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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AK317465; SV 1; linear; mRNA; STD; PLN; 1361 BP.
XX
AC   AK317465;
XX
DT   04-FEB-2009 (Rel. 99, Created)
DT   21-APR-2009 (Rel. 100, Last updated, Version 3)
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DE   Arabidopsis thaliana AT1G80290 mRNA, complete cds, clone: RAFL24-07-F15.
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KW   CAP trapper; FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
XX
RN   [1]
RP   1-1361
RA   Fukami-Kobayashi K., Iida K., Kobayashi M., Seki M., Ishida J.,
RA   Nakajima M., Kawashima M., Morosawa T., Toyoda A., Sakaki Y., Carninci P.,
RA   Kawai J., Hayashizaki Y., Shinozaki K.;
RT   ;
RL   Submitted (15-OCT-2008) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Kaoru Fukami-Kobayashi RIKEN, BioResource Center; 3-1-1 Koyadai,
RL   Tsukuba, Ibaraki 305-0074, Japan URL    :http://www.brc.riken.jp/
XX
RN   [2]
RX   DOI; 10.1093/dnares/dsp009
RX   PUBMED; 19423640.
RA   Iida K., Fukami-Kobayashi K., Toyoda A., Sakaki Y., Kobayashi M., Seki M.,
RA   Shinozaki K.;
RT   "Analysis of multiple occurrences of alternative splicing events in
RT   Arabidopsis thaliana using novel sequenced full-length cDNAs";
RL   DNA Res. 16(3):155-164(2009).
XX
CC   An Arabidopsis full-length cDNA library was constructed
CC   essentially as reported previously. (Seki et al. (1998) Plant J.
CC   15:707-720; Seki et al. (2002) Science 296:141-145)
CC   This clone is in a modified pBluescript vector.
CC   Please visit our web site (http://rarge.gsc.riken.jp/) for further
CC   details.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1361
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="1"
FT                   /ecotype="Columbia"
FT                   /mol_type="mRNA"
FT                   /clone_lib="RAFL24"
FT                   /clone="RAFL24-07-F15"
FT                   /note="dark-grown"
FT                   /db_xref="taxon:3702"
FT   CDS             235..1224
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /gene="AT1G80290"
FT                   /note="TAIR description: glycosyltransferase family protein
FT                   47"
FT                   /note="alternative splicing: AT1G80290.1"
FT                   /db_xref="GOA:Q9C975"
FT                   /db_xref="InterPro:IPR015338"
FT                   /db_xref="UniProtKB/TrEMBL:Q9C975"
FT                   /protein_id="BAH20131.1"
FT                   /translation="MGVKSVRFSIWFLFVVTDLVFCRTLSGDPDPCDATNQREFQKLRS
FT                   DQITVLINGYSEYRIPLLQTIVASYSSSSIVSSILVLWGNPSTPDQLLDQLYQNLTQYS
FT                   PGSASISLIQQSSSSLNARFLPRSSVDTRAVLICDDDVEIDQRSLEFAFSVWKSNPDRL
FT                   VGTFVRSHGFDLQGKEWIYTVHPDKYSIVLTKFMMMKQDYLFEYSCKGGVEMEEMRMIV
FT                   DQMRNCEDILMNFVAADRLRAGPIMVGAERVRDWGDARNEEVEERVRDVGLSSRRVEHR
FT                   KRRGNCIREFHRVMGKMPLMYSYGKVVNSVGEQGLCRKAGKLVFCDRD"
XX
SQ   Sequence 1361 BP; 379 A; 253 C; 340 G; 389 T; 0 other;
     gaagatgatg gtcaactcca actagtcaat cggaattcca aatctctaga cggagattct        60
     gatgccggaa tgccatcagc ttccgaggta attttctctt tgcctgtttg ttgacataga       120
     cacacgcacg cttataggaa acgaaattgc gatccatcct cgaatgctac atccatcgct       180
     cttctctgtt ttatcgatca aatcggaact aactgatagg atagttaggc tgatatggga       240
     gtcaaatcgg tgaggttctc tatctggttc cttttcgttg ttacggatct cgtgttttgt       300
     cgcacgctct caggggatcc agatccatgt gatgcaacga accagagaga atttcaaaaa       360
     ctcagatcgg atcagatcac cgttctaatc aatggttact cagaataccg gattcctctt       420
     ctgcaaacca tcgtggcctc ttattcttca tcctcgatcg tatcctccat cttagtccta       480
     tggggtaacc ctagcacacc tgatcaacta cttgaccagt tgtatcagaa tctgactcag       540
     tattcgcctg gttctgcttc catctctcta attcagcaat cttcgagcag cctcaacgct       600
     agattcctcc ctcgttcctc tgtagacact cgtgctgttt tgatatgtga tgatgacgtc       660
     gagattgacc agagatcgtt ggagtttgcg ttttcagtgt ggaagtcgaa tcctgatcgc       720
     cttgtaggaa cgtttgtgag gtcacacggt ttcgatttgc aggggaaaga gtggatatac       780
     actgttcatc cagataaata ctcgattgtg ttgaccaagt tcatgatgat gaaacaggat       840
     tatctgtttg agtatagctg caagggaggt gtggagatgg aggagatgag gatgattgtg       900
     gaccaaatgc gtaactgcga ggatatactg atgaattttg tagctgcaga taggttaagg       960
     gcagggccaa tcatggttgg agctgagaga gttagggatt ggggagatgc gcgtaacgaa      1020
     gaagtagaag agagagtaag agacgtggga ttgagcagta gaagagtgga acataggaag      1080
     agaagaggga attgcattag ggagtttcat agagttatgg ggaagatgcc attgatgtat      1140
     agttatggta aagttgtcaa ctctgttggg gaacaaggat tgtgtcgtaa agccggcaaa      1200
     cttgtctttt gtgatcgaga ttgaccgttt tttttttgtg tgtgtgtcaa aatatcgaca      1260
     ctaataggat gtgtaagctc atcatcgtgt aatagaaatt ggcaactagc agcaagttaa      1320
     caacatggaa accaagtttt gaaccaaaaa aaaaaaaaaa a                          1361
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