGNDERQLCGHYAVYYVLSMEQGTKCWITVRVEVDANKLEFPSV FT TPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTT FT DAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEK FT LAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERL FT HSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKE FT DMIQTRQLAQQMRRDVQELVDMLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGH FT ARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTSLNMIDFGLDNLPGGPLM FT VEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNT FT VSDAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKNSPLK" FT misc_feature complement(144883..145014) FT /note="Pfam match to entry PF00346 complex1_49Kd, FT Respiratory-chain NADH dehydrogenase, 49 Kd subunit, score FT 21.60, E-value 1.3e-07" FT misc_feature complement(145096..145383) FT /note="Pfam match to entry PF00346 complex1_49Kd, FT Respiratory-chain NADH dehydrogenase, 49 Kd subunit, score FT 8.10, E-value 0.0097" FT misc_feature complement(145636..145779) FT /note="Pfam match to entry PF00374 NiFeSe_Hases, FT Nickel-dependent hydrogenases, score 31.30, E-value FT 4.3e-09" FT misc_feature complement(145813..145848) FT /note="PS00535 Respiratory chain NADH dehydrogenase 49 Kd FT subunit signature" FT misc_feature complement(146041..146226) FT /note="Pfam match to entry PF00329 complex1_30Kd, FT Respiratory-chain NADH dehydrogenase, 30 Kd subunit, score FT 39.60, E-value 2.3e-09" FT CDS complement(146511..147434) FT /transl_table=11 FT /gene="STY2972" FT /gene_synonym="hycD" FT /product="formate hydrogenlyase subunit 4" FT /note="Fasta hit to HYFC_ECOLI (315 aa), 54% identity in FT 301 aa overlap" FT /note="Orthologue of E. coli hycD (HYCD_ECOLI); Fasta hit FT to HYCD_ECOLI (307 aa), 91% identity in 307 aa overlap" FT /db_xref="GOA:Q8Z4B7" FT /db_xref="InterPro:IPR001694" FT /db_xref="InterPro:IPR018086" FT /db_xref="UniProtKB/TrEMBL:Q8Z4B7" FT /protein_id="CAD05957.1" FT /translation="MSVFYPLIQALVLFAVAPLLSGITRVARARLHNRRGPGVLQEYRD FT IIKLLGRQSIAPADSGWVFRLTPFVMVGVMLTIATALPVVTVGSPLPQLGDLITLIYLF FT AIARFFFSIAGLDTGSPFTAIGASREAMLGVLVEPILLLGLWVAAQVAGSTHISNIADT FT IYHWPVARSIPLILALCACAFATFIEMGKLPFDLAEAEQELQEGPLTEYSGSGFAVLKW FT GISLKQLVVLQMFVGVFLPWGQMETFSAGGLLLALVIAVVKLIVGVLVIALFENSMARL FT RFCATSRVTWAGFGFAFLAFVSLLAA" FT misc_feature complement(146514..147434) FT /note="Pfam match to entry PF00146 NADHdh, NADH FT dehydrogenases, score 305.70, E-value 5.7e-88" FT misc_feature complement(146814..146855) FT /note="PS00668 Respiratory-chain NADH dehydrogenase subunit FT 1 signature 2" FT misc_feature complement(147276..147323) FT /note="PS00667 Respiratory-chain NADH dehydrogenase subunit FT 1 signature 1" FT CDS complement(147437..149263) FT /transl_table=11 FT /gene="STY2973" FT /gene_synonym="hycC" FT /product="formate hydrogenlyase subunit 3" FT /note="Fasta hit to HYFB_ECOLI (672 aa), 38% identity in FT 607 aa overlap" FT /note="Orthologue of E. coli hycC (HYCC_ECOLI); Fasta hit FT to HYCC_ECOLI (608 aa), 89% identity in 608 aa overlap" FT /db_xref="GOA:Q8Z4B6" FT /db_xref="InterPro:IPR001750" FT /db_xref="UniProtKB/TrEMBL:Q8Z4B6" FT /protein_id="CAD05958.1" FT /translation="MSSLSLITSGVAWFAAAAVLAFLFSFHKALSGWIAGIGGAVGSLC FT TAGAGFTALTSAVTVSGVMPFTGHMLQITPLNAIWLITLGLCGLFVSLFNIDWHRHPQV FT KANGLLINLLMAAAVCAVVASNLGTMVVMAEIMALCAVFLTGGSKEGKLWFALGRLGTL FT LLAIACWLVWQRYGTLDLGLLDQRAQQLPLGSDIWLLGVIGFGLLAGIIPLHGWVPQAH FT ANASAPAAALFSTVVMKIGLLGILSLSLLGGNAPLWWGVALLVLGMITAFVGGLYALME FT HNIQRLLAYHTLENIGIILLGLGAGVTGIALNQPVLIALGLTGGLYHLLNHSLFKSVLL FT LGAGSIWFRTGHRDIEKLGGIGKRMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFF FT KLGNSGAFVGRLLGPLLAVGLAITGALAVMCMAKVYGVTFLGAPRTKEAENASCAPILM FT GVSVVALAVCCVLGGVAAPWLLPMISTAVPLPLETAHTTVSQPMITLLLVACPLLPFII FT MAMFKGNRLPSRSRGAAWVCGYDHEQSMVITAHGFAMPVKEAFAPVLKLRKWLNPVSLV FT PGWQNAAAAGLFRRLALIELAVLVVIVVSRGA" FT RBS complement(147442..147446) FT /note="possible RBS" FT misc_feature complement(148001..148894) FT /note="Pfam match to entry PF00361 oxidored_q1, FT NADH-Ubiquinone/plastoquinone (complex I), various chains, FT score 106.50, E-value 4.5e-29" FT CDS complement(149263..149871) FT /transl_table=11 FT /gene="STY2974" FT /gene_synonym="hycB" FT /product="formate hydrogenlyase subunit 2" FT /note="Fasta hit to YSAA_ECOLI (157 aa), 38% identity in FT 187 aa overlap" FT /note="Fasta hit to YGFS_ECOLI (162 aa), 36% identity in FT 181 aa overlap" FT /note="Fasta hit to HYFA_ECOLI (205 aa), 51% identity in FT 186 aa overlap" FT /note="Fasta hit to HYDN_ECOLI (175 aa), 39% identity in FT 190 aa overlap" FT /note="Orthologue of E. coli hycB (HYCB_ECOLI); Fasta hit FT to HYCB_ECOLI (203 aa), 96% identity in 202 aa overlap" FT /db_xref="GOA:Q8XFS6" FT /db_xref="InterPro:IPR001450" FT /db_xref="InterPro:IPR017896" FT /db_xref="InterPro:IPR017900" FT /db_xref="UniProtKB/TrEMBL:Q8XFS6" FT /protein_id="CAD05959.1" FT /translation="MNRFVIADSTLCIGCHTCEAACSETHRQHGLQSMPRLKVMLNEKE FT SAPQLCHHCEDAPCATVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEFSGSRP FT LHIPANANTPKAPPAPPAPARVSTLLDWVPGVRAIAVKCDLCSFDEQGPACVRMCPTKA FT LHLVENTDIARASKRKRELTFNTDFGDLTLFQQAQSGDA" FT misc_feature complement(149578..149649) FT /note="Pfam match to entry PF00037 fer4, 4Fe-4S binding FT domain, score 34.00, E-value 3.3e-06" FT misc_feature complement(149593..149628) FT /note="PS00198 4Fe-4S ferredoxins, iron-sulfur binding FT region signature" FT misc_feature complement(149821..149838) FT /note="PS00190 Cytochrome c family heme-binding site FT signature" FT RBS complement(149880..149883) FT /note="possible RBS" FT CDS complement(150017..150478) FT /transl_table=11 FT /gene="STY2975" FT /gene_synonym="hycA" FT /product="formate hydrogenlyase regulatory protein" FT /note="Orthologue of E. coli hycA (HYCA_ECOLI); Fasta hit FT to HYCA_ECOLI (153 aa), 89% identity in 152 aa overlap" FT /db_xref="GOA:Q8XGG0" FT /db_xref="UniProtKB/TrEMBL:Q8XGG0" FT /protein_id="CAD05960.1" FT /translation="MTIWEISEKADYIAQRHRRLQDQWHIYCNSLVQGITLSKARLHHA FT MSCAPERDLCFVLFEHFRIYVALADGFNSHTIEYYVETKDGEDKQLIAQAQLDIDGKVD FT ERVNNRDREQVLEHYLEKIASVYDSLYTAVETNSPVNLRQLVKGHSPAV" FT RBS 150679..150683 FT /note="possible RBS" FT misc_feature 150688..151029 FT /note="Pfam match to entry PF01155 HypA, Hydrogenase FT expression/synthesis hypA family, score 240.40, E-value FT 2.6e-68" FT CDS 150688..151044 FT /transl_table=11 FT /gene="STY2976" FT /gene_synonym="hypA" FT /product="HypA protein" FT /note="Fasta hit to HYBF_ECOLI (113 aa), 48% identity in FT 114 aa overlap" FT /note="Orthologue of E. coli hypA (HYPA_ECOLI); Fasta hit FT to HYPA_ECOLI (116 aa), 87% identity in 115 aa overlap" FT /db_xref="GOA:P64420" FT /db_xref="InterPro:IPR000688" FT /db_xref="InterPro:IPR020538" FT /db_xref="UniProtKB/Swiss-Prot:P64420" FT /protein_id="CAD05961.1" FT /translation="MHEITLCQRALELIEQQASAYGAKRVTAVWIKIGAFSCVETSALS FT FCFDLVCRGTIAEGCKLHLEEQEAECWCEHCQQYVTLLTHRVRRCPQCHSDTLRIVADD FT GLQIRRIEIDETED" FT misc_feature 150823..150966 FT /note="PS01249 Hydrogenases expression/synthesis hypA FT family signature" FT RBS 151103..151107 FT /note="possible RBS" FT CDS 151114..151986 FT /transl_table=11 FT /gene="STY2977" FT /gene_synonym="hypB" FT /product="hydrogenase isoenzymes formation protein HypB" FT /note="Orthologue of E. coli hypB (HYPB_ECOLI); Fasta hit FT to HYPB_ECOLI (290 aa), 95% identity in 290 aa overlap" FT /db_xref="GOA:Q8Z4B5" FT /db_xref="InterPro:IPR003495" FT /db_xref="InterPro:IPR004392" FT /db_xref="InterPro:IPR012202" FT /db_xref="UniProtKB/TrEMBL:Q8Z4B5" FT /protein_id="CAD05962.1" FT /translation="MCTTCGCAEGNLYIEGDEHNPHSAFRSAPFAPAARPALNITGIKT FT PDFTPSQTAEGDLHYGHGEAGTHAPGMSQRRMLEVEIDVLDKNNRLAERNRARFAARQQ FT LVLNLVSSPGSGKTTLLTETLMKLKDRVPCAVIEGDQQTVNDAARIRATGTPAIQVNTG FT KGCHLDAQMIADAAPRLPLDDHGILFIENVGNLVCPASFDLGEKHKVAVLSVTEGEDKP FT LKYPHMFAAASLMLLNKVDLLPYLNFDVEKCIASAREVNPEIEIILISATSGEGMDQWL FT AWLEAQRCA" FT misc_feature 151393..151776 FT /note="Pfam match to entry PF01495 HypB_UreG, HypB/UreG FT nucleotide-binding domain, score 270.10, E-value 2.9e-77" FT RBS 151965..151969 FT /note="possible RBS" FT misc_feature 151977..152219 FT /note="Pfam match to entry PF01455 HupF_HypC, HupF/HypC FT family, score 159.80, E-value 4.5e-44" FT CDS 151977..152249 FT /transl_table=11 FT /gene="hypC" FT /gene_synonym="STY2978" FT /product="hydrogenase isoenzymes formation protein HypC" FT /note="Similar to Escherichia coli hydrogenase isoenzymes FT formation protein HypC SW:HYPC_ECOLI (P24191) (90 aa) fasta FT scores: E(): 0, 96.7% id in 90 aa" FT /note="Fasta hit to HYBG_ECOLI (82 aa), 59% identity in 81 FT aa overlap" FT /note="Orthologue of E. coli hypC (HYPC_ECOLI); Fasta hit FT to HYPC_ECOLI (90 aa), 97% identity in 90 aa overlap" FT /db_xref="InterPro:IPR001109" FT /db_xref="InterPro:IPR019812" FT /db_xref="UniProtKB/TrEMBL:Q8XG01" FT /protein_id="CAD05963.1" FT /translation="MCIGVPGQIRAIDGNQAKVDVCGIQRDVDLTLVGSCDENGQPRLG FT QWVLVHVGFAMSVINEAEARDTLDALQNMFDVEPDVGALLYGEER" FT RBS 152239..152243 FT /note="possible RBS" FT CDS 152249..153370 FT /transl_table=11 FT /gene="STY2979" FT /gene_synonym="hypD" FT /product="hydrogenase isoenzymes formation protein HypD" FT /note="Orthologue of E. coli hypD (HYPD_ECOLI); Fasta hit FT to HYPD_ECOLI (373 aa), 95% identity in 372 aa overlap" FT /db_xref="GOA:Q8Z4B4" FT /db_xref="InterPro:IPR002780" FT /db_xref="UniProtKB/TrEMBL:Q8Z4B4" FT /protein_id="CAD05964.1" FT /translation="MRFVDEYRAPEQVMQLIEHLRERAALLPYTAERPLRIMEVCGGHT FT HAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDSCVEIASHPEVIFCTFGDAMRVPG FT KQGSLLQAKARGADVRIVYSPMDALKLAQDNPTRKVVFFGLGFETTMPTTAITLQQAKQ FT RDVRNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTEAYQFIAADFHRPL FT VVAGFEPLDLLQGVVMLVEQKIAALSQVENQYRRVVPDAGNMLAQQAIADVFCVNGDSE FT WRGLGVIESSGVHLTPEYQRFDAEAHFRPAPQQVYDDPRARCGEVLTGRCKPHQCPLFG FT KTCNPETAFGALMVSSEGACAAWYQYRQQECEV" FT misc_feature 152273..153355 FT /note="Pfam match to entry PF01924 HypD, Hydrogenase FT formation hypA family, score 873.50, E-value 6.7e-259" FT misc_feature 153409..154290 FT /note="Pfam match to entry PF00586 AIRS, AIR synthase FT related protein, score 341.40, E-value 9.9e-99" FT CDS 153409..154377 FT /transl_table=11 FT /gene="STY2980" FT /gene_synonym="hypE" FT /product="hydrogenase isoenzymes formation protein HypE" FT /note="Orthologue of E. coli hypE (HYPE_ECOLI); Fasta hit FT to HYPE_ECOLI (322 aa), 92% identity in 322 aa overlap" FT /db_xref="GOA:Q8Z4B3" FT /db_xref="InterPro:IPR000728" FT /db_xref="InterPro:IPR010918" FT /db_xref="InterPro:IPR011854" FT /db_xref="InterPro:IPR016188" FT /db_xref="UniProtKB/TrEMBL:Q8Z4B3" FT /protein_id="CAD05965.1" FT /translation="MQQLINSLFMEAFANPWLAEQEDQARLELAQLTAEGDRLAFSTDS FT YVIDPLFFPGGNIGKLAICGTANDVAVSGAIPRYLSCGFILEEGLPMETLKSVVNSMAA FT TAREAGIAIVTGDTKVVQRGAADKLFINTAGMGAIPADIHWGAQTLSVGDVLLVSGTLG FT DHGATILNLREQLGLDGELASDCAVLTPLIQTLRHIDGVKALRDATRGGVNAVAHEFAA FT SCGYGIELSESALPLKPAVRGVCELLGLDALNFANEGKLVIAVERQAADRALAALRAHP FT LGRDAALIGEVVERKGVRLAGLYGVKRTLDLPHAEPLPRIC" FT CDS 154596..156674 FT /transl_table=11 FT /gene="STY2981" FT /gene_synonym="fhlA" FT /product="transcriptional activator of the formate FT hydrogenlyase system" FT /note="Fasta hit to HYFR_ECOLI (670 aa), 50% identity in FT 564 aa overlap" FT /note="Orthologue of E. coli fhlA (FHLA_ECOLI); Fasta hit FT to FHLA_ECOLI (692 aa), 90% identity in 691 aa overlap" FT /db_xref="GOA:Q8Z4B2" FT /db_xref="InterPro:IPR002078" FT /db_xref="InterPro:IPR002197" FT /db_xref="InterPro:IPR003018" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR009057" FT /db_xref="UniProtKB/TrEMBL:Q8Z4B2" FT /protein_id="CAD05966.1" FT /translation="MSYTPMSDLGQQGLFDITRTLLQQPDLASLSEALSQLVKRSALAD FT SAGIVLWQAQSQRAQYYATRENGRPVEYEDETVLAHGPVRRILSRPDALHCNFHEFTET FT WPQLAASGLYPEFGHYCLLPLAAEGRIFGGCEFIRQEDRPWSEKEYDRLHTFTQIVGVV FT AEQIQNRVNNNVDYDLLCRERDNFRILVAITNAVLSRLDINELVSEVAKEIHHYFNIDA FT ISIVLRSHRKNKLNIYSTHYLDEHHPAHEQSEVDEAGTLTERVFKSKEMLLINLNERDP FT LAPYERMLFDTWGNQIQTLCLLPLMSGKTMLGVLKLAQCEEKVFTTANLKLLRQIAERV FT AIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYNVLKQVEMVA FT QSDSTVLILGETGTSKELIARAIHNLSGRSGRRMVKMNCAAMPAGLLESDLFGHERGAF FT TGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKLIQTDVRL FT IAATNRDLKKMVADREFHNDLYYRLNVFPIQLPPLRERPEDIPLLVKAFTFKIARRMGR FT NIDSIPAETLRTLSGMEWPGNVRELENVVERAVLLTRGNVLQLSLPDMTAVTPDTSPVA FT TESAKEGEDEYQLIIRVLKETNGVVAGPKGAAQRLGLKRTPLLSRMKRLGIDKDALA" FT misc_feature 154671..155102 FT /note="Pfam match to entry PF01590 GAF, GAF domain, score FT 48.10, E-value 2e-10" FT misc_feature 155199..155642 FT /note="Pfam match to entry PF01590 GAF, GAF domain, score FT 82.40, E-value 9.5e-21" FT misc_feature 155736..156431 FT /note="Pfam match to entry PF00158 sigma54, Sigma-54 FT transcription factors, score 503.00, E-value 2.3e-147" FT misc_feature 156375..156404 FT /note="PS00688 Sigma-54 interaction domain C-terminal part FT signature" FT CDS complement(156736..157080) FT /transl_table=11 FT /gene="STY2982" FT /gene_synonym="ygbA" FT /product="conserved hypothetical protein" FT /note="Similar to Proteus mirabilis hypothetical protein FT (fragment) ygbA TR:O86435 (EMBL:AJ000084) (75 aa) fasta FT scores: E(): 2.9e-23, 73.0% id in 74 aa" FT /note="Orthologue of E. coli ygbA (YGBA_ECOLI); Fasta hit FT to YGBA_ECOLI (117 aa), 88% identity in 114 aa overlap" FT /db_xref="InterPro:IPR020483" FT /db_xref="UniProtKB/TrEMBL:Q8Z4B1" FT /protein_id="CAD05967.1" FT /translation="MPGKRIAREKLTIKKMIALYESQCPQASAVQGHYDALFAYAQKRL FT DKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWAGPRMLWRHPVLTVRHLIDDKRPVP FT ELPEKYQRKK" FT RBS complement(157089..157092) FT /note="possible RBS" FT RBS 157252..157255 FT /note="possible RBS" FT CDS 157262..158179 FT /transl_table=11 FT /gene="sitA" FT /gene_synonym="STY2983" FT /product="Iron transport protein, periplasmic-binding FT protein" FT /note="Similar to Salmonella typhimurium SitA, an iron FT transport protein located on centisome 63 pathogenicity FT island TR:Q9XCS2 (EMBL:AF128999) (305 aa) fasta scores: FT E(): 0, 100.0% id in 305 aa and to Yersinia pestis YfeA FT TR:Q56952 (EMBL:U50597) (322 aa) fasta scores: E(): 0, FT 62.2% id in 275 aa" FT /db_xref="GOA:Q9XCS2" FT /db_xref="HSSP:1PSZ" FT /db_xref="InterPro:IPR006127" FT /db_xref="InterPro:IPR006128" FT /db_xref="InterPro:IPR006129" FT /db_xref="UniProtKB/TrEMBL:Q9XCS2" FT /protein_id="CAD05968.1" FT /translation="MTNLHRLKTLLIAGIVAILALSPAYAKEKFKVITTFTVIADMAKN FT VAGDAAEVSSITKPGAEIHEYQPTPGDIKRAQGAQLILANGLNLERWFARFYQHLSGVP FT EVVVSTGVKPMGITEGPYNGKPNPHAWMSAENALIYVDNIRDALVKYDPDNAQIYKQNA FT ERYKAKIRQMADPLRAELEKIPADQRWLVTSEGAFSYLARDNDMKELYLWPINADQQGT FT PKQVRKVIDTIKKHHIPAIFSESTVSDKPARQVARESGAHYGGVLYVDSLSAADGPVPT FT YLDLLRVTTETIVNGINDGLRSQQ" FT misc_feature 157262..197034 FT /note="Salmonella Pathogenicity Island 1. This island FT carries multiple virulence determinants for adhesion and FT entry into cells" FT misc_feature 157286..158155 FT /note="Pfam match to entry PF01297 Lipoprotein_4, Adhesion FT lipoprotein, score 416.80, E-value 2e-121" FT RBS 158165..158169 FT /note="possible RBS" FT CDS 158176..158997 FT /transl_table=11 FT /gene="sitB" FT /gene_synonym="STY2984" FT /product="Iron transport protein, ATP-binding component" FT /note="Similar to Salmonella typhimurium SitB an iron FT transport protein located on centisome 63 pathogenicity FT island TR:Q9XCS1 (EMBL:AF128999) (273 aa) fasta scores: FT E(): 0, 98.9% id in 273 aa, and to Yersinia pestis YfeB FT TR:Q56953 (EMBL:U50597) (296 aa) fasta scores: E(): 0, FT 63.2% id in 266 aa" FT /note="Fasta hit to ZNUC_ECOLI (251 aa), 31% identity in FT 223 aa overlap" FT /note="Fasta hit to FHUC_ECOLI (265 aa), 30% identity in FT 253 aa overlap" FT /note="Fasta hit to GLTL_ECOLI (241 aa), 30% identity in FT 232 aa overlap" FT /note="Fasta hit to TAUB_ECOLI (255 aa), 30% identity in FT 220 aa overlap" FT /note="Paralogue of E. coli fecE (FECE_ECOLI); Fasta hit to FT FECE_ECOLI (255 aa), 32% identity in 237 aa overlap" FT /db_xref="GOA:Q8Z4B0" FT /db_xref="HSSP:1L7V" FT /db_xref="InterPro:IPR003439" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR017871" FT /db_xref="UniProtKB/TrEMBL:Q8Z4B0" FT /protein_id="CAD05969.1" FT /translation="MSQSAITVDQVTVTYRNGHTALRDATFQVPGGSIAALVGVNGSGK FT STLFKALMGFVHLARGDITILQQSVNQALKKNLIAYVPQSEEVDWSFPVLVEDVVMMGR FT YGHMGWLRRPTAHDHACVDAALARVDMQEYRHRQIGELSGGQKKRVFLARAIAQDGQVI FT LLDEPFTGVDVKTEARIIDLLRELRDEGRTMLVSTHNLGSVTEFCDYTVMIKGTVLASG FT PTETTFTAANLELAFSGVLRHIALSGGEEHIITDDERPFISRRVASGGKSS" FT misc_feature 158269..158826 FT /note="Pfam match to entry PF00005 ABC_tran, ABC FT transporter, score 164.40, E-value 1.9e-45" FT misc_feature 158290..158313 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)" FT misc_feature 158599..158643 FT /note="PS00211 ABC transporters family signature" FT RBS 158980..158984 FT /note="possible RBS" FT CDS 158994..159854 FT /transl_table=11 FT /gene="sitC" FT /gene_synonym="STY2985" FT /product="Iron transport protein, inner membrane component" FT /note="Similar to Salmonella typhimurium SitC an iron FT transport protein located on centisome 63 pathogenicity FT island TR:Q9XCS0 (EMBL:AF128999) (286 aa) fasta scores: FT E(): 0, 99.7% id in 286 aa and to Yersinia pestis chelated FT iron transport system membrane protein YfeC SW:YFEC_YERPE FT (Q56954) (294 aa) fasta scores: E(): 0, 66.5% id in 281 aa. FT Contains multiple possible membrane spanning hydrophobic FT domains." FT /db_xref="GOA:Q8Z4A9" FT /db_xref="InterPro:IPR001626" FT /db_xref="UniProtKB/TrEMBL:Q8Z4A9" FT /protein_id="CAD05970.1" FT /translation="MNWLVEPFGYQYMLNAMWVSAMVGGLCAFLSCYLMLKGWSLIGDA FT LSHSIVPGVAGAWMLGLPFSLGAFLSGGLAAGSMLFLNQRSRLKEDAIIGLIFSSFFGV FT GLFMVSLNPMSVNIQTIILGNVLAIAPADITQLAIIGAVSLTILLLKWKDLMVVFFDET FT HARSIGLNPGRLKLLFFTLLSVSTVAALQTVGAFLVICLVVTPGATAWLLTDRFPRLLM FT IAVVIGSLTSFLGAWLSYWLDGATGGIIVVMQTLLFITAFIFAPKHGLLANRRRARLQK FT EPTCS" FT misc_feature 159018..159788 FT /note="Pfam match to entry PF00950 ABC-3, ABC 3 transport FT family, score 364.60, E-value 1.1e-105" FT RBS 159834..159839 FT /note="possible RBS" FT CDS 159845..160693 FT /transl_table=11 FT /gene="sitD" FT /gene_synonym="STY2986" FT /product="Iron transport protein, inner membrane component" FT /note="Similar to Salmonella typhimurium SitD an iron FT transport protein located on centisome 63 pathogenicity FT island TR:Q9XCR9 (EMBL:AF128999) (282 aa) fasta scores: FT E(): 0, 99.3% id in 282 aa, and to Yersinia pestis chelated FT iron transport system membrane protein YfeD SW:YFED_YERPE FT (Q56955) (297 aa) fasta scores: E(): 0, 52.6% id in 266 aa. FT Contains multiple possible membrane spanning hydrophobic FT domains." FT /db_xref="GOA:Q8Z4A8" FT /db_xref="InterPro:IPR001626" FT /db_xref="UniProtKB/TrEMBL:Q8Z4A8" FT /protein_id="CAD05971.1" FT /translation="MFLATLLEPFQFDFMVNALMVSVIVAIPCALLSVFLVLKGWALMG FT DAMSHAVFPGVVLAYIVGIPLAIGAFIAGLFCAIATGYLDDNSRIKRDTVMGIVFSGMF FT GAGLVLYVSIQSEVHLDHILFGDMLGVSLGDIVQTSVIALGIALIIGLKWKDLLLHAFD FT PHQAKASGLNTTLLHYGLLCMIALTIVATLKSVGIILSISLLIAPGAIAILLTRRFARA FT LGLAVSLSVITAFAGVYLSFYLDSAPAPTIVVLFAIVFIAVFIYATWRDRRNEIVPEAQ FT G" FT misc_feature 159875..160645 FT /note="Pfam match to entry PF00950 ABC-3, ABC 3 transport FT family, score 358.80, E-value 5.6e-104" FT CDS 160665..160874 FT /transl_table=11 FT /gene="STY2986a" FT /product="hypothetical protein" FT /note="Previously sequenced as Salmonella typhi FT hypothetical protein TR:O30622 (EMBL:AF013574) (69 aa) FT fasta scores: E(): 4.4e-30, 100.0% id in 69 aa" FT /db_xref="UniProtKB/TrEMBL:O30622" FT /protein_id="CAD05972.1" FT /translation="MKSYQRRKVNSSVQKINTTVVVESHPISVVGQYGKQLSLNFFTTS FT VKISCFTPHVFPVSKFFQSLANPA" FT CDS complement(160970..161725) FT /transl_table=11 FT /gene="sprB" FT /gene_synonym="STY2987" FT /product="possible AraC-family transcriptional regulator" FT /note="Similar to Salmonella typhimurium transcriptional FT regulator SprB found on pathogenicity island 1 TR:Q9XC53 FT (EMBL:AF148689) (251 aa) fasta scores: E(): 0, 99.2% id in FT 251 aa" FT /db_xref="UniProtKB/TrEMBL:Q8Z4A7" FT /protein_id="CAD05973.1" FT /translation="MRNVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLSD FT MPDAGLILALNPHEHVYLFHALQARLQNRKVLVVADRLYYIDRCVLQYFGVMDYVLKDE FT LSCAIRSEREKLRLPEAWLRFCHRPQKKTVAATYAFNAGETPEEVLFNINQYAWWNLPP FT GVTQAKYALLILLSSGHPAIELAKKFGLGTKTVSIYRKKVMYRLGMDSSPLSLFRGLKL FT DAHLQRTAFAHNPAVPDDNCALPIAVGMN" FT CDS complement(162110..162997) FT /transl_table=11 FT /gene="sprA" FT /gene_synonym="hilC" FT /gene_synonym="STY2988" FT /product="possible AraC-family transcriptional regulator" FT /note="Similar to Salmonella typhimurium transcriptional FT regulator SprA or HilC found on pathogenicity island 1 FT TR:Q9R3W3 (EMBL:AF148689) (295 aa) fasta scores: E(): 0, FT 99.3% id in 295 aa" FT /db_xref="GOA:Q8Z4A6" FT /db_xref="InterPro:IPR000005" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR012287" FT /db_xref="InterPro:IPR018060" FT /db_xref="InterPro:IPR018062" FT /db_xref="InterPro:IPR020449" FT /db_xref="UniProtKB/Swiss-Prot:Q8Z4A6" FT /protein_id="CAD05974.1" FT /translation="MVLPSMNKSVEAISNNHLQQPNKFPLINGLADVRDYYVANCLLFK FT LNKGSLRIENEFGEFIEQSALCLFLLEKDQTITLSMSEIEGHIDFSSLEVSYDLMQKFY FT KVFYSTRNYNDRELSLKTKPKYFFHADLLPGMSDTFDSILHGVACPRVCSNVSIDDHDY FT SYFSLMYLISAFVRKPGGFDFLERAIKITTKEKVYNIIISDLTRKWSQAEVAGKLFMSV FT SSLKRKLAAEEVSFSKIYLDARMNQAIKLLRMGAGNISQVATMCGYDTPSYFIAIFKRH FT FKITPLSFMRTMNH" FT misc_feature complement(162119..162376) FT /note="Pfam match to entry PF00165 HTH_AraC, Bacterial FT regulatory helix-turn-helix proteins, araC family, score FT 75.50, E-value 1.1e-18" FT misc_feature complement(162140..162268) FT /note="PS00041 Bacterial regulatory proteins, araC family FT signature" FT CDS complement(163343..163795) FT /transl_table=11 FT /gene="STY2989" FT /product="hypothetical protein found within S. typhi FT pathogenicity island 1" FT /db_xref="UniProtKB/TrEMBL:Q8Z4A5" FT /protein_id="CAD05975.1" FT /translation="MIPGTIPTSYLVPTADTEVTGVVSLSARAAMLNNVDSAPLSNGGD FT VDLYDAFYQRLLALPESASSETLKDSIYQEMNAFKDPKSGDSAFVSFEQQTAMLQNMLA FT KVEPGTHLYEALNGVLVGTMNAQSQMTSWMQEIILSGGENKEAIDW" FT RBS complement(163803..163807) FT /note="possible RBS" FT CDS complement(163811..164482) FT /transl_table=11 FT /gene="orgAb" FT /gene_synonym="STY2990" FT /product="oxygen-regulated invasion protein" FT /product="cell invasion protein" FT /note="Similar to C-terminal half of Salmonella typhimurium FT oxygen-regulated invasion protein OrgA SW:ORGA_SALTY FT (P40823) (412 aa) fasta scores: E(): 0, 99.5% id in 221 aa, FT to all of Shigella sonnei Orf10 TR:Q55290 (EMBL:D50601) FT (231 aa) fasta scores: E(): 6.3e-07, 24.1% id in 170 aa, FT and to Yersinia enterocolitica orf4 TR:Q9KKI5 FT (EMBL:AF005744) (231 aa) fasta scores: E(): 0.008, 22.9% id FT in 205 aa. Note that in the original S. typhimurium FT sequence this CDS is fused to the upstream gene. The WashU FT S. typhimurium sequence has sperate CDS, and these CDSs are FT weakly similar to consecutive CDSs from Shigella sonnei" FT /db_xref="UniProtKB/TrEMBL:Q8Z4A4" FT /protein_id="CAD05976.1" FT /translation="MLKNIPIPSPLSPVEGILIKRKTLERYFSIERLEQQAHQRAKRIL FT REAEEEAKTLRMYAYQEGYEQGMIDALQQVAAYLTDNQTMAWKWMEKIQIYARELFSAA FT VDHPETLLTVLDEWLRDFDKPEGQLFLTLPVNAKKEHQKLMVLLMENWPGTFNLKYHQE FT QRFIMSCGDQIAEFSPEQFVETAVGVIKHHLDELPQDCRTISDNAINALIDEWKTKTQA FT L" FT CDS complement(164439..165017) FT /transl_table=11 FT /gene="orgAa" FT /gene_synonym="STY2991" FT /product="oxygen-regulated invasion protein" FT /product="cell invasion protein" FT /note="Similar to Salmonella typhimurium oxygen-regulated FT invasion protein OrgA SW:ORGA_SALTY (P40823) (412 aa) fasta FT scores: E(): 0, 94.7% id in 189 aa, and to Escherichia coli FT orf_f141 TR:Q46795 (EMBL:U28375) (141 aa) fasta scores: FT E(): 0.00011, 26.2% id in 130 aa, and to Shigella sonnei FT orf9 TR:Q55289 (EMBL:D50601) (188 aa) fasta scores: E(): FT 0.019, 26.4% id in 182 aa. Note that the original S. FT typhimurium sequence has this CDS fused to the downstream FT gene. The WashU S. typhimurium sequence has sperate CDS, FT and these CDSs are weakly similar to consecutive CDSs from FT Shigella sonnei" FT /db_xref="GOA:Q8Z4A3" FT /db_xref="InterPro:IPR013388" FT /db_xref="UniProtKB/TrEMBL:Q8Z4A3" FT /protein_id="CAD05977.1" FT /translation="MNRQPLPIIWQRIIFDPLSYIHPQRLQIAPEMIVRPAARAAANEL FT ILATWRLKNGEKECIQNSLTQLWLRQWRRLPQVAYLLGCHKLRADLARQGALLGLPDWA FT QAFLAMHQGTSLSVCNKAPNHRFLLSVGYAQLNALNEFLPESLAQRFPLLFPPFIEEAL FT KQDAVEMSILLLALQYAQKYPNSVPAFAC" FT CDS complement(165010..165768) FT /transl_table=11 FT /gene="prgK" FT /gene_synonym="STY2992" FT /product="pathogenicity 1 island effector protein" FT /note="Similar to several proteins essential for protein FT secretion by a type III system: Salmonella typhimurium FT protein precursor PrgK required for invasion of epithelial FT cells SW:PRGK_SALTY (P41786) (252 aa) fasta scores: E(): 0, FT 99.6% id in 252 aa and Shigella flexneri lipoprotein MxiJ FT secretion protein SW:MXIJ_SHIFL (Q06081) (241 aa) fasta FT scores: E(): 0, 46.1% id in 243 aa. Contains a possible FT N-terminal signal sequence." FT /db_xref="GOA:Q8Z4A2" FT /db_xref="InterPro:IPR003282" FT /db_xref="InterPro:IPR006182" FT /db_xref="UniProtKB/TrEMBL:Q8Z4A2" FT /protein_id="CAD05978.1" FT /translation="MIRRYLYTFLLVMTLAGCKDKDLLKGLDQEQANEVIAVLQMHNIE FT ANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPRVEIAQMFPADSLVSSPRAEKAR FT LYSAIEQRLEQSLQTMEGVLSARVHISYDIDAGENGRPPKPVHLSALAVYERGSPLAHQ FT ISDIKRFLKNSFADVDYDNISVVLSERSDAQLQAPGTPVKRNSFATSWIVLIILLSVMS FT AGSGVWYYKNHYARNKKGITADDKAKSSNE" FT misc_feature complement(165175..165768) FT /note="Pfam match to entry PF01514 YscJ_FliF, Secretory FT protein of YscJ/FliF family, score 279.40, E-value 4.8e-80" FT misc_feature complement(165715..165747) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site" FT CDS complement(165765..166070) FT /transl_table=11 FT /gene="prgJ" FT /gene_synonym="STY2993" FT /product="pathogenicity 1 island effector protein" FT /note="Similar to several proteins essential for protein FT secretion by a type III system: Salmonella typhimurium FT protein PrgJ required for invasion of epithelial cells FT SW:PRGJ_SALTY (P41785) (101 aa) fasta scores: E(): 0, 98.0% FT id in 101 aa and Shigella flexneri and Shigella sonnei MxiI FT protein mxiI SW:MXII_SHIFL (Q06080) (97 aa) fasta scores: FT E(): 0.00022, 36.1% id in 97 aa" FT /db_xref="UniProtKB/TrEMBL:Q8Z4A1" FT /protein_id="CAD05979.1" FT /translation="MSIATIVPENAVIGQAVNIRPMETDIVSLDDRLLQAFSGSAIATA FT VDKQTITNRIEDPNLVTDPNELAISQEMISDYNLYVSMVSTLTRKGVGAVETLLRS" FT CDS complement(166089..166331) FT /transl_table=11 FT /gene="prgI" FT /gene_synonym="STY2994" FT /product="pathogenicity 1 island effector protein" FT /note="Similar to several proteins essential for protein FT secretion by a type III system: Salmonella typhimurium FT protein PrgI required for invasion of epithelial cells FT SW:PRGI_SALTY (P41784) (80 aa) fasta scores: E(): 4.2e-28, FT 95.0% id in 80 aa and Shigella flexneri, and Shigella FT sonnei MxiH protein SW:MXIH_SHIFL (Q06079) (83 aa) fasta FT scores: E(): 1.6e-16, 68.4% id in 76 aa" FT /db_xref="GOA:Q8Z4A0" FT /db_xref="InterPro:IPR011841" FT /db_xref="UniProtKB/TrEMBL:Q8Z4A0" FT /protein_id="CAD05980.1" FT /translation="MPTSWSGYLDEVSAKFDKGVDNLQTQVTEALDKLAAKPSDPALLA FT AYQSKLSEYNLYRNAQSNTVKVFKDIDAAIIQNFR" FT RBS complement(166339..166344) FT /note="possible RBS" FT CDS complement(166356..167534) FT /transl_table=11 FT /gene="prgH" FT /gene_synonym="STY2995" FT /product="pathogenicity 1 island effector protein" FT /note="Similar to Salmonella typhimurium protein PrgH FT required for invasion of epithelial cells SW:PRGH_SALTY FT (P41783) (392 aa) fasta scores: E(): 0, 99.2% id in 392 aa. FT Contains possible membrane spanning hydrophobic domains." FT /db_xref="InterPro:IPR013387" FT /db_xref="InterPro:IPR019029" FT /db_xref="UniProtKB/TrEMBL:Q8Z499" FT /protein_id="CAD05981.1" FT /translation="METSKEKTITSPGPYIVRLLNSSLNGCEFPLLTGRTLFVVGQSDA FT LTASGQLPDIPADSFFIPLDHGGVNFEIQVDTDATEIILHELKEGNPESRSVQLNTPIQ FT VGELLILIRPESEPWVPEQPEKLETSAKKNEPRFKNGIVAALAGFFILGIGTVGTLWIL FT NSPQRQAAELDSLLGQEKERFQVLPGRDKMLYVAAQNERDTLWARQVLARGDYDKNARV FT INENEENKRISTWLDTYYPQLAYYRLHFDEPRKPVFWLSRQRNTMSKKELEVLSQKLRA FT LMPYADSVNITLMDDVTAAGQAEAGLKQQALPYSRRNHKGGVTFVIQGALDDVEILRAR FT QFVDSYYRTWGGRYVQFAIELKDDWLKGRSFQYGAEGYIKMSPGHWYFPSPL" FT CDS 167850..168779 FT /transl_table=11 FT /gene="STY2996" FT /product="AraC-family transcriptional regulator" FT /note="Similar to several from Salmonella typhimurium FT including: TR:Q9X5C3 (EMBL:AF124398) HilD transcriptional FT regulator (309 aa) fasta scores: E(): 0, 99.4% id in 309 FT aa and SW:YGBG_SALTY (P41782) hypothetical 17.2 kDa protein FT found upstream of prgH fasta scores: E(): 0, 87.9% id in FT 132 aa" FT /db_xref="GOA:Q8Z498" FT /db_xref="InterPro:IPR000005" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR012287" FT /db_xref="InterPro:IPR018060" FT /db_xref="InterPro:IPR018062" FT /db_xref="InterPro:IPR020449" FT /db_xref="UniProtKB/TrEMBL:Q8Z498" FT /protein_id="CAD05982.1" FT /translation="MENVTFVSNSHQRPAADNLQKLKSLLTNTQQQIKSQTQQVTIKNL FT YVSSFTLVCFRSGKLTISNNHDTIYCDEPGMLVLKKEQVVNVTLEEVNGHMDFDILEIP FT TQRLGALYALIPNEQQTKMAVPTEKAQKIFYTPDFPARREVFEHLKTAFSCTKDTSKGC FT SNCNNKSCIENEELIPYFLLFLLTAFLRLPESYEIILSSAQITLKKRVYNIISSSPSRQ FT WKLTDVADHIFMSTSTLKRKLAEEGTSFSDIYLSARMNQAAKLLRIGNHNVNAVALKCG FT YDSTSYFIQCFKKYFKTTPSTFIKMANH" FT misc_feature 168513..168770 FT /note="Pfam match to entry PF00165 HTH_AraC, Bacterial FT regulatory helix-turn-helix proteins, araC family, score FT 103.60, E-value 3.7e-27" FT misc_feature 168621..168749 FT /note="PS00041 Bacterial regulatory proteins, araC family FT signature" FT CDS 169866..171527 FT /transl_table=11 FT /gene="iagA" FT /gene_synonym="hilA" FT /gene_synonym="STY2999" FT /product="invasion protein regulator" FT /note="Previously sequenced Salmonella typhi invasion FT protein IagA which activates expression of cell invasion FT genes SW:IAGA_SALTI (P43016) (553 aa) fasta scores: E(): 0, FT 99.8% id in 553 aa" FT /db_xref="GOA:P43016" FT /db_xref="InterPro:IPR001867" FT /db_xref="InterPro:IPR011990" FT /db_xref="InterPro:IPR011991" FT /db_xref="InterPro:IPR013026" FT /db_xref="InterPro:IPR013105" FT /db_xref="InterPro:IPR016032" FT /db_xref="InterPro:IPR019734" FT /db_xref="UniProtKB/Swiss-Prot:P43016" FT /protein_id="CAD05983.1" FT /translation="MPHFNPVPVSNKKFVFDDFILNMDGSLLRSEKKVNIPPKEYAVLV FT ILLEAAGKIVSKNTLLDQVWGDAEVNEESLTRCIYALRRILSEDKEHRYIETLYGQGYR FT FNRPVVVVSPPAPQPTTHTLAILPFQMQDQVQSESLHYSIVKGLSQYAPFGLSVLPVTI FT TKNCRSVKDILELMDQLRPDYYISGQMIPDGNDNIVQIEIVRVKGYHLLHQESIKLIEH FT QPASLLQNKIANLLLRCIPGLRWDTKQISELNSIDSTMVYLRGKHELNQYTPYSLQQAL FT KLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA FT LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECL FT KLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHE FT LARKLTKEISTQEITGLIAVNLLYAEYCQNSERALPTIREFLESEQRIDNNPGLLPLVL FT VAHGEAIAEKMWNKFKNEDNIWFKRWKQDPRLIKLR" FT misc_feature 169959..170171 FT /note="Pfam match to entry PF00486 trans_reg_C, FT Transcriptional regulatory protein, C terminal, score FT 95.40, E-value 3.1e-27" FT RBS 171537..171540 FT /note="possible RBS" FT CDS 171545..172027 FT /transl_table=11 FT /gene="iagB" FT /gene_synonym="STY3000" FT /product="cell invasion protein" FT /note="Previously characterised Salmonella typhi invasion FT protein IagB SW:IAGB_SALTI (P43018) (160 aa) fasta scores: FT E(): 0, 100.0% id in 160 aa. Contains a possible N-terminal FT signal sequence" FT /note="Paralogue of E. coli Q46790; Fasta hit to Q46790 FT (138 aa), 40% identity in 128 aa overlap" FT /db_xref="GOA:P43018" FT /db_xref="InterPro:IPR008258" FT /db_xref="UniProtKB/Swiss-Prot:P43018" FT /protein_id="CAD05984.1" FT /translation="MHYFFIIVIWLLSINTAWADCWLQAEKMFNIESELLYAIAQQESA FT MKPGAIGHNRDGSTDLGLMQINSFHMKRLKKMGISEKQLLQDPCISVIVGASILSDMMK FT IYGFSWEAVGAYNAGTSPKRSDIRKRYAKKIWENYRKLKEMSAEEKNKRLSIAVNK" FT misc_feature 171602..171961 FT /note="Pfam match to entry PF01464 SLT, Transglycosylase FT SLT domain, score 180.10, E-value 3.6e-50" FT CDS complement(172081..173712) FT /transl_table=11 FT /gene="stpA" FT /gene_synonym="stpP" FT /gene_synonym="STY3001" FT /product="tyrosine phosphatase (associated with virulence)" FT /note="Previously characterised Salmonella typhi StpA a FT protein related to both Yersinia YopE cytotoxin and YopH FT tyrosine phosphatase TR:P74851 (EMBL:X92546) (543 aa) fasta FT scores: E(): 0, 100.0% id in 543 aa. Also higly similar to FT Salmonella typhimurium protein tyrosine phosphatase SptP FT TR:P74873 (EMBL:U63293) (543 aa) fasta scores: E(): 0, FT 94.3% id in 543 aa" FT /db_xref="GOA:P74851" FT /db_xref="InterPro:IPR000242" FT /db_xref="InterPro:IPR000387" FT /db_xref="InterPro:IPR003546" FT /db_xref="InterPro:IPR011070" FT /db_xref="InterPro:IPR014773" FT /db_xref="InterPro:IPR015203" FT /db_xref="InterPro:IPR016130" FT /db_xref="UniProtKB/Swiss-Prot:P74851" FT /protein_id="CAD05985.1" FT /translation="MLRYDERKLNNLTLSSFSKSGVSSDTRLYIAKENTDKAYVAPEKF FT SSKVLTWLGKMPLFKNTEVVQKHTENIRVQNQKILQTFLQALTEKYGEKAVNNALYMSS FT INMNKPLTQRLVVQITECVKGADGGFINLIKNKDNVGVMNAALVIKGGDTKVTEQNNDV FT GAESKQPLLDIALKGLKRTIPQLEQMDGNSLRENFQEMASGNGPLRSLMTNLQSLNKIP FT EAKQLNDYVTTLKNIQIGADRFSQWGTCGGEVERWIDKASTHELTQAVKKIHVIAKELK FT NVTAELEKIKAGASMPQTMSGPTLGLARFAVSSIPINQQTQVKLSDGMPVPVNTLTFDG FT KPVALAGSCPKNTPDALEAHMKMLLEKECSCLVVLTSEDQMQAKQLPAYFRGSYTFGEV FT HTNSQKVSSASQGGAIDQYNMQLSCGEKRYTIPVLHVKNWPDHQPLPSTDQLEYLADRV FT KNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNSRN FT NRMLEDASQFVQLKAMQAQLLMTTAS" FT misc_feature complement(172108..172797) FT /note="Pfam match to entry PF00102 Y_phosphatase, FT Protein-tyrosine phosphatase, score -44.80, E-value FT 2.3e-07" FT misc_feature complement(172240..172278) FT /note="PS00383 Tyrosine specific protein phosphatases FT active site" FT CDS complement(173699..174049) FT /transl_table=11 FT /gene="sicP" FT /gene_synonym="STY3002" FT /product="chaperone (associated with virulence)" FT /note="Similar to Salmonella typhimurium SicP a molecular FT chaperone for the secretion of the tyrosine phosphatase FT SptP (StpA in S. typhi) TR:O85300 (EMBL:AF060857) (116 aa) FT fasta scores: E(): 0, 96.6% id in 116 aa" FT /db_xref="GOA:Q8Z497" FT /db_xref="UniProtKB/Swiss-Prot:Q8Z497" FT /protein_id="CAD05986.1" FT /translation="MGLPLTFDDNNQCLLLLDSDIFTSIEAKDDIWLLNGMIIPLSPVC FT GDSIWRQIMVINGELAANNEGTLAYIDAAETLLFIHAITDLTNIYHIISQLESFVNKQE FT ALKNILQEYAKV" FT CDS complement(174118..174378) FT /transl_table=11 FT /gene="STY3003" FT /product="doubtful CDS found within S. typhi pathogenicity FT island" FT /note="unknown function" FT /db_xref="UniProtKB/TrEMBL:Q8Z496" FT /protein_id="CAD05987.1" FT /translation="MKIITHVVPGSGMAAIYDDIADSSRFVIKGKLRHVENDPKELLIC FT VPMRSEWLFYWIKGEKYCARRWARKNIKTLCNQIKFEEAIL" FT CDS complement(174422..174670) FT /transl_table=11 FT /gene="sipF" FT /gene_synonym="STY3004" FT /product="probable acyl carrier protein" FT /note="Previously sequenced Salmonella typhi SipF TR:P74850 FT (EMBL:X92546) (82 aa) fasta scores: E(): 1.2e-32, 98.8% id FT in 82 aa. Also highly similar to Synechocystis sp acyl FT carrier protein AcpP SW:ACP_SYNY3 (P20804; P73284) (77 aa) FT fasta scores: E(): 7.7e-06, 38.0% id in 79 aa" FT /db_xref="GOA:Q8Z495" FT /db_xref="InterPro:IPR006163" FT /db_xref="InterPro:IPR009081" FT /db_xref="UniProtKB/Swiss-Prot:Q8Z495" FT /protein_id="CAD05988.1" FT /translation="MNMDIEARVKKVITSCIAVDVDSINGQTHLVEDLYADSLDLIDIV FT FGLSEEFDISCNENDLPDMTTFADICRVVKKSLESRV" FT misc_feature complement(174449..174652) FT /note="Pfam match to entry PF00550 pp-binding, FT Phosphopantetheine attachment site, score 22.00, E-value FT 0.00018" FT CDS complement(174689..176746) FT /transl_table=11 FT /gene="sipA" FT /gene_synonym="sspA" FT /gene_synonym="STY3005" FT /product="pathogenicity island 1 effector protein (function FT unknown)" FT /note="Previously partially sequenced Salmonella typhi SipA FT TR:P74849 (EMBL:X92546) (450 aa) fasta scores: E(): 0, FT 100.0% id in 450 aa. Also highly similar to Salmonella FT typhimurium SipA TR:Q56034 (EMBL:U40013) (684 aa) fasta FT scores: E(): 0, 95.5% id in 685 aa and Shigella flexneri 70 FT kDa antigen IpaA assiciated with entry into epithelial FT cells SW:IPAA_SHIFL (P18010) (633 aa) fasta scores: E(): FT 5.5e-18, 27.3% id in 527 aa" FT /db_xref="GOA:P74849" FT /db_xref="InterPro:IPR015138" FT /db_xref="UniProtKB/Swiss-Prot:P74849" FT /protein_id="CAD05989.1" FT /translation="MVTSVRTQPPVIMPGMQTEIKTQATNLAANLSAVRESATATLSGE FT IKGQQLEDFPALIKQASLDALFKCGKDAEALKEVFTNSNNVAGKKAIMEFAGLFRSALN FT ATSDSPEAKTLLMKVGAEYTAQIIKDGLKEKSAFGPWLPETKKAEAKLENLEKQLLDII FT KNNTGGELSKLSTNLVMQEVMPYIASCIEHNFGCTLDPLTRSSLTQLVDKAAAKAVEAL FT DMCHQKLTQEQGTSVGREARHLEMQTLIPLLLRNVFAQIPADKLPDPKIPEPAAGPVPD FT GGKKAEPTGINININIDSSNHSVDNSKHINNSRSHVDNSQRHIDNSNHDNSRKTIDNSR FT TFIDNSQRHGESHHSTNSSNVSHSHSRVDSTTHQTETAHSASTGTIDHGIAGKIDVTAH FT ATAEAVTNSSSESKDGKVVTSEKGTTGETTSFDEVDGVTSKSIIGKPLQATVHGVDDNK FT QQSQTAEIVNVKPLASQLAGVENVKIDTLQSDSTVITGNKAGTTDNDNSQTDKTGPFSG FT LKFKQNSFLSTVPSVTNMHSIHFNAREAFLGVIRKALEPDASTPFPVRRAFDGLRGEIL FT PNDTIKSAALKAQCSDIDKHPELKAKMETLKEVITHHPQKEKLAEIALQFAREAGLTRQ FT KGETDYVLSNVLDGLIGDGSWRAGPAYESYLNKPGVDRVITTVDGLHMQR" FT CDS complement(176765..177787) FT /transl_table=11 FT /gene="sipD" FT /gene_synonym="sspD" FT /gene_synonym="STY3006" FT /product="pathogenicity island 1 effector protein" FT /note="Previously sequenced Salmonella typhi SipD TR:Q56136 FT (EMBL:X82670) (339 aa) fasta scores: E(): 0, 96.2% id in FT 340 aa. Also highly similar to Shigella flexneri 36 kDa FT membrane antigenic protein associated with virulence IpaD FT SW:IPAD_SHIFL (P18013) (332 aa) fasta scores: E(): 2.3e-26, FT 35.3% id in 346 aa and to Homo sapiens nuclear pore complex FT protein SW:N214_HUMAN (P35658) (2090 aa) fasta scores: FT E(): 1.6, 25.3% id in 221 aa" FT /db_xref="GOA:Q56136" FT /db_xref="InterPro:IPR009483" FT /db_xref="InterPro:IPR013386" FT /db_xref="UniProtKB/Swiss-Prot:Q56136" FT /protein_id="CAD05990.1" FT /translation="MLNIQNYSASPHPGIVAERPQTPSASEHAEIAVVPSTTEHRGTDI FT ISLSQAATKIQQAQQTLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQNEN FT LRSTFSAPTSALFSASPMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDF FT YQAFSDILSKMGGWLSPGKDGNTIKLNVDSLKSEISSLINKYTQINKNTILFPSQTGSG FT MTTATKAEAEQWIKELNLPDSCLKASGSGYVVLVDTGPLSKMVSDLNGIGSGSALELDN FT AKYQAWQSGFKAQEENLKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSLETAKSFLQG FT " FT CDS complement(177857..179086) FT /transl_table=11 FT /gene="sipC" FT /gene_synonym="sspC" FT /gene_synonym="STY3007" FT /product="pathogenicity island 1 effector protein" FT /note="Similar to Salmonella typhi SipC TR:Q56135 FT (EMBL:X82670) (409 aa) fasta scores: E(): 0, 100.0% id in FT 409 aa and to Shigella flexneri 42 kDa membrane antigen FT precursor ipaC SW:IPAC_SHIFL (P18012) (382 aa) fasta FT scores: E(): 5.7e-11, 31.4% id in 398 aa" FT /db_xref="GOA:Q56135" FT /db_xref="InterPro:IPR005427" FT /db_xref="UniProtKB/Swiss-Prot:Q56135" FT /protein_id="CAD05991.1" FT /translation="MLISNVGINPAAYLNNHSVENSSQTASQSVSAKDILNSIGISSSK FT VSDLGLSPTLSAPAPGVLTQTPGTITSFLKASIQNTDMNQDLNALANNVTTKANEVVQT FT QLREQQAEVGKFFDISGMSSSAVALLAAANTLMLTLNQADSKLSGKLSLVSFDAAKTTA FT SSMMREGMNALSGSISQSALQLGITGVGAKLEYKGLQNERGALKHNAAKIDKLTTESHS FT IKNVLNGQNSVKLGAEGVDSLKSLNMKKTGTDATKNLNDATLKSNAGTSATESLGIKNS FT NKQISPEHQAILSKRLESVESDIRLEQNTMDMTRIDARKMQMTGDLIMKNSVTVGGIAG FT ASRQYAATQERSEQQISQVNNRVASTASDEARESSRKSTSLIQEMLKTMESINQSKASA FT LAAIAGNIRA" FT CDS complement(179114..180895) FT /transl_table=11 FT /gene="sipB" FT /gene_synonym="sspB" FT /gene_synonym="STY3008" FT /product="pathogenicity island 1 effector protein" FT /note="Previously sequenced Salmonella typhi SipB TR:Q56134 FT (EMBL:X82670) (593 aa) fasta scores: E(): 0, 100.0% id in FT 593 aa. Also highly similar to Shigella flexneri 62 kDa FT membrane antigen ipaB SW:IPAB_SHIFL (P18011) (580 aa) fasta FT scores: E(): 0, 41.5% id in 561 aa. Contains possible FT membrane spanning hydrophobic domains." FT /db_xref="GOA:Q56134" FT /db_xref="InterPro:IPR003895" FT /db_xref="UniProtKB/Swiss-Prot:Q56134" FT /protein_id="CAD05992.1" FT /translation="MVNDASSISRSGYTQNPRLAEAAFEGVRKNTDFLKAADKAFKDVV FT ATKAGDLKAGTKSGESAINTVGLKPPTDAAREKLSSEGQLTLLLGKLMTLLGDVSLSQL FT ESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAAAKK FT LTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKATDATVKAGTDAKAKAEK FT ADNILTKFQGTANAASQNQVSQGEQDNLSNVARLTMLMAMFIEIVGKNTEESLQNDLAL FT FNALQEGRQAEMEKKSAEFQEETRKAEETNRIMGCIGKVLGALLTIVSVVAAVFTGGAS FT LALAAVGLAVMVADEIVKAATGVSFIQQALNPIMEHVLKPLMELIGKAITKALEGLGVD FT KKTAEMAGSIVGAIVAAIAMVAVIVVVAVVGKGAAAKLGNALSKMMGETIKKLVPNVLK FT QLAQNGSKLFTQGMQRITSGLGNVGSKMGLQTNALSKELVGNTLNKVALGMEVTNTAAQ FT SAGGVAEGVFIKNASEALADFMLARFAMDQIQQWLKQSVEIFGENQKVTAELQKAMSSA FT VQQNADASRFILRQSRA" FT CDS complement(180898..181395) FT /transl_table=11 FT /gene="spaT" FT /gene_synonym="STY3009" FT /product="unknown function" FT /note="Previously sequenced Salmonella typhi spaT TR:Q57260 FT (EMBL:X82670) (165 aa) fasta scores: E(): 0, 100.0% id in FT 165 aa. Also highly similar to proteins found within cell FT invasion gene clusters in: Shigella flexneri ippI FT SW:IPPI_SHIFL (P18008) (155 aa) fasta scores: E(): 0, 60.1% FT id in 148 aa and Salmonella typhimurium SpaT (fragment) FT SW:SPAT_SALTY (P40703) (32 aa) fasta scores: E(): 1.7e-08, FT 100.0% id in 32 aa" FT /note="Orthologue of E. coli YGEG_ECOLI; Fasta hit to FT YGEG_ECOLI (163 aa), 37% identity in 147 aa overlap" FT /db_xref="GOA:P69065" FT /db_xref="InterPro:IPR005415" FT /db_xref="InterPro:IPR011716" FT /db_xref="InterPro:IPR011990" FT /db_xref="InterPro:IPR016379" FT /db_xref="UniProtKB/Swiss-Prot:P69065" FT /protein_id="CAD05993.1" FT /translation="MDYQNNVSEERVAEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAY FT EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND FT YRPVFFTGQCQLLMRKAAKARQCFELVNERTEDESLRAKALVYLEALKTAETEQHSEQE FT KE" FT CDS complement(181533..182603) FT /transl_table=11 FT /gene="spaS" FT /gene_synonym="STY3010" FT /product="secretory protein (associated with virulence)" FT /note="Similar to Salmonella typhimurium surface FT presentation of antigens protein SpaS SW:SPAS_SALTY FT (P40702) (356 aa) fasta scores: E(): 0, 99.4% id in 356 aa. FT Contains possible membrane spanning hydrophobic domains." FT /db_xref="GOA:Q8Z492" FT /db_xref="InterPro:IPR006135" FT /db_xref="InterPro:IPR006307" FT /db_xref="UniProtKB/TrEMBL:Q8Z492" FT /protein_id="CAD05994.1" FT /translation="MSSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVSY FT GSFNEFMGIIKIIIADNFDQSMADYSLAVFGIGLKYLIPFMLLCLVCSALPALLQAGFV FT LATEALKPNLSALNPVEGAKKLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEIFSQ FT LNGNVVDIAVIWRELLLALVLTCLACALIVLLLDAIAEYFLTMKDMKMDKEEVKREMKE FT QEGNPEVKSKRREVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIPMISVY FT ETNQRALAVRAYAEKVGVPVIVDIKLARSLFKTHRRYDLVSLEEIDEVLRLLVWLEEVE FT NAGKDVIQPQENEVRH" FT misc_feature complement(181593..182603) FT /note="Pfam match to entry PF01312 Bac_export_2, FlhB HrpN FT YscU SpaS Family, score 561.50, E-value 5.4e-165" FT CDS complement(182590..183381) FT /transl_table=11 FT /gene="spaR" FT /gene_synonym="STY3011" FT /product="secretory protein (associated with virulence)" FT /note="Highly similar to Salmonella typhimurium surface FT presentation of antigens protein SpaR SW:SPAR_SALTY FT (P40701) (263 aa) fasta scores: E(): 0, 99.2% id in 263 aa FT and to Shigella flexneri SpaR SW:SPAR_SHIFL (P40706) (256 FT aa) fasta scores: E(): 0, 49.4% id in 235 aa. Contains FT possible membrane spanning hydrophobic domains." FT /db_xref="GOA:Q8Z491" FT /db_xref="InterPro:IPR002010" FT /db_xref="InterPro:IPR006304" FT /db_xref="UniProtKB/TrEMBL:Q8Z491" FT /protein_id="CAD05995.1" FT /translation="MLYALYFEIHHLVASAALGFARVAPIFFFLPFLNSGVLSGAPRNA FT IIILVALGVWPHALNEAPPFLSVAMIPLVLQEAAVGVMLGCLLSWPFWVMHALGCIIDN FT QRGATLSSSIDPANGIDTSEMANFLNMFAAVVYLQNGGLVTMVDVLNKSYQLCDPMNEC FT TPSLPPLLTFINQVAQNALVLASPVVLVLLLSEVFLGLLSRFAPQMNAFAISLTVKSGI FT AVLIMLLYFSPVLPDNVPRLSFQATGLSSWFYERGATHVLE" FT misc_feature complement(182632..183363) FT /note="Pfam match to entry PF01311 Bac_export_1, Bacterial FT export proteins, family 1, score 372.80, E-value 3.5e-108" FT CDS complement(183385..183645) FT /transl_table=11 FT /gene="spaQ" FT /gene_synonym="STY3012" FT /product="secretory protein (associated with virulence)" FT /note="Previously sequenced Salmonella typhi spaQ TR:Q57533 FT (EMBL:U29346) (86 aa) fasta scores: E(): 7.5e-31, 100.0% id FT in 86 aa. Also highly similar to Salmonella typhimurium FT surface presentation of antigens protein SpaQ SW:SPAQ_SALTY FT (P40704) (82 aa) fasta scores: E(): 9.8e-29, 98.8% id in 82 FT aa. Contains possible membrane spanning hydrophobic FT domains." FT /db_xref="GOA:P0A1L8" FT /db_xref="InterPro:IPR002191" FT /db_xref="InterPro:IPR006306" FT /db_xref="UniProtKB/Swiss-Prot:P0A1L8" FT /protein_id="CAD05996.1" FT /translation="MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQEQ FT TLPFGIKLLGVCLCLFLLSGWYGEVLLSYGRQVIFLALAKG" FT misc_feature complement(183415..183642) FT /note="Pfam match to entry PF01313 Bac_export_3, Bacterial FT export proteins, family 3, score 152.20, E-value 9.2e-42" FT misc_feature complement(183586..183636) FT /note="PS00888 Cyclic nucleotide-binding domain signature FT 1" FT CDS complement(183671..184345) FT /transl_table=11 FT /gene="spaP" FT /gene_synonym="STY3013" FT /product="secretory protein (associated with virulence)" FT /note="Previously sequenced Salmonella typhi surface FT presentation of antigens protein SpaP SW:SPAP_SALTI FT (Q56023) (224 aa) fasta scores: E(): 0, 100.0% id in 224 FT aa. Also similar to many others e.g. Shigella flexneri FT SW:SPAP_SHIFL (P35529) (216 aa) fasta scores: E(): 0, 61.3% FT id in 222 aa. Contains possible membrane spanning FT hydrophobic domains." FT /note="Paralogue of E. coli fliP (FLIP_ECOLI); Fasta hit to FT FLIP_ECOLI (245 aa), 35% identity in 220 aa overlap" FT /db_xref="GOA:Q56023" FT /db_xref="InterPro:IPR005773" FT /db_xref="InterPro:IPR005838" FT /db_xref="UniProtKB/Swiss-Prot:Q56023" FT /protein_id="CAD05997.1" FT /translation="MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQQ FT IPSNMTLNSVALLLSMFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDYLI FT KYSDRELVQFFENAQLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFKIGF FT YLYLPFVVVDLVVSSVLLALGMMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQYMDI FT AT" FT misc_feature complement(183698..184318) FT /note="Pfam match to entry PF00813 FliP, FliP family, score FT 422.00, E-value 5.6e-123" FT misc_feature complement(183722..183760) FT /note="PS01061 Flagella transport protein fliP family FT signature 2" FT misc_feature complement(183857..183904) FT /note="PS01060 Flagella transport protein fliP family FT signature 1" FT CDS complement(184335..185246) FT /transl_table=11 FT /gene="spaO" FT /gene_synonym="STY3014" FT /product="surface presentation of antigens protein FT (associated with type III secretion and virulence)" FT /note="Previously sequenced Salmonella typhi surface FT presentation of antigens protein SpaO SW:SPAO_SALTI FT (Q56022) (303 aa) fasta scores: E(): 0, 100.0% id in 303 FT aa" FT /db_xref="GOA:Q56022" FT /db_xref="InterPro:IPR001543" FT /db_xref="InterPro:IPR003283" FT /db_xref="InterPro:IPR013385" FT /db_xref="UniProtKB/Swiss-Prot:Q56022" FT /protein_id="CAD05998.1" FT /translation="MSLRVRQIDRREWLLAQTATECQRHGREATLEYPTRQGMWVRLSD FT AEKRWSAWIKPGGWLEHVSPALAGAAVSAGAEHLVVPWLAATERPFELPVPHLSCRRLC FT VENPVPGSALPEGKLLHIMSDRGGLWFEHLPELPAVGGGRPKMLRWPLRFVIGSSDTQR FT SLLGRIGIGDVLLIRTSRAEVYCYAKKLGHFNRVEGGIIVETLDIQHIEEENNTTETAE FT TLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNVELNVEIMANGVLLGNGEL FT VQMNDTLGVEIHEWLSESGNGE" FT misc_feature complement(184350..184580) FT /note="Pfam match to entry PF01052 SpoA, Surface FT presentation of antigens (SPOA) protein, score 98.10, FT E-value 1.7e-25" FT CDS complement(185246..186256) FT /transl_table=11 FT /gene="spaN" FT /gene_synonym="invJ" FT /gene_synonym="STY3015" FT /product="surface presentation of antigens protein FT (associated with type III secretion and virulence)" FT /note="Highly similar to Salmonella typhimurium surface FT presentation of antigens protein SpaN SW:SPAN_SALTY FT (P40613) (336 aa) fasta scores: E(): 0, 98.2% id in 336 aa" FT /db_xref="InterPro:IPR003066" FT /db_xref="UniProtKB/TrEMBL:Q54044" FT /protein_id="CAD05999.1" FT /translation="MGDVSAVSSSGNILLPQQDEVGGLSEALKKTVEKHKTEYSGDKKD FT RDYGDAFVMHKETALPVLLAAWRHCAPAKSEHHNGNVSGLHHNGKGELRIAEKLLKVTA FT EKSVGLISAEAKVDKSAALLSPKNRPLESVSGKKLSADLKAVESVSEVTDNATGISDDN FT IKALPGDNKAIAGEGVRKEGAPLARDVAPARMAAANTGKPDDKDHKKVKDVSQLPLQPT FT TIADLSQLTGGDEKMPLAAQSKPMMTIFPTADGVKGEDSSLTYRFQRWGNDYSVNIQAR FT QAGEFSLIPSNTQVEHRLHDQWQNGNPQRWHLTRDDQQNPQQQQHRQQSGEEDDA" FT CDS complement(186256..186699) FT /transl_table=11 FT /gene="spaM" FT /gene_synonym="STY3016" FT /product="secretory protein (associated with virulence)" FT /note="Similar to Salmonella typhimurium surface FT presentation of antigens protein spaM SW:SPAM_SALTY FT (P40612) (147 aa) fasta scores: E(): 0, 99.3% id in 147 aa. FT Contains possible coiled-coils between residues 75..110." FT /db_xref="InterPro:IPR002954" FT /db_xref="UniProtKB/TrEMBL:Q54043" FT /protein_id="CAD06000.1" FT /translation="MHSLTRIKVLQRRCTVFHSQCESILLRYQDEDRGLQAEEEAILEQ FT IAGLKLLLDTLRAENRQLSREEIYTLLRKQSIVRRQIKDLELQIIQIQEKRSELEKKRE FT EFQKKSKYWLRKEGNYQRWIIRQKRHYIQREIQQEEAESEEII" FT misc_feature complement(186259..186699) FT /note="Pfam match to entry PF02090 SPAM, Salmonella surface FT presentation of antigen gene type M protein, score 398.10, FT E-value 8.8e-116" FT CDS complement(186677..187972) FT /transl_table=11 FT /gene="spaI" FT /gene_synonym="STY3017" FT /product="secretory apparatus ATP synthase (associated with FT virulence)" FT /EC_number="3.6.1.34" FT /note="Highly similar to many including: Salmonella FT typhimurium probable ATP synthase spaI SW:SPAL_SALTY FT (P39444) (432 aa) fasta scores: E(): 0, 90.1% id in 433 aa FT and to Yersinia pestis yops secretion ATPase TR:O68695 FT (EMBL:AF053946) (439 aa) fasta scores: E(): 0, 47.0% id in FT 419 aa" FT /note="Fasta hit to ATPB_ECOLI (459 aa), 30% identity in FT 437 aa overlap" FT /note="Paralogue of E. coli fliI (FLII_ECOLI); Fasta hit to FT FLII_ECOLI (457 aa), 38% identity in 422 aa overlap" FT /db_xref="GOA:P0A1C0" FT /db_xref="InterPro:IPR000194" FT /db_xref="InterPro:IPR003593" FT /db_xref="InterPro:IPR004100" FT /db_xref="InterPro:IPR005714" FT /db_xref="InterPro:IPR020003" FT /db_xref="UniProtKB/Swiss-Prot:P0A1C0" FT /protein_id="CAD06001.1" FT /translation="MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQV FT VARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKIVE FT RFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFASAGC FT GKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVD FT RCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPASVFDN FT LPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAGQGHYPA FT IDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENIDNDRAMQM FT RDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN" FT misc_feature complement(186926..187927) FT /note="Pfam match to entry PF00006 ATP-synt_ab, ATP FT synthase alpha/beta family, score 397.60, E-value 1.2e-115" FT misc_feature complement(186929..186958) FT /note="PS00152 ATP synthase alpha and beta subunits FT signature" FT misc_feature complement(187475..187498) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)" FT CDS complement(187969..188376) FT /transl_table=11 FT /gene="spak" FT /gene_synonym="STY3018" FT /product="secretory protein (associated with virulence)" FT /note="Highly similar to Salmonella typhimurium surface FT presentation of antigens protein SpaK SW:SPAK_SALTY FT (P39443) (134 aa) fasta scores: E(): 0, 99.3% id in 135 aa" FT /db_xref="GOA:P0A1N1" FT /db_xref="InterPro:IPR003065" FT /db_xref="UniProtKB/Swiss-Prot:P0A1N1" FT /protein_id="CAD06002.1" FT /translation="MQHLDIAELVRSALEVSGCDPSLIGGIDSHSTIVLDLFALPSICI FT SVKDDDVWIWAQLGADSMVVLQQRAYEILMTIMEGCHFARGGQLLLGEQNGELTLKALV FT HPDFLSDGEKFSTALNGFYNYLEVFSRSLMR" FT CDS complement(188400..190457) FT /transl_table=11 FT /gene="invA" FT /gene_synonym="STY3019" FT /product="possible secretory protein (associated with FT virulence)" FT /note="Similar to Salmonella typhimurium invasion protein FT InvA SW:INVA_SALTY (P35657) (665 aa) fasta scores: E(): 0, FT 99.7% id in 665 aa and to Shigella flexneri VirH FT SW:MXIA_SHIFL (P35533; Q55295) (686 aa) fasta scores: E(): FT 0, 64.3% id in 687 aa. Contains multiple possible membrane FT spanning hydrophobic domains. Codon 21 offers an FT alternative possible translational start site." FT /note="Fasta hit to FHIA_ECOLI (579 aa), 31% identity in FT 580 aa overlap" FT /note="Paralogue of E. coli flhA (FLHA_ECOLI); Fasta hit to FT FLHA_ECOLI (692 aa), 34% identity in 676 aa overlap" FT /db_xref="GOA:P0A1I4" FT /db_xref="InterPro:IPR001712" FT /db_xref="InterPro:IPR006302" FT /db_xref="UniProtKB/Swiss-Prot:P0A1I4" FT /protein_id="CAD06003.1" FT /translation="MLLSLLNSARLRPELLILVLMVMIISMFVIPLPTYLVDFLIALNI FT VLAILVFMGSFYIDRILSFSTFPAVLLITTLFRLALSISTSRLILIEADAGEIIATFGQ FT FVIGDSLAVGFVVFSIVTVVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLKAGI FT IDADAARERRSVLERESQLYGSFDGAMKFIKGDAIAGIIIIFVNFIGGISVGMTRHGMD FT LSSALSTYTMLTIGDGLVAQIPALLIAISAGFIVTRVNGDSDNMGRNIMTQLLNNPFVL FT VVTAILTISMGTLPGFPLPVFVILSVVLSVLFYFKFREAKRSAAKPKTSKGEQPLSIEE FT KEGSSLGLIGDLDKVSTETVPLILLVPKSRREDLEKAQLAERLRSQFFIDYGVRLPEVL FT LRDGEGLDDNSIVLLINEIRVEQFTVYFDLMRVVNYSDEVVSFGINPTIHQQGSSQYFW FT VTHEEGEKLRELGYVLRNALDELYHCLAVTLARNVNEYFGIQETKHMLDQLEAKFPDLL FT KEVLRHATVQRISEVLQRLLSERVSVRNMKLIMEALALWAPREKDVINLVEHIRGAMAR FT YICHKFANGGELRAVMVSAEVEDVIRKGIRQTSGSTFLSLDPEASANLMDLITLKLDDL FT LIAHKDLVLLTSVDVRRFIKKMIEGRFPDLEVLSFGEIADSKSVNVIKTI" FT misc_feature complement(188421..190391) FT /note="Pfam match to entry PF00771 FHIPEP, FHIPEP family, FT score 1255.90, E-value 0" FT misc_feature complement(189984..190055) FT /note="PS00994 Bacterial export FHIPEP family signature" FT CDS complement(190482..191600) FT /transl_table=11 FT /gene="invE" FT /gene_synonym="STY3020" FT /product="cell invasion protein" FT /note="Highly similar to Salmonella typhimurium invasion FT protein InvE thought to trigger cell internalisation FT SW:INVE_SALTY (P35671) (372 aa) fasta scores: E(): 0, 99.2% FT id in 372 aa. Previously sequenced as Salmonella typhi FT invasion protein InvE TR:Q56052 (EMBL:U43274) (372 aa) FT fasta scores: E(): 0, 99.5% id in 372 aa" FT /db_xref="GOA:Q56052" FT /db_xref="InterPro:IPR003520" FT /db_xref="InterPro:IPR013401" FT /db_xref="UniProtKB/Swiss-Prot:Q56052" FT /protein_id="CAD06004.1" FT /translation="MIPGSTSGISFSRILSRQASHQDATQHTDAQQAEIQQAAEDSSPG FT AEVQKFVQSTDEMSAALAQFRNRRDYEKKSSNLSNSFERVLEDEALPKAKQILKLISVH FT GGALEDFLRQARSLFPDPSDLVLVLRELLRRKDLEEIVRKKLESLLKHVEEQTDPKTLK FT AGINCALKARLFGKTLSLKPGLLRASYRQFIQSESHEVEIYSDWIASYGYQRRLVVLDF FT IEGSLLTDIDANDASCSRLEFGQLLRRLTQLKMLRSADLLFVSTLLSYSFTKAFNAEES FT SWLLLMLSLLQQPHEVDSLLADIIGLNALLLSHKEHASFLQIFYQVCKAIPSSLFYEEY FT WQEELLMALRSMTDIAYKHEMAEQRRTIEKLS" FT CDS complement(191597..193285) FT /transl_table=11 FT /gene="invG" FT /gene_synonym="STY3021" FT /product="secretory protein (associated with virulence)" FT /note="Highly similar to Salmonella typhimurium InvG FT protein precursor SW:INVG_SALTY (P35672) (562 aa) fasta FT scores: E(): 0, 99.1% id in 562 aa and to Shigella flexneri FT outer membrane protein MxiD SW:MXID_SHIFL (Q04641) (566 aa) FT fasta scores: E(): 0, 50.9% id in 489 aa. Contains a FT possible N-terminal signal sequence." FT /db_xref="GOA:Q8Z489" FT /db_xref="InterPro:IPR003522" FT /db_xref="InterPro:IPR004845" FT /db_xref="InterPro:IPR004846" FT /db_xref="InterPro:IPR005644" FT /db_xref="UniProtKB/TrEMBL:Q8Z489" FT /protein_id="CAD06005.1" FT /translation="MKTHILLARVLACAALVLVAPGYSSEKIPVTGSGFVAKDDSLRTF FT FDAMALQLKEPVIVSKMAARKKITGNFEFHDPNALLEKLSLQLGLIWYFDGQAIYIYDA FT SEMRNAVVSLRNVSLNEFNNFLKRSGLYNKNYPLRGDNRKGTFYVSGPPVYVDMVVNAA FT TMMDKQNDGIELGRQKIGVMRLNNTFVGDRTYNLRDQKMVIPGIATAIERLLQGEEQPL FT GNIVSSEPPAMPAFSANGEKGKAANYAGGMSLQEALKQNAAAGNIKIVAYPDTNSLLVK FT GTAGQVHFIEMLVKALDVAKRHVELSLWIVDLNKSDLERLGTSWSGSITIGDKLGVSLN FT QSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGERNV FT ALEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTI FT ARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKE FT IVDPLTPDASESVNNILKQSGAWSGDDKLQKWVRVYLDRGQEVIK" FT misc_feature complement(191729..193171) FT /note="Pfam match to entry PF00263 Bac_GSPproteins, FT Bacterial type II secretion system protein, score 626.30, FT E-value 1.7e-184" FT misc_feature complement(191795..191896) FT /note="PS00875 Bacterial type II secretion system protein D FT signature" FT misc_feature complement(191888..191911) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)" FT CDS complement(193282..193932) FT /transl_table=11 FT /gene="invF" FT /gene_synonym="STY3022" FT /product="possible AraC-family regulatory protein" FT /note="Similar to Salmonella typhimurium invasion protein FT InvF proposed to regulate the inv operon SW:INVF_SALTY FT (P39437) (216 aa) fasta scores: E(): 0, 100.0% id in 216 FT aa." FT /db_xref="GOA:P69342" FT /db_xref="InterPro:IPR000005" FT /db_xref="InterPro:IPR009057" FT /db_xref="InterPro:IPR018060" FT /db_xref="InterPro:IPR018062" FT /db_xref="UniProtKB/Swiss-Prot:P69342" FT /protein_id="CAD06006.1" FT /translation="MSFSESRHNENCLIQEGALLFCEQAVVAPVSGDLVFRPLKIEVLS FT KLLAFIDGAGLVDTTYAESDKWVLLSPEFRAIWQDRKRCEYWFLQQIITPSPAFNKVLA FT LLRKSESYWLVGYLLAQSTSGNTMRMLGEDYGVSYTHFRRLCSRALGGKAKSELRNWRM FT AQSLLNSVEGHENITQLAVNHGYSSPSHFSSEIKELIGVSPRKLSNIIQLADK" FT misc_feature complement(193300..193560) FT /note="Pfam match to entry PF00165 HTH_AraC, Bacterial FT regulatory helix-turn-helix proteins, araC family, score FT 82.50, E-value 8.6e-21" FT misc_feature complement(193321..193449) FT /note="PS00041 Bacterial regulatory proteins, araC family FT signature" FT CDS 194388..194831 FT /transl_table=11 FT /gene="invH" FT /gene_synonym="STY3023" FT /product="cell adherance/invasion protein" FT /note="Similar to Salmonella typhimurium invasion protein FT invH SW:INVH_SALTY (P37423) (147 aa) fasta scores: E(): 0, FT 99.3% id in 147 aa. Contains a possible N-terminal signal FT sequence." FT /db_xref="GOA:P97238" FT /db_xref="InterPro:IPR006830" FT /db_xref="UniProtKB/TrEMBL:P97238" FT /protein_id="CAD06007.1" FT /translation="MKKFYSCLPVFLLIGCAQVPLPSSVSKPVQQPGAQKEQLANANSI FT DECQSLPYVPSDLAKNKSLSNQNADNSASKNSAISSSIFCEKYKQTKEQALTFFQEHPQ FT YMRSKEDEEQLMTEFKKVLLEPGSKNLSIYQTLLAAHERLQAL" FT misc_feature 194403..194435 FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site" FT CDS 195226..195440 FT /pseudo FT /transl_table=11 FT /gene="STY3025" FT /product="insertion sequence transposase (pseudogene)" FT /note="Insertion element gene fragment which is similar to FT Salmonella enteritidis insertion sequence IS1230 TR:O34117 FT (EMBL:U91789) and to an Escherichia coli hypothetical FT protein found within IS3 TR:P77681 (EMBL:AE000298)." FT CDS 195705..195995 FT /transl_table=11 FT /gene="STY3026" FT /product="hypothetical protein" FT /note="Weakly similar to Escherichia coli hypothetical FT protein (Orf80) located on adherence factor plasmid pB171 FT TR:Q9S0Y9 (EMBL:AB024946) (95 aa) fasta scores: E(): 1e-06, FT 31.9% id in 94 aa" FT /db_xref="InterPro:IPR014795" FT /db_xref="UniProtKB/TrEMBL:Q8Z488" FT /protein_id="CAD06009.1" FT /translation="MKTMPQIAIESNERLSLRVSTDAKKLIVRAAAIQQTNLTDFVVSN FT VLPVAQKIVDAAERVYLTERDTQMIMEILDNPPAPNEKLLAAAFALPDMKK" FT CDS 195992..196519 FT /transl_table=11 FT /gene="STY3027" FT /product="hypothetical protein" FT /note="Weakly similar to Escherichia coli hypothetical FT protein (Orf79) located on adherence factor plasmid pB171 FT TR:Q9S0Z0 (EMBL:AB024946) (176 aa) fasta scores: E(): FT 4.2e-10, 31.5% id in 149 aa. Also weakly similar to FT Mycobacterium tuberculosis hypothetical 18.0 kDa protein FT Rv0919 TR:O05911 (EMBL:Z95210) (166 aa) fasta scores: E(): FT 1.9e-12, 33.1% id in 157 aa" FT /db_xref="GOA:Q8XFS7" FT /db_xref="InterPro:IPR000182" FT /db_xref="InterPro:IPR016181" FT /db_xref="UniProtKB/TrEMBL:Q8XFS7" FT /protein_id="CAD06010.1" FT /translation="MMFTDWHEAAIGKTHNRMNFDCGDADLNQFLQRHARQNHEKGTTK FT TYVALDNSDVTRIHGFYSVSPASLIYAQVPGAISKGLGRYDVPVFRLGRLAVDKSMQGQ FT GLGAQLLLSAGKRCIQAALQVGGVALLIDAKNKQVCDWYKGFGAVPLNDQPLSLLLSFK FT TLYAALSASGRL" FT misc_feature 196151..196438 FT /note="Pfam match to entry PF00583 Acetyltransf, FT Acetyltransferase (GNAT) family, score 23.70, E-value FT 0.0043" FT CDS complement(196592..197034) FT /pseudo FT /transl_table=11 FT /gene="STY3029" FT /product="transposase (pseudogene)" FT /note="Similar to Escherichia coli probable transposase for FT transposon TN903 SW:TRA2_ECOLI (P03009) (307 aa)." FT CDS 197240..197896 FT /transl_table=11 FT /gene="STY3030" FT /product="possible serine/threonine protein phosphatase" FT /note="Similar to Escherichia coli serine/threonine protein FT phosphatase 2 PphB SW:PRP2_ECOLI (P55799) (218 aa) fasta FT scores: E(): 0, 59.6% id in 218 aa" FT /note="Fasta hit to PRP1_ECOLI (218 aa), 43% identity in FT 213 aa overlap" FT /note="Orthologue of E. coli PRP2_ECOLI; Fasta hit to FT PRP2_ECOLI (218 aa), 60% identity in 218 aa overlap" FT /db_xref="GOA:Q8Z487" FT /db_xref="HSSP:1G5B" FT /db_xref="InterPro:IPR004843" FT /db_xref="InterPro:IPR006186" FT /db_xref="UniProtKB/TrEMBL:Q8Z487" FT /protein_id="CAD06012.1" FT /translation="MELIRYADINSVLYRHIWVVGDIHGCYSLLLTRLAQLNFSPDTDL FT LISTGDNIDRGKENLETLRLLNTSWFISVVGNHEAMALDAFETQDGNFWYVNGGYWYDS FT VTQKDRQEATELLLTFKQRPHIIEVKTSSKKYVIAHADYPDDSYDYGKQVDIDSVLWSR FT DRLLSSLQGNIHPIRGADTFIFGHMIVDYTTTFANQIYIDTGSFCSGNLSFFKIK" FT CDS complement(198066..198251) FT /transl_table=11 FT /gene="STY3031" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q8Z486" FT /protein_id="CAD06013.1" FT /translation="MFATKRNHNKIKRETDASELKTVIKIVLHEGKPIHFATTVIVLYS FT DRYLELCDLYSSQAIE" FT CDS complement(198260..198586) FT /transl_table=11 FT /gene="STY3032" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:Q8Z485" FT /protein_id="CAD06014.1" FT /translation="MKTTLSQPFIINKLSINVKSALSRSGKIVFEANPAQKLYIVFDDH FT RQAPAGFGVKASLTKKTYVIQRRVASSDRNVSEGRKPSSVLKVKVENVFDFPNIDETRQ FT SAGN" FT CDS 198744..201311 FT /transl_table=11 FT /gene="STY3033" FT /gene_synonym="mutS" FT /product="DNA mismatch repair protein" FT /note="Orthologue of E. coli mutS (MUTS_ECOLI); Fasta hit FT to MUTS_ECOLI (853 aa), 95% identity in 849 aa overlap" FT /db_xref="GOA:P0A1Y1" FT /db_xref="InterPro:IPR000432" FT /db_xref="InterPro:IPR005748" FT /db_xref="InterPro:IPR007695" FT /db_xref="InterPro:IPR007696" FT /db_xref="InterPro:IPR007860" FT /db_xref="InterPro:IPR007861" FT /db_xref="InterPro:IPR016151" FT /db_xref="UniProtKB/Swiss-Prot:P0A1Y1" FT /protein_id="CAD06015.1" FT /translation="MNESFDKDFSNHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDD FT AKRASQLLDISLTKRGASAGEPIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPATS FT KGPVERKVVRIVTPGTISDEALLQERQDNLLAAIWQDGKGYGYATLDISSGRFRLSEPA FT DRETMAAELQRTNPAELLYAEDFAEMALIEGRRGLRRRPLWEFEIDTARQQLNLQFGTR FT DLVGFGVENASRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATRRNLEI FT TQNLAGGVENTLAAVLDCTVTPMGSRMLKRWLHMPVRNTDILRERQQTIGALQDTVSEL FT QPVLRQVGDLERILARLALRTARPRDLARMRHAFQQLPELHAQLETVDSAPVQALRKKM FT GDFAELRDLLERAIIDAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLDRLEIRERE FT RTGLDTLKVGYNAVHGYYIQISRGQSHLAPINYVRRQTLKNAERYIIPELKEYEDKVLT FT SKGKALALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWTLNYTCPTFTD FT KPGIRITEGRHPVVEQVLNEPFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALL FT AYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATENSLVLM FT DEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE FT HGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQVDG FT TQMSLLAAPEETSPAVEALENLDPDSLTPRQALEWIYRLKSLV" FT misc_feature 198786..200168 FT /note="Pfam match to entry PF01624 MutS_N, MutS family, FT N-terminal putative DNA binding domain, score 731.10, FT E-value 4.8e-216" FT misc_feature 200394..201116 FT /note="Pfam match to entry PF00488 MutS_C, DNA mismatch FT repair proteins, mutS family, score 601.90, E-value FT 3.7e-177" FT misc_feature 200589..200612 FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)" FT misc_feature 200811..200861 FT /note="PS00486 DNA mismatch repair proteins mutS family FT signature" FT CDS complement(201367..201663) FT /transl_table=11 FT /gene="STY3034" FT /product="hypothetical protein" FT /db_xref="InterPro:IPR016918" FT /db_xref="UniProtKB/TrEMBL:Q8Z484" FT /protein_id="CAD06016.1" FT /translation="MIARFAVDFTMITPGGICLDYPALGAFFQAQRACRPGLVIMVEHI FT DLVAEWPEGAALRYRERQQLPGQAETVRWSTVILKRERGRIVWRHLHETTATA" FT CDS complement(201746..202954) FT /transl_table=11 FT /gene="STY3036" FT /product="possible membrane transport protein" FT /note="Weakly similar to a number of putative membrane FT transport and drug efflux proteins e.g. Propionibacterium FT freudenreichii membrane-bound transport protein HemX FT TR:P72184 (EMBL:U51164) (487 aa) fasta scores: E(): FT 3.6e-19, 24.2% id in 446 aa. Contains multiple possible FT membrane spanning hydrophobic domains." FT /db_xref="GOA:Q8Z483" FT /db_xref="InterPro:IPR005829" FT /db_xref="InterPro:IPR011701" FT /db_xref="InterPro:IPR016196" FT /db_xref="UniProtKB/TrEMBL:Q8Z483" FT /protein_id="CAD06017.1" FT /translation="MTYRSKVAVVYLLGFFLDLINLFIASVAFPAMSVDLHTSISALAW FT VSNGYIAGLTLIVPFSAFLSRYLGARRLIIFSLILFSVAAAAAGFADSLHSLVFWRIVQ FT GAGGGLLIPVGQALTWQQFKPHERAGVSSVVMMVALLAPACSPAIGGLLVETCGWRWIF FT FATLPVAVLTLLLAYRWLNVASTTMASARLLHLPLLTDKLLRFAMIVYLCVPGMFIGIS FT VVGMFYLQNVAQLSPAAAGSLMLPWSIASFVAIMLTGRYFNRLGPRPLIIVGCLLQAAG FT ILLLTNVTPATSHRVLMMIFALMGAGGSLCSSTAQSGAFLTIARRDMPDASALWNLNRQ FT LSFFLGATLLTLLLNALQRVMSLEVAYRWTFIAAAGITLLPLIYAVCLNNRQALLCLKK FT ERS" FT misc_feature complement(202571..202648) FT /note="PS00217 Sugar transport proteins signature 2" FT RBS complement(202962..202966) FT misc_feature 203033..203155 FT /note="PS00041 Bacterial regulatory proteins, araC family FT signature" FT CDS 203042..203974 FT /transl_table=11 FT /gene="STY3037" FT /product="possible LysR-family transcriptional regulator" FT /note="Similar to several proposed transcriptional FT regulators e.g. Pseudomonas aeruginosa PtxR TR:P72131 FT (EMBL:U35068) (312 aa) fasta scores: E(): 0, 36.7% id in FT 297 aa" FT /db_xref="GOA:Q8Z482" FT /db_xref="InterPro:IPR000847" FT /db_xref="InterPro:IPR005119" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q8Z482" FT /protein_id="CAD06018.1" FT /translation="MTVKELAMLNLQRMSLFVAVVDSGSFTAAAAASGQTKAVVSFNIR FT QLEKELGVTLLLRSTRRLTLTDAGVLFYQKGVNLLNAAKNLQDEVRASHSGLGGELRIT FT TTPEFGEQVVIPVLAQFSQRHPDLRIRHMSSSHHADLIAERFDVAIRLGSLADSRYRAA FT LISRFTILPVAAPQWLARHPVSSLESLAQAEWIIHERLPTPLRWTVTNNHGQHSRLEIS FT KAGKISVDSARSLMAFALAGSGVALLPQWLVNTALEDGTLIHVLPDYHFPRQGIYAVYP FT DARHVSTKVRAFIDFLRSQWDCGEHAPSL" FT misc_feature 203072..203491 FT /note="Pfam match to entry PF00126 HTH_1, Bacterial FT regulatory helix-turn-helix protein, lysR family, score FT 140.80, E-value 2.5e-38" FT misc_feature 203114..203206 FT /note="PS00044 Bacterial regulatory proteins, lysR family FT signature" FT CDS complement(204016..205512) FT /transl_table=11 FT /gene="STY3038" FT /product="possible permease" FT /note="Similar to Haemophilus influenzae hypothetical FT permease Hi1015 SW:YA15_HAEIN (P71364) (488 aa) fasta FT scores: E(): 0, 72.4% id in 490 aa. Contains multiple FT possible membrane spanning hydrophobic domains and a a FT possible N-terminal signal sequence." FT /note="Orthologue of E. coli YGBN_ECOLI; Fasta hit to FT YGBN_ECOLI (454 aa), 34% identity in 460 aa overlap" FT /db_xref="GOA:Q8Z481" FT /db_xref="InterPro:IPR003474" FT /db_xref="UniProtKB/TrEMBL:Q8Z481" FT /protein_id="CAD06019.1" FT /translation="MTSLPTPIIGLIVAVFVLVWLVLRTRVHALIAMLAAACIAGLLGG FT MGIDKTLSVITSGFGTTLGSIGLVIGLGVMMGRLLEVSGAAERIAWSFIKWLGKRREEW FT ALAITGYIVSIPIFVDSAFVILYPVAKALAKSGKRSLLTLGVALAGGLVVTHHTVPPTP FT GPLGVAGIFNVDIGAMLLTGMALAVPCVIGIVFYAQWLDKRYPDFVPRTLNADEVNAAL FT EQYNKEKEQKDLPSLTLSLLPIVVPIVLIFLKAICSTLATVEGWSGLATHPVVQAINFV FT GSPVIALAISVLLAVYTLVPRMDKHTTAERLEEGLQSAGIILLVTGAGGALGAILRDSG FT AGQQLAEQVANLPISPILIPFIVATLVRLIQGSGTVAMITAASISAPILAQIPGINMLL FT AAQAATMGSLFFGYFNDSLFWVVNRMMGVSDVKQQMVVWSVPTTIAWAIGGTGVALINL FT LFGSGGSWLDPLLPIVVLAAIMLWVRWQAQGIKDKLVVKD" FT CDS complement(205509..206459) FT /transl_table=11 FT /gene="STY3039" FT /product="conserved hypothetical protein" FT /note="Similar to Haemophilus influenzae hypothetical FT protein HI1014 SW:YA14_HAEIN (P44094) (315 aa) fasta FT scores: E(): 0, 54.3% id in 315 aa, and to Mus musculus FT TR:AAF61395 (EMBL:AF134346) L-threonine 3-dehydrogenase FT TR:AAF61395 (EMBL:AF134346) (368 aa) fasta scores: E(): FT 6.3e-10, 26.6% id in 297 aa" FT /db_xref="GOA:Q8Z480" FT /db_xref="InterPro:IPR001509" FT /db_xref="InterPro:IPR016040" FT /db_xref="UniProtKB/TrEMBL:Q8Z480" FT /protein_id="CAD06020.1" FT /translation="MQIIITGGGGFLGQKLASALLNSSLAFNELLLVDLKMPARLSDSP FT RLRCLEADLTQPGVLENVITANTSVVYHLAAIVSSYAEDDFDLGWKVNLDLTRQLLEAC FT RRQPQKIRFVFSSSLAVYGGTLPECVTDTTALTPRSSYGAQKAACELLVNDYTRKGYVD FT GLALRLPTICVRPGKLNRAASSFVSAIIREPLQGETTICPVSESLRLWISSPATVIHNL FT SLAATLPAPGEASSINLPGISVTVGEMLETLRQAGGQAARDRVTHQRDEGVEKIVASWP FT GRIDNQRALALGFVADKRFDDIIERFRQDDMEGRS" FT CDS complement(206499..207275) FT /transl_table=11 FT /gene="hyi" FT /gene_synonym="STY3040" FT /product="putative hydroxypyruvate isomerase" FT /EC_number="5.3.1.22" FT /note="Similar to Escherichia coli, glyoxylate inducible, FT hydroxypyruvate isomerase hyi SW:HYI_ECOLI (P30147) (258 FT aa) fasta scores: E(): 0, 41.1% id in 258 aa, and to FT Escherichia coli hypothetical 29.2 kDa protein in pphB-rpoS FT intergenic region SW:YGBM_ECOLI (Q46891) (258 aa) fasta FT scores: E(): 0, 79.8% id in 258 aa" FT /db_xref="GOA:Q8Z479" FT /db_xref="HSSP:1K77" FT /db_xref="InterPro:IPR012307" FT /db_xref="InterPro:IPR013022" FT /db_xref="UniProtKB/TrEMBL:Q8Z479" FT /protein_id="CAD06021.1" FT /translation="MPRFAADLSMMFTEVPFIERFAAAAEAGFQAVEFLFPYGFAASEI FT KAQLSRHDLTLALFNTSAGDTAAGEWGRAALPGREHDARADIDLALEYALALECEQVHI FT MAGVVPDGADGARYRATFIDNLRYAAGRFAAHDKRILIEALSPGVKPGYLFSSQYQALG FT IAEEVDRPNVFIQLDTFHAQKVDGNLSHLIREYAGRYAHVQIASLPDRHEPDDGEINYP FT WLFRLFDDVGYCGWIGCEYQPRNTTQEGLGWFNAWR" FT CDS complement(207280..207918) FT /transl_table=11 FT /gene="STY3041" FT /product="possible sugar aldolase" FT /note="Weakly similar to a number of aldolases e.g. FT Escherichia coli L-fuculose phosphate aldolase FucA FT SW:FUCA_ECOLI (P11550) (215 aa) fasta scores: E(): 6.3e-13, FT 32.0% id in 206 aa" FT /note="Fasta hit to FUCA_ECOLI (215 aa), 32% identity in FT 206 aa overlap" FT /note="Orthologue of E. coli YGBL_ECOLI; Fasta hit to FT YGBL_ECOLI (212 aa), 86% identity in 211 aa overlap" FT /db_xref="GOA:Q8XER3" FT /db_xref="HSSP:1DZW" FT /db_xref="InterPro:IPR001303" FT /db_xref="UniProtKB/TrEMBL:Q8XER3" FT /protein_id="CAD06022.1" FT /translation="MTILAKEEHALREEMVRIAASFFQRGYATGSAGNLSLLLPDGNIL FT ATPTGSCLGNLDPQRLSKVDPQGEWLSGDKPSKEVRFHLALYRNNPCCKAVVHLHSTWS FT TALSCLEGLDPQNVIRPFTPYVVMRMGDIPLVPYYRPGDDRIARDLAALAARHQAFLLA FT NHGPVVCGENLQEAANNTEELEETAKLIFILGERPIRYLTTEEIAQLRR" FT misc_feature complement(207286..207882) FT /note="Pfam match to entry PF00596 Aldolase_II, Class II FT Aldolase and Adducin N-terminal domain., score 67.20, FT E-value 3.5e-16" FT misc_feature complement(207592..207624) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site" FT CDS complement(208026..208700) FT /pseudo FT /partial FT /transl_table=11 FT /gene="STY3042" FT /product="conserved hypothetical protein (pseudogene)" FT /note="Similar to C-terminus of Escherichia coli FT hypothetical 41.3 kDa protein in pphB-rpoS intergenic FT region YgbK SW:YGBK_ECOLI (Q46889) (388 aa) fasta scores: FT E(): 0, 74.7% id in 225 aa" FT /db_xref="PSEUDO:CAD06023.1" FT CDS complement(208690..209210) FT /pseudo FT /transl_table=11 FT /gene="ygbJ" FT /gene_synonym="STY3043" FT /product="putative oxidoreductase (pseudogene)" FT /note="Similar to the N-terminus of Escherichia coli FT hypothetical 30.8 kDa protein in pphb-rpos intergenic FT region ygbJ SW:YGBJ_ECOLI (Q46888) (302 aa) fasta scores: FT E(): 0, 69.7% id in 175 aa, and to Haemophilus influenzae FT hypothetical protein Hi1010 hi1010 SW:YGBJ_HAEIN (P44979) FT (301 aa) fasta scores: E(): 2.9e-30, 58.2% id in 170 aa, FT and to Escherichia coli 2-hydroxy-3-oxopropionate reductase FT garr or b3125 SW:GARR_ECOLI (P23523) (294 aa) fasta scores: FT E(): 1.6e-15, 38.0% id in 166 aa" FT CDS 209407..210171 FT /transl_table=11 FT /gene="STY3044" FT /product="DeoR-family trancriptional regulator" FT /note="Similar to Escherichia coli hypothetical FT transcriptional regulator in pphb-rpos intergenic region FT ygbI SW:YGBI_ECOLI (P52598) (265 aa) fasta scores: E(): 0, FT 86.2% id in 253 aa" FT /db_xref="GOA:Q8Z478" FT /db_xref="InterPro:IPR001034" FT /db_xref="InterPro:IPR014036" FT /db_xref="InterPro:IPR018356" FT /db_xref="UniProtKB/TrEMBL:Q8Z478" FT /protein_id="CAD06025.1" FT /translation="MIPTERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQ FT QGAVIQVSGGVQSSTRVAHEPSHQIKTELATPQKAAIGKLAASLVQPESCIYLDAGTTT FT LAIARQLVTMNKLTVVTNDFVIADYLMDNSGCTIIHTGGAVCRENRSCVGEAAATLLRG FT LMIDQAFISASSWSVRGISTPAEDKVTVKRAVASASRQKILVCDATKYGQVATWLALSL FT AEFNQIVTDDGLPESAIRALAKVDISLLMAKQ" FT misc_feature 209422..209526 FT /note="PS00894 Bacterial regulatory proteins, deoR family FT signature" FT misc_feature 209422..210099 FT /note="Pfam match to entry PF00455 deoR, Bacterial FT regulatory proteins, deoR family, score 212.90, E-value FT 4.8e-60" FT CDS complement(210190..210594) FT /transl_table=11 FT /gene="STY3045" FT /gene_synonym="slyA" FT /product="putative regulatory protein" FT /note="Similar to several MarR-family proteins including: FT Escherichia coli SlyA-like transcriptional regulatory FT protein TR:Q9X729 (EMBL:AJ006210) (135 aa) fasta scores: FT E(): 0, 80.5% id in 133 aa, and to Serratia sp. ATCC39006 FT Rap regulator of antibiotic and pigment production FT TR:Q9RA96 (EMBL:AF168597) (145 aa) fasta scores: E(): FT 0.0053, 25.6% id in 125 aa. Also weakly similar to STY1678 FT 28.0% identity in 125 aa overlap." FT /db_xref="GOA:Q8Z477" FT /db_xref="HSSP:1LNW" FT /db_xref="InterPro:IPR000835" FT /db_xref="InterPro:IPR011991" FT /db_xref="UniProtKB/TrEMBL:Q8Z477" FT /protein_id="CAD06026.1" FT /translation="MELRNTAFHLLRQLFQQHTARWQHELPELTKPQYAVMRVIAEHPG FT IEQVDLTEAAVSTKATLAEMLSRMENRGLVKRENDPLDKRRRFVYLTVQGQTLLAAAIP FT LGDRVDDEFLGRLSAEEREQFTQLVRKMMT" FT misc_feature complement(210199..210510) FT /note="Pfam match to entry PF01047 MarR, MarR family, score FT 90.60, E-value 3.1e-23" FT CDS 210765..211358 FT /transl_table=11 FT /gene="STY3046" FT /product="possible decarboxylase" FT /note="Similar to Escherichia coli phenylacrylic acid FT decarboxylase-like protein PaD1 TR:Q9X728 (EMBL:AJ006210) FT (197 aa) fasta scores: E(): 0, 87.8% id in 196 aa. Also FT similar to Streptomyces sp. D7, vdcB, phenylacrylic acid FT decarboxylase, part of the vanillic acid decarboxylation FT gene cluster TR:Q9X696 (EMBL:AF134589) (200 aa) fasta FT scores: E(): 0, 73.5% id in 189 aa" FT /note="Paralogue of E. coli ubiX (UBIX_ECOLI); Fasta hit to FT UBIX_ECOLI (189 aa), 56% identity in 186 aa overlap" FT /db_xref="GOA:Q8Z476" FT /db_xref="InterPro:IPR003382" FT /db_xref="InterPro:IPR004507" FT /db_xref="UniProtKB/TrEMBL:Q8Z476" FT /protein_id="CAD06027.1" FT /translation="MRLIVGMTGATGAPLGVELLQALRAIPDVETHLVMSKWAKTTIEL FT ETPYTPAEVAALADYCHSPADQAATISSGSFRTDGMIIIPCSMKTLAGVRAGYADGLVG FT RAADVVLKEGRKLVLVPREMPLSTIHLENMLALSRMGVAIVPPMPAFYNLPQTVDDIIQ FT HIVARVLDQFGLEHTRARRWQGLRQAANFSQENG" FT CDS 211358..212785 FT /transl_table=11 FT /gene="STY3047" FT /product="conserved hypothetical protein" FT /note="Similar to several proteins of undefined function FT e.g. Escherichia coli YclC protein yclC TR:Q9X727 FT (EMBL:AJ006210) (475 aa) fasta scores: E(): 0, 97.7% id in FT 475 aa and Streptomyces sp hypothetical protein VdcC which FT is synthesized in response to vanillate and is encoded by a FT gene within the vanillic acid decarboxylation cluster FT SW:VDCC_STRD7 (Q9X697) (474 aa) fasta scores: E(): 0, 72.2% FT id in 474 aa" FT /db_xref="InterPro:IPR002830" FT /db_xref="UniProtKB/TrEMBL:Q8Z475" FT /protein_id="CAD06028.1" FT /translation="MAFDDLRSFLHALDQQGQLLKISEEVNAEPDLAAAANATGRIGDG FT APALWFDNIRGFTDARVAMNTIGSWQNHAISLGLPPNTPVKKQIDEFIRRWDNFPVAPE FT RRANPGWAENTVDGDAINLFDILPLFRLNDGDGGFYLDKACVVSRDPLDPDNFGKQNVG FT IYRMEVKGKRKLGLQPVPMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYD FT QSEYEMAGALRESPYPIATAPLTGFDVPWGSEVILEGVIESRKREIEGPFGEFTGHYSG FT GRNMTVVRIDKVSYHSKPIFESLYLGMPWTEIDYLMGPATCVPLYQQLKAEFPEVQAVN FT AMYTHGLLAIISTKKRYGGFARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFNLPQVMWA FT LSSKVNPAGDLVQLPNMSVLELDPGSSPAGITDKLIIDATTPVAPDNRGHYSQPVVDLP FT ETKAWAEKLTAMLANRK" FT misc_feature 211385..212617 FT /note="Pfam match to entry PF01977 UPF0096, Protein of FT unknown function UPF0096, score 524.40, E-value 8.3e-154" FT CDS 212796..213032 FT /transl_table=11 FT /gene="STY3048" FT /product="conserved hypothetical protein" FT /note="Similar to Streptomyces sp. D7 hypothetical protein FT VdcD which is encoded by a gene within the vanillic acid FT decarboxylation cluster TR:Q9X698 (EMBL:AF134589) (79 aa) FT fasta scores: E(): 3.4e-17, 60.6% id in 71 aa" FT /db_xref="UniProtKB/TrEMBL:Q8XEM2" FT /protein_id="CAD06029.1" FT /translation="MICPRCADAHIELMATSPVKGVWTVYQCQHCLYTWRDTEPLRRTS FT REHYPQAFRMTQKDIDDAPMVPSIPPLLAEDKR" FT CDS complement(213077..214069) FT /transl_table=11 FT /gene="rpoS" FT /gene_synonym="STY3049" FT /product="RNA polymerase sigma subunit RpoS (sigma-38)" FT /note="Orthologue of E. coli rpoS (RPOS_ECOLI); Fasta hit FT to RPOS_ECOLI (330 aa), 99% identity in 330 aa overlap" FT /db_xref="GOA:P0A2E6" FT /db_xref="InterPro:IPR000943" FT /db_xref="InterPro:IPR007624" FT /db_xref="InterPro:IPR007627" FT /db_xref="InterPro:IPR007630" FT /db_xref="InterPro:IPR009042" FT /db_xref="InterPro:IPR011991" FT /db_xref="InterPro:IPR012761" FT /db_xref="InterPro:IPR013324" FT /db_xref="InterPro:IPR013325" FT /db_xref="InterPro:IPR014284" FT /db_xref="UniProtKB/Swiss-Prot:P0A2E6" FT /protein_id="CAD06030.1" FT /translation="MSQNTLKVHDLNEDAEFDENGVEAFDEKALSEEEPSDNDLAEEEL FT LSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVK FT IARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTR FT TIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSV FT DTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLL FT GYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFRE" FT misc_feature complement(213125..213808) FT /note="Pfam match to entry PF00140 sigma70, Sigma-70 FT factor, score 385.90, E-value 4.1e-112" FT misc_feature complement(213131..213211) FT /note="PS00716 Sigma-70 factors family signature 2" FT misc_feature complement(213677..213718) FT /note="PS00715 Sigma-70 factors family signature 1" FT CDS complement(214132..215253) FT /transl_table=11 FT /gene="STY3050" FT /gene_synonym="nlpD" FT /product="lipoprotein NlpD precursor" FT /note="Orthologue of E. coli nlpD (NLPD_ECOLI); Fasta hit FT to NLPD_ECOLI (379 aa), 86% identity in 380 aa overlap" FT /db_xref="GOA:Q56131" FT /db_xref="InterPro:IPR002482" FT /db_xref="InterPro:IPR002886" FT /db_xref="InterPro:IPR011055" FT /db_xref="InterPro:IPR016047" FT /db_xref="InterPro:IPR018392" FT /db_xref="UniProtKB/Swiss-Prot:Q56131" FT /protein_id="CAD06031.1" FT /translation="MSAGSPKFTVSRIAALSLVSLWLAGCTSSSNPPAPVTSVDSGSSS FT NTNSGMLITPPPKMGATPQQAPQIQPVQRPVTQPMQTQPVTEQPVQMENGRIVYNRQYG FT NIPKGSYTGGSTYTVKKGDTLFYIAWITGNDFRDLAQRNSISAPYSLNVGQTLQVGNAS FT GTPITGGNAITQADAAQQGVVTRSAQNSTVAVASQPTITYSEGSGEQSANKMLPNNKPA FT GTVVTAPVTAPTVSTTEPNASSTSTSAPISAWRWPTDGKVIENFGASEGGNKGIDIAGS FT KGQAIVATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKI FT ATMGSTGTSSTRLHFEIRYKGKSVNPLRYLPQR" FT misc_feature complement(214147..214395) FT /note="Pfam match to entry PF01551 Peptidase_M37, Peptidase FT family M23/M37, score 155.30, E-value 1.1e-42" FT misc_feature complement(214774..214905) FT /note="Pfam match to entry PF01476 PG_binding_2, Putative FT peptidoglycan binding domain, score 53.50, E-value 4.5e-12" FT misc_feature complement(215176..215208) FT /note="PS00013 Prokaryotic membrane lipoprotein lipid FT attachment site" FT CDS complement(215429..216055) FT /transl_table=11 FT /gene="STY3051" FT /gene_synonym="pcm" FT /product="L-isoaspartyl protein carboxyl methyltransferase FT type II" FT /note="Orthologue of E. coli pcm (PIMT_ECOLI); Fasta hit to FT PIMT_ECOLI (207 aa), 94% identity in 207 aa overlap" FT /db_xref="GOA:Q8Z474" FT /db_xref="InterPro:IPR000682" FT /db_xref="UniProtKB/Swiss-Prot:Q8Z474" FT /protein_id="CAD06032.1" FT /translation="MVSGRVQALLEQLRAQGIRDELVLNALAAVPREKFIDEAFEHKAW FT ENIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVHHVCSVE FT RIKGLQWQARRRLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMAQLD FT EGGILVLPVGDEQQFLKRVRRRGGEFIIDTVEAVRFVPLVKGELA" FT misc_feature complement(215435..216046) FT /note="Pfam match to entry PF01135 PCMT, FT Protein-L-isoaspartate(D-aspartate) O-methyltransferase FT (PCMT), score 419.30, E-value 3.7e-122" FT misc_feature complement(215621..215668) FT /note="PS01279 Protein-L-isoaspartate(D-aspartate) FT O-methyltransferase signature" FT CDS complement(216049..216810) FT /transl_table=11 FT /gene="STY3052" FT /gene_synonym="surE" FT /product="stationary-phase survival protein" FT /note="Orthologue of E. coli surE (SURE_ECOLI); Fasta hit FT to SURE_ECOLI (253 aa), 92% identity in 253 aa overlap" FT /db_xref="GOA:P66882" FT /db_xref="InterPro:IPR002828" FT /db_xref="UniProtKB/Swiss-Prot:P66882" FT /protein_id="CAD06033.1" FT /translation="MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSL FT TLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYS FT GTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDL FT PLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYV FT SVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW" FT misc_feature complement(216256..216810) FT /note="Pfam match to entry PF01975 SurE, Survival protein FT SurE, score 356.50, E-value 2.8e-103" FT CDS complement(216791..217840) FT /transl_table=11 FT /gene="STY3053" FT /product="conserved hypothetical protein" FT /note="Orthologue of E. coli YGBO_ECOLI; Fasta hit to FT YGBO_ECOLI (349 aa), 89% identity in 349 aa overlap" FT /db_xref="GOA:Q8Z473" FT /db_xref="InterPro:IPR001656" FT /db_xref="InterPro:IPR011760" FT /db_xref="InterPro:IPR020103" FT /db_xref="InterPro:IPR020119" FT /db_xref="UniProtKB/Swiss-Prot:Q8Z473" FT /protein_id="CAD06034.1" FT /translation="MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHIL FT LRILKNGCNTRFVADVLAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAF FT QLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQ FT RFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDG FT DALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQ FT ETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINT FT MGDYAHIAE" FT misc_feature complement(216812..217840) FT /note="Pfam match to entry PF01142 UPF0024, Uncharacterized FT protein family UPF0024, score 502.70, E-value 2.7e-147" FT misc_feature complement(217571..217612) FT /note="PS01268 Uncharacterized protein family UPF0024 FT signature" FT CDS complement(217837..218316) FT /transl_table=11 FT /gene="ygbB" FT /gene_synonym="STY3054" FT /product="2C-methyl-D-erythritol 2,4-cyclodiphosphate FT synthase" FT /note="highly similar to Escherichia coli FT 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase FT involved in the biosynthesis of terpenoids YgpB TR:AAF44656 FT (EMBL:AF230738) (159 aa) fasta scores: E(): 0, 98.7% id in FT 159 aa." FT /note="Orthologue of E. coli ygbB (YGBB_ECOLI); Fasta hit FT to YGBB_ECOLI (159 aa), 99% identity in 159 aa overlap" FT /db_xref="GOA:Q8Z472" FT /db_xref="InterPro:IPR003526" FT /db_xref="InterPro:IPR020555" FT /db_xref="UniProtKB/Swiss-Prot:Q8Z472" FT /protein_id="CAD06035.1" FT /translation="MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALT FT DALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPK FT MLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK" FT CDS complement(218316..219026) FT /transl_table=11 FT /gene="ygbP" FT /gene_synonym="STY3055" FT /product="2-C-methyl-D-erythritol 4-phosphate FT cytidylyltransferase" FT /note="Similar to Escherichia coli 2-C-methyl-D-erythritol FT 4-phosphate cytidylyltransferase involved in the FT biosynthesis of terpenoids TR:BAA90761 (EMBL:AB037143) (236 FT aa) fasta scores: E(): 0, 91.9% id in 234 aa" FT /note="Orthologue of E. coli YGBP_ECOLI; Fasta hit to FT YGBP_ECOLI (236 aa), 92% identity in 234 aa overlap" FT /db_xref="GOA:Q8Z471" FT /db_xref="InterPro:IPR001228" FT /db_xref="InterPro:IPR018294" FT /db_xref="UniProtKB/Swiss-Prot:Q8Z471" FT /protein_id="CAD06036.1" FT /translation="MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHAL FT LAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLV FT HDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHA FT LTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLAL FT AEFYLTRTIHQEKA" FT misc_feature complement(218340..219005) FT /note="Pfam match to entry PF01128 UPF0007, Uncharacterized FT protein family UPF0007, score 483.10, E-value 2.2e-141" FT misc_feature complement(218700..218723) FT /note="PS01295 Uncharacterized protein family UPF0007 FT signature" FT CDS complement(219045..219356) FT /transl_table=11 FT /gene="STY3056" FT /product="conserved hypothetical protein" FT /note="Orthologue of E. coli YGBQ_ECOLI; Fasta hit to FT YGBQ_ECOLI (103 aa), 91% identity in 103 aa overlap" FT /db_xref="GOA:P64163" FT /db_xref="InterPro:IPR007060" FT /db_xref="UniProtKB/Swiss-Prot:P64163" FT /protein_id="CAD06037.1" FT /translation="MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAK FT LKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR" FT CDS complement(219547..219903) FT /transl_table=11 FT /gene="STY3057" FT /gene_synonym="ygbE" FT /product="conserved hypothetical protein" FT /note="Orthologue of E. coli ygbE (YGBE_ECOLI); Fasta hit FT to YGBE_ECOLI (107 aa), 66% identity in 107 aa overlap" FT /db_xref="UniProtKB/TrEMBL:Q8XGY9" FT /protein_id="CAD06038.1" FT /translation="MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVS FT WLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLA FT VGALFGALFIWLLG" FT CDS complement(219921..220526) FT /transl_table=11 FT /gene="cysC" FT /gene_synonym="STY3058" FT /product="adenosine 5-phosphosulfate kinase" FT /note="Orthologue of E. coli cysC (CYSC_ECOLI); Fasta hit FT to CYSC_ECOLI (200 aa), 86% identity in 200 aa overlap" FT /db_xref="GOA:P63890" FT /db_xref="InterPro:IPR002891" FT /db_xref="UniProtKB/Swiss-Prot:P63890" FT /protein_id="CAD06039.1" FT /translation="MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVA FT GALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVL FT TAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGID FT AIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS" FT misc_feature complement(219981..220448) FT /note="Pfam match to entry PF01583 APS_kinase, FT Adenylylsulfate kinase, score 377.10, E-value 1.8e-109" FT misc_feature complement(220401..220424) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)" FT CDS complement(220513..221952) FT /transl_table=11 FT /gene="cysN" FT /gene_synonym="STY3059" FT /product="ATP sulfurylase (ATP:sulfate adenyltransferase) FT subunit" FT /note="Orthologue of E. coli cysN (CYSN_ECOLI); Fasta hit FT to CYSN_ECOLI (475 aa), 87% identity in 475 aa overlap" FT /db_xref="GOA:Q8Z470" FT /db_xref="InterPro:IPR000795" FT /db_xref="InterPro:IPR004161" FT /db_xref="InterPro:IPR005225" FT /db_xref="InterPro:IPR009000" FT /db_xref="InterPro:IPR009001" FT /db_xref="InterPro:IPR011779" FT /db_xref="UniProtKB/Swiss-Prot:Q8Z470" FT /protein_id="CAD06040.1" FT /translation="MNTILAQQIASEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIG FT RLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST FT EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHL FT VVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRW FT YSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNPDFRGYAGTLASGSVKVGERIKVL FT PSGVESSVARIVTFDGDKEEVCAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAID FT VVWMAEQPLAPGQSYDVKLAGKKTRARIEAICYQIDINNLTQRDVESLPLNGIGLVEMT FT FDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNAL FT VRRHFPHWDARDLLGDKHGAA" FT misc_feature complement(220894..221880) FT /note="Pfam match to entry PF00009 GTP_EFTU, Elongation FT factor Tu family, score 267.80, E-value 1.1e-78" FT misc_feature complement(221659..221706) FT /note="PS00301 GTP-binding elongation factors signature" FT misc_feature complement(221830..221853) FT /note="PS00017 ATP/GTP-binding site motif A (P-loop)" FT CDS complement(221962..222870) FT /transl_table=11 FT /gene="cysD" FT /gene_synonym="STY3060" FT /product="ATP sulfurylase (ATP:sulfate adenyltransferase)" FT /note="Orthologue of E. coli cysD (CYSD_ECOLI); Fasta hit FT to CYSD_ECOLI (302 aa), 97% identity in 302 aa overlap" FT /db_xref="GOA:P65673" FT /db_xref="InterPro:IPR002500" FT /db_xref="InterPro:IPR011784" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/Swiss-Prot:P65673" FT /protein_id="CAD06041.1" FT /translation="MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLH FT LARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFV FT HGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQ FT RPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGM FT LMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQ FT GRMIDRDQAGSMELKKRQGYF" FT misc_feature complement(222130..222780) FT /note="Pfam match to entry PF01507 PAPS_reduct, FT Phosphoadenosine phosphosulfate reductase family, score FT 335.60, E-value 5.4e-97" FT CDS 223121..224167 FT /transl_table=11 FT /gene="iap" FT /gene_synonym="STY3061" FT /product="alkaline phosphatase isozyme conversion protein" FT /note="Orthologue of E. coli iap (IAP_ECOLI); Fasta hit to FT IAP_ECOLI (345 aa), 85% identity in 344 aa overlap" FT /db_xref="GOA:Q8Z469" FT /db_xref="InterPro:IPR007484" FT /db_xref="UniProtKB/TrEMBL:Q8Z469" FT /protein_id="CAD06042.1" FT /translation="MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFP FT GRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAH FT EGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPT FT HYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLNNLIVGDKLYFNSGKNTPE FT AVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNW FT NLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKE FT LAKAEKTS" FT CDS complement(224652..224945) FT /transl_table=11 FT /gene="STY3064" FT /gene_synonym="ygbF" FT /product="conserved hypothetical protein" FT /note="Orthologue of E. coli ygbF (YGBF_ECOLI); Fasta hit FT to YGBF_ECOLI (94 aa), 89% identity in 94 aa overlap" FT /db_xref="InterPro:IPR010152" FT /db_xref="UniProtKB/TrEMBL:Q8Z468" FT /protein_id="CAD06043.1" FT /translation="MSMLVVVTENVPPRLRGRLAVWLLEIRAGVYVGDVSAKIREMIWQ FT QVSVLADEGNVVMAWATNTESGFEFQTFGVNRRIPVDLDGLRLVSFLPVENQ" FT CDS complement(224948..225865) FT /transl_table=11 FT /gene="STY3065" FT /product="conserved hypothetical protein" FT /note="Orthologue of E. coli Q46896; Fasta hit to Q46896 FT (305 aa), 93% identity in 305 aa overlap" FT /db_xref="InterPro:IPR002729" FT /db_xref="InterPro:IPR019851" FT /db_xref="UniProtKB/TrEMBL:Q8Z467" FT /protein_id="CAD06044.1" FT /translation="MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIP FT VGSVACIMLEPGTRVSHAAVRLAATVGTLLVWGGEAGVRVYASGQPGGARSDKLLYQAK FT LALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVRATYALLAKQYGVKWQGR FT RYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADI FT IKFEIVVPKAFEIARRNPAEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAAGEIQPPL FT PPEDSHPIAIPLPVALGDSGHRST" FT CDS complement(225865..226569) FT /transl_table=11 FT /gene="STY3066" FT /product="conserved hypothetical protein" FT /note="Weakly similar to Escherichia coli hypothetical 22.3 FT kDa protein YgcH SW:YGCH_ECOLI (Q46897) (199 aa) fasta FT scores: E(): 5.5e-05, 27.5% id in 236 aa" FT /db_xref="InterPro:IPR010179" FT /db_xref="UniProtKB/TrEMBL:Q8Z466" FT /protein_id="CAD06045.1" FT /translation="MYLSRIQLRFNNLRPEMLAKWNSARPYASHQWLWQLFPEQELRQF FT LFREEAHGGFFMLSAIPPLLQHSLFLIETKLFNPQLTNGLELDFQLRANPVITRNGKRS FT DVMMNAKHQAKANGVEKERWWELQQQAAQAWLEQQGQQHGFRLIAPEPDDFAMWAGDEY FT SELQAHCGCVQAYQQHRFVRKDQETPITFSSVDFSGALCITDAALFKQALFSGLGKSKA FT LGCGMLMVKRKR" FT CDS complement(226569..227294) FT /transl_table=11 FT /gene="STY3067" FT /product="hypothetical protein" FT /note="Similar to the N-terminus of Escherichia coli FT orf_f226 TR:Q46898 (EMBL:U29579) (226 aa) fasta scores: FT E(): 2.6e-16, 41.4% id in 169 aa" FT /db_xref="InterPro:IPR010147" FT /db_xref="InterPro:IPR013422" FT /db_xref="UniProtKB/TrEMBL:Q8Z465" FT /protein_id="CAD06046.1" FT /translation="MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALG FT IRRDEEARLNNFNRHYHLAVHALASQDRWLRDYHTVSAPRENKKYRYYTRRDELTLASD FT EVGTLISQREYRCDGYWHVAISATPDAPYSLSELREALLTPHFPLYLGRKSCPLALPLA FT ARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSR FT QRWQFGGYTRFNGPLQERT" FT CDS complement(227304..228368) FT /transl_table=11 FT /gene="STY3068" FT /product="hypothetical protein" FT /note="Weakly similar to Escherichia coli hypothetical 40.0 FT kDa protein YgcJ SW:YGCJ_ECOLI (Q46899) (363 aa) fasta FT scores: E(): 6e-18, 29.1% id in 364 aa" FT /db_xref="InterPro:IPR010148" FT /db_xref="UniProtKB/TrEMBL:Q8Z464" FT /protein_id="CAD06047.1" FT /translation="MIMTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQS FT LKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKL FT KSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDM FT ALFDRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQG FT FASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATY FT ALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQE FT GTGSLAELLAFVSQ" FT CDS complement(228385..228987) FT /transl_table=11 FT /gene="STY3069" FT /product="hypothetical protein" FT /note="no database hits" FT /db_xref="InterPro:IPR013382" FT /db_xref="UniProtKB/TrEMBL:Q8Z463" FT /protein_id="CAD06048.1" FT /translation="MLNSNTAVLCRILHPDAQKALLDWFATLSERYERKDGKRVNGRAW FT RAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKENISF FT AAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFL FT WMEEWQRRENHQPEFRNPFERSRIRWANEYLSTSRGK" FT CDS complement(229004..230539) FT /transl_table=11 FT /gene="STY3070" FT /product="hypothetical protein" FT /note="Weakly similar to Escherichia coli orf_f502 FT TR:Q46901 (EMBL:U29579) (502 aa) fasta scores: E(): FT 1.6e-13, 23.1% id in 516 aa" FT /db_xref="InterPro:IPR013381" FT /db_xref="UniProtKB/TrEMBL:Q8Z462" FT /protein_id="CAD06049.1" FT /translation="MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAA FT WQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDP FT LDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAG FT YRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSE FT KAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQY FT DSWLHPFSPYRQALKDPSAPWLAFKGQPGGLSYKDWLGLMLNREDKFNKMQPAKVVRAA FT GQRNKMSLWCFAWDMNKAKVRCWYQHRIPLISVSHEEQFLAALNIVLVLASESLSLLRN FT ALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEA FT ELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE" FT CDS 230897..233104 FT /transl_table=11 FT /gene="STY3071" FT /product="conserved hypothetical protein" FT /note="Orthologue of E. coli ygcB (YGCB_ECOLI); Fasta hit FT to YGCB_ECOLI (888 aa), 35% identity in 738 aa overlap" FT /db_xref="GOA:Q8Z461" FT /db_xref="InterPro:IPR003607" FT /db_xref="InterPro:IPR006474" FT /db_xref="InterPro:IPR014001" FT /db_xref="UniProtKB/TrEMBL:Q8Z461" FT /protein_id="CAD06050.1" FT /translation="MTQIEYLDYLCYWGKTDKSTENITCNYHLLAYHCLDVAACGEYII FT KNNTFNSCNILKECNISGTNAENWIIWFLASHDIGKFARGFQKYAEFPDSPLVSPISGV FT SAFERHDSLGFYLWGKLFEAWSSGSNEIIAGIEPENRARFESALNSWMLISTGHHGIPP FT DTMKNRSSLAFTDEDIVAATHYLEALSELFPFTLPQEWKTKAGRKCLKQHSWFFAGLVT FT LADWMGSDESQFPLLSSAMPLKDYWPLACEKAQQAILRMPPLSQHSHYQDHRALFPFIQ FT TLTPLQQRASELDISAPGAQLVVLEDVTGAGKTEAALILTHRLMSANKGHGLYVGLPTM FT ATANAMYQRLASAYHALFTDESRPSLILAHGGREMSDSFRQSIWQPTENIAEDYARDDG FT NATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHA FT YDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAEFMSAGGSDNAGY FT PWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVD FT DALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIA FT TQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQRKSTLPDERQPPVLHIS FT GPSLAGAGRRGLVGARAKRYRLCLHRSCLPVAYPGAAASTW" FT CDS 233978..234931 FT /transl_table=11 FT /gene="sopD" FT /gene_synonym="STY3073" FT /product="possible secreted protein" FT /note="Similar to several SopD orthologues associated with FT salmonella virulence: Salmonella dublin secreted protein FT sopD TR:O52235 (EMBL:AF030589) (317 aa) fasta scores: E(): FT 0, 100.0% id in 317 aa" FT /db_xref="UniProtKB/TrEMBL:O52235" FT /protein_id="CAD06051.1" FT /translation="MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFR FT AEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMD FT ASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPE FT LLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGN FT FEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDY FT HAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT" FT CDS complement(235019..235753) FT /transl_table=11 FT /gene="STY3074" FT /gene_synonym="cysH" FT /product="3'-phosphoadenosine 5'-phosphosulfate FT sulfotransferase" FT /note="Orthologue of E. coli cysH (CYSH_ECOLI); Fasta hit FT to CYSH_ECOLI (243 aa), 94% identity in 243 aa overlap" FT /db_xref="GOA:Q8Z460" FT /db_xref="InterPro:IPR002500" FT /db_xref="InterPro:IPR004511" FT /db_xref="InterPro:IPR011800" FT /db_xref="InterPro:IPR014729" FT /db_xref="UniProtKB/Swiss-Prot:Q8Z460" FT /protein_id="CAD06052.1" FT /translation="MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLP FT GEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVY FT RAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGS FT RAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWAQGYLSVGDTHTTRKWE FT PGMAEEETRFFGLKRECGLHEG" FT misc_feature complement(235028..235609) FT /note="Pfam match to entry PF01507 PAPS_reduct, FT Phosphoadenosine phosphosulfate reductase family, score FT 298.30, E-value 9.4e-86" FT CDS complement(235829..237541) FT /transl_table=11 FT /gene="STY3075" FT /gene_synonym="cysI" FT /product="sulfite reductase (NADPH) hemoprotein alpha FT subunit" FT /note="Orthologue of E. coli cysI (CYSI_ECOLI); Fasta hit FT to CYSI_ECOLI (569 aa), 93% identity in 569 aa overlap" FT /db_xref="GOA:Q8Z459" FT /db_xref="InterPro:IPR005117" FT /db_xref="InterPro:IPR006066" FT /db_xref="InterPro:IPR006067" FT /db_xref="InterPro:IPR011786" FT /db_xref="UniProtKB/Swiss-Prot:Q8Z459" FT /protein_id="CAD06053.1" FT /translation="MSEKYPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFK FT GDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAA FT DNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYE FT SELHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVI FT PPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEH FT TLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGITFEPIRPYEFT FT GRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLI FT IASVPESQKAKIEKLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKV FT EAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRM FT YQENITEPDIQASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE" FT misc_feature complement(236048..236257) FT /note="Pfam match to entry PF01077 NIR_SIR, Nitrite and FT sulphite reductase 4Fe-4S domain, score 123.10, E-value FT 5.3e-33" FT misc_feature complement(236063..236113) FT /note="PS00365 Nitrite and sulfite reductases FT iron-sulfur/siroheme-binding site" FT CDS complement(237541..239340) FT /transl_table=11 FT /gene="STY3076" FT /gene_synonym="cysJ" FT /product="sulfite reductase (NADPH) flavoprotein beta FT subunit" FT /note="Orthologue of E. coli cysJ (CYSJ_ECOLI); Fasta hit FT to CYSJ_ECOLI (598 aa), 91% identity in 598 aa overlap" FT /db_xref="GOA:Q8Z458" FT /db_xref="InterPro:IPR001094" FT /db_xref="InterPro:IPR001433" FT /db_xref="InterPro:IPR001709" FT /db_xref="InterPro:IPR003097" FT /db_xref="InterPro:IPR008254" FT /db_xref="InterPro:IPR010199" FT /db_xref="InterPro:IPR017927" FT /db_xref="InterPro:IPR017938" FT /db_xref="UniProtKB/Swiss-Prot:Q8Z458" FT /protein_id="CAD06054.1" FT /translation="MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGFFWGVLN FT PRSGAVAVTPAPDGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFK FT QIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQ FT SGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRACVVDVLKSRAPVAVPSQSVATGA FT VNDIHTSPYTKDAPLTATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQ FT NDPALVKELVELLWLKGDEPVMVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSES FT LLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVES FT EVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMI FT GPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLSRIDLA FT WSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGM FT DLESADEYLSELRVERRYQRDVY" FT misc_feature complement(237646..237987) FT /note="Pfam match to entry PF00175 oxidored_fad, FT Oxidoreductase FAD/NAD-binding domain, score 158.90, FT E-value 8.7e-44" FT misc_feature complement(238069..238656) FT /note="Pfam match to entry PF00667 FAD_binding, FAD binding FT domain, score 258.50, E-value 9.3e-74" FT misc_feature 239776..240135 FT /note="Pfam match to entry PF01242 PTPS, 6-pyruvoyl FT tetrahydropterin synthase, score 279.80, E-value 3.5e-80" FT CDS 239776..240138 FT /transl_table=11 FT /gene="STY3077" FT /product="putative 6-pyruvoyl tetrahydrobiopterin synthase" FT /EC_number="4.6.1.10" FT /note="Highly similar to Escherichia coli putative FT 6-pyruvoyl tetrahydrobiopterin synthase YgcM SW:PTPS_ECOLI FT (Q46903) (121 aa) fasta scores: E(): 0, 94.2% id in 120 aa" FT /note="Orthologue of E. coli PTPS_ECOLI; Fasta hit to FT PTPS_ECOLI (121 aa), 94% identity in 120 aa overlap" FT /db_xref="GOA:Q8XGC8" FT /db_xref="HSSP:1B66" FT /db_xref="InterPro:IPR007115" FT /db_xref="InterPro:IPR007116" FT /db_xref="UniProtKB/TrEMBL:Q8XGC8" FT /protein_id="CAD06055.1" FT /translation="MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVD FT PHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSA FT VMVKETCTAGCVYRGE" FT CDS complement(240228..241025) FT /transl_table=11 FT /gene="STY3078" FT /note="Similar to hypothetical proteins of archeal origin FT e.g. Pyrococcus abyssi hypothetical 30.2 kDa protein FT pab0518 TR:Q9V0M3 (EMBL:AJ248285) (272 aa) fasta scores: FT E(): 3.5e-26, 38.7% id in 261 aa, and to Methanobacterium FT thermoautotrophicum conserved protein mth1101 TR:O27173 FT (EMBL:AE000880) (260 aa) fasta scores: E(): 2.3e-16, 31.5% FT id in 251 aa, and to Methanococcus jannaschii hypothetical FT protein Mj0448 mj0448 SW:Y448_METJA (Q57890) (256 aa) fasta FT scores: E(): 7.3e-15, 29.4% id in 248 aa, and to FT Archaeoglobus fulgidus conserved hypothetical protein FT af0719 TR:O29539 (EMBL:AE001055) (190 aa) fasta scores: FT E(): 1.2e-06, 24.4% id in 168 aa" FT /db_xref="GOA:Q8Z457" FT /db_xref="InterPro:IPR001279" FT /db_xref="UniProtKB/TrEMBL:Q8Z457" FT /protein_id="CAD06056.1" FT /translation="MALRIRVLLENHKGAGTDKSLKARPGLSLLVEDESTSILFDTGPD FT GSFMQNASAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPNIARERYAAITFL FT GITRKIKKLSCEVDYSRYRMMYTCGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDS FT ILDEGVLIYQSTKGLVIIMGCGHRGIANIVRHCQNITGIKRIYALIGGFHLRCASPFTL FT WRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF" FT misc_feature complement(240468..240965) FT /note="Pfam match to entry PF00753 lactamase_B, FT Metallo-beta-lactamase superfamily, score 18.20, E-value FT 7.5e-05" FT CDS complement(241509..242180) FT /transl_table=11 FT /gene="STY3080" FT /product="conserved hypothetical protein" FT /note="Similar to Escherichia coli hypothetical 25.0 kDa FT protein SW:YGCF_ECOLI (P55139) (223 aa) fasta scores: E(): FT 0, 96.0% id in 223 aa" FT /note="Orthologue of E. coli YGCF_ECOLI; Fasta hit to FT YGCF_ECOLI (223 aa), 96% identity in 223 aa overlap" FT /db_xref="GOA:Q8XEY5" FT /db_xref="InterPro:IPR007197" FT /db_xref="UniProtKB/TrEMBL:Q8XEY5" FT /protein_id="CAD06057.1" FT /translation="MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWD FT KLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPL FT TDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVG FT RVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNI FT A" FT misc_feature complement(242064..242174) FT /note="Pfam match to entry PF02143 RADICAL_ACTIVATING, FT Radical activating enzymes, score 38.80, E-value 1.2e-07" FT CDS complement(242316..243614) FT /transl_table=11 FT /gene="STY3081" FT /gene_synonym="eno" FT /product="enolase" FT /note="Orthologue of E. coli eno (ENO_ECOLI); Fasta hit to FT ENO_ECOLI (431 aa), 99% identity in 431 aa overlap" FT /db_xref="GOA:P64077" FT /db_xref="InterPro:IPR000941" FT /db_xref="InterPro:IPR020809" FT /db_xref="InterPro:IPR020810" FT /db_xref="InterPro:IPR020811" FT /db_xref="UniProtKB/Swiss-Prot:P64077" FT /protein_id="CAD06058.1" FT /translation="MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGS FT REALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKS FT NFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNN FT VDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEA FT LAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELT FT KQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSIL FT IKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSR FT SDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA" FT misc_feature complement(242322..243611) FT /note="Pfam match to entry PF00113 enolase, Enol-ase, score FT 918.50, E-value 1.9e-272" FT misc_feature complement(242559..242600) FT /note="PS00164 Enolase signature" FT CDS complement(243697..245334) FT /transl_table=11 FT /gene="STY3082" FT /gene_synonym="pyrG" FT /product="CTP synthetase" FT /note="Orthologue of E. coli pyrG (PYRG_ECOLI); Fasta hit FT to PYRG_ECOLI (544 aa), 95% identity in 544 aa overlap" FT /db_xref="GOA:P65922" FT /db_xref="InterPro:IPR000991" FT /db_xref="InterPro:IPR004468" FT /db_xref="InterPro:IPR017456" FT /db_xref="InterPro:IPR017926" FT /db_xref="UniProtKB/Swiss-Prot:P65922" FT /protein_id="CAD06059.1" FT /translation="MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYI FT NVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKER FT RGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVD FT IGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERA FT KIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIY FT EEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEI FT LKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNA FT NSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLY FT GASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPE FT FTSTPRDGHPLFAGFVKAANEHQKRQAK" FT misc_feature complement(243730..244437) FT /note="Pfam match to entry PF00117 GATase, Glutamine FT amidotransferase class-I, score 272.10, E-value 7.4e-78" FT misc_feature complement(244180..244215) FT /note="PS00442 Glutamine amidotransferases class-I active FT site" FT CDS complement(245562..246362) FT /transl_table=11 FT /gene="STY3083" FT /product="conserved hypothetical protein" FT /note="Orthologue of E. coli mazG (MAZG_ECOLI); Fasta hit FT to MAZG_ECOLI (263 aa), 94% identity in 262 aa overlap" FT /db_xref="InterPro:IPR004518" FT /db_xref="InterPro:IPR011551" FT /db_xref="UniProtKB/TrEMBL:Q8Z456" FT /protein_id="CAD06060.1" FT /translation="MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYE FT VLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFG FT ELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWT FT TLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAEIALQKA FT NDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL" FT CDS 246970..247557 FT /pseudo FT /transl_table=11 FT /gene="steA" FT /gene_synonym="STY3084" FT /product="fimbrial subunit (pseudogene)" FT /note="Similar to Salmonella typhimurium major fimbrial FT subunit StfA TR:O87657 (EMBL:AF093503) (186 aa) fasta FT scores: E(): 2.8e-11, 55.7% id in 79 aa. Contains an FT in-frame stop at codon 88. The sequence has been checked FT and is believed to be correct" FT CDS 247638..250337 FT /transl_table=11 FT /gene="steB" FT /gene_synonym="STY3086" FT /product="outer membrane usher protein" FT /note="Similar to Salmonella typhimurium outer membrane FT usher protein StfC TR:O87658 (EMBL:AF093503) (885 aa) fasta FT scores: E(): 0, 53.3% id in 891 aa. Contains a possible FT N-terminal signal sequence." FT /db_xref="GOA:Q8Z455" FT /db_xref="InterPro:IPR000015" FT /db_xref="InterPro:IPR018030" FT /db_xref="UniProtKB/TrEMBL:Q8Z455" FT /protein_id="CAD06062.1" FT /translation="MMNNTWKSVLCPIACGVGMLLSASPYSASGKDIEFNTDFLDVKNR FT DNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQ FT LGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDP FT PARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDH FT RDDDESTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQM FT LPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVE FT EQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGW FT SLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRIS FT YSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQ FT GMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYI FT SLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQSAQADGYYSHQG FT ALTDIDLSADYEEGSYRSLSMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPV FT SGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRH FT FDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFW FT DGAAQCEASLPPTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQ FT PAAPVATTTQTPPIPLADNHAVNRKDME" FT misc_feature 247734..250112 FT /note="Pfam match to entry PF00577 Usher, Fimbrial Usher FT proteins, score 994.40, E-value 2.6e-295" FT misc_feature 248586..248618 FT /note="PS01151 Fimbrial biogenesis outer membrane usher FT protein signature" FT CDS 250350..251123 FT /transl_table=11 FT /gene="steC" FT /gene_synonym="STY3087" FT /product="periplasmic fimbrial chaperone" FT /note="Similar to Salmonella typhimurium periplasmic FT fimbrial chaperone StfD TR:O87659 (EMBL:AF093503) (250 aa) FT fasta scores: E(): 0, 52.4% id in 250 aa and to Escherichia FT coli hypothetical fimbrial chaperone SW:YFCS_ECOLI (250 aa) FT fasta scores: E(): 0, 52.1% id in 238 aa" FT /note="Orthologue of E. coli YFCS_ECOLI; Fasta hit to FT YFCS_ECOLI (250 aa), 52% identity in 238 aa overlap" FT /db_xref="GOA:Q8Z454" FT /db_xref="HSSP:1QPP" FT /db_xref="InterPro:IPR001829" FT /db_xref="InterPro:IPR008962" FT /db_xref="InterPro:IPR016147" FT /db_xref="InterPro:IPR016148" FT /db_xref=" |