 |
|
EBI DbfetchID AK229111; SV 1; linear; mRNA; STD; PLN; 2236 BP. XX AC AK229111; XX DT 27-JUL-2006 (Rel. 88, Created) DT 14-NOV-2006 (Rel. 89, Last updated, Version 2) XX DE Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: DE RAFL16-39-F22. XX KW CAP trapper; FLI_CDNA. XX OS Arabidopsis thaliana (thale cress) OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; OC eurosids II; Brassicales; Brassicaceae; Arabidopsis. XX RN [1] RP 1-2236 RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T., RA Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., RA Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., RA Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., RA Hayashizaki Y., Shinozaki K.; RT ; RL Submitted (26-JUL-2006) to the EMBL/GenBank/DDBJ databases. RL Motoaki Seki, RIKEN Plant Science Center; 1-7-22 Suehiro-cho, Tsurumi-ku, RL Yokohama, Kanagawa 230-0045, Japan (E-mail:mseki@psc.riken.jp, RL URL:http://rarge.gsc.riken.jp/, Tel:81-45-503-9625, Fax:81-45-503-9586) XX RN [2] RA Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T., RA Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., RA Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., RA Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., RA Hayashizaki Y., Shinozaki K.; RT "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs"; RL Unpublished. XX CC An Arabidopsis full-length cDNA library was constructed essentially CC as reported previously (Seki et al. (1998) Plant J. 15:707-720; CC Seki et al. (2002) Science 296:141-145). CC This clone is in a modified pBluescript vector. CC Please visit our web site (http://rarge.gsc.riken.jp/) for further CC details. XX FH Key Location/Qualifiers FH FT source 1..2236 FT /organism="Arabidopsis thaliana" FT /chromosome="5" FT /ecotype="Columbia" FT /mol_type="mRNA" FT /clone="RAFL16-39-F22" FT /note="common name: thale cress" FT /db_xref="taxon:3702" FT misc_difference 2 FT /replace="g" FT /note="compared to genomic sequence" FT CDS 204..2168 FT /codon_start=1 FT /gene="At5g25820" FT /product="hypothetical protein" FT /db_xref="GOA:Q3E945" FT /db_xref="InterPro:IPR004263" FT /db_xref="UniProtKB/TrEMBL:Q3E945" FT /protein_id="BAF00988.1" FT /translation="MRRESPWLWKVESRRLLWLLGLTFALIVTFQYIELPYAISSIFSS FT TKIPISRNSTSLIGNSTSAIAPSPAGDEEEVEVDQIYDSSGNATAPAISPTTATLPPLL FT PILKENATAPTANAKAPGLNPSLVKDHATAPSPSANPPAALPGLNPSLVKENATAPAPS FT VKSPVALPILNPSTVKENATAPVASAKAPVALPSINPSPVMKNETLPTTSKVPERNPTK FT KNVGDASPIVRFVPDVKENAKMPGFGVMSISEMSKQLRQNRISHNRLAKKPKWVTKPDL FT ELLQAKYDIENAPIDDKDPFLYAPLYRNVSMFKRSYELMEKILKVYAYKEGNKPIMHSP FT ILRGIYASEGWFMNIIESNNNKFVTKDPAKAHLFYLPFSSRMLEVTLYVQDSHSHRNLI FT KYLKDYIDFISAKYPFWNRTSGADHFLAACHDWAPSETRKHMAKSIRALCNSDVKEGFV FT FGKDTSLPETFVRDPKKPLSNMGGKSANQRPILAFFAGKPDHGYLRPILLSYWGNNKDP FT DLKIFGKLPRTKGNKNYLQFMKTSKYCICAKGFEVNSPRVVEAIFYDCVPVIISDNFVP FT PFFEVLNWESFAIFIPEKDIPNLKKILMSIPESRYRSMQMRVKKVQKHFLWHAKPEKYD FT MFHMILHSIWYNRVFQISV" FT misc_difference 2225 FT /replace="t" FT /note="compared to genomic sequence" XX SQ Sequence 2236 BP; 663 A; 487 C; 450 G; 636 T; 0 other; gtgtttctcg taaaccagag atactcatta ggaagaaaat cagacaaagg agaaactatt 60 ttttgtcatc tcttgtttgg tggtttatat tttggttgtg agtcctgtgt tgacctataa 120 gccgatcaat ttcgacatgc ctcttttgat ctttgtttga cttctgatca acttctcaac 180 tttgtacttg caaggcttga aaaatgaggc gtgagtctcc atggctatgg aaagtagaaa 240 gcagacggct tctatggcta ttaggactca catttgctct cattgttacc tttcaataca 300 tcgagctacc gtacgctatc tcatccatct tttcttccac caagattccc atttcaagaa 360 actcaacttc acttataggt aactcgactt ccgctatagc gccgagtccc gcgggagatg 420 aggaagaagt tgaggttgat cagatatatg atagtagcgg aaatgccact gcccccgcca 480 tttcgcctac taccgctact ttaccgcctt tattacctat tttaaaggaa aatgcaaccg 540 cgcctaccgc taatgcaaag gcccctggtt taaacccgtc tctagtaaag gatcacgcta 600 ccgcgccttc tcctagcgct aatcccccag ctgcattacc tggtttaaac ccgtctctag 660 tcaaggaaaa cgctaccgcg cctgctccta gcgtaaagtc cccggttgca ttacctattc 720 taaacccgtc tacggttaaa gaaaatgcaa ccgcgcctgt ggctagtgca aaggccccgg 780 ttgcattacc tagtataaac ccgtctccag taatgaaaaa cgaaacattg cctaccacta 840 gcaaggtacc ggaaaggaat ccaactaaaa aaaatgttgg tgatgcttct cctattgtga 900 gatttgttcc tgatgtaaag gagaatgcga aaatgcctgg tttcggagtg atgtcaatat 960 ccgagatgag caagcagttg cgtcaaaacc gtatttctca taatcgtcta gcaaagaaac 1020 caaagtgggt aacgaaacct gacttagagc ttttacaagc aaaatatgat atcgagaatg 1080 cacctatcga tgacaaagat cctttcctct acgctcctct ttatcgcaat gtttccatgt 1140 tcaaaaggag ctatgagttg atggagaaga tattaaaggt ttatgcttac aaagaaggaa 1200 ataaaccaat aatgcatagt ccaatactca gagggattta tgcatcagaa ggctggttta 1260 tgaatattat tgaatccaac aacaacaaat ttgttacaaa ggaccctgca aaagctcatc 1320 ttttctattt accctttagc tcccggatgc ttgaggtgac tctatatgtt caggactctc 1380 acagtcaccg caatcttatt aagtatctta aagactatat agacttcatt tctgctaaat 1440 accctttttg gaatcgaact tccggtgccg atcatttcct tgccgcctgc catgattggg 1500 ctccatcgga gacgcggaag catatggcaa agagtataag ggcattgtgc aactcggatg 1560 tgaaagaagg atttgttttt gggaaggata catctttacc agaaacattc gttagagatc 1620 ccaagaaacc actaagtaac atgggtggaa agtccgcgaa ccaaagaccg atacttgcgt 1680 tctttgctgg taaacccgac cacgggtatc tcaggccaat cctcctctca tattggggta 1740 acaacaaaga tcccgacttg aaaatattcg gtaaacttcc gcggactaaa ggaaacaaga 1800 actaccttca gttcatgaag acgagcaagt actgcatttg cgccaaaggc tttgaagtga 1860 atagtccgag agtggtagag gccattttct atgattgtgt tccggtcatc atatctgata 1920 actttgtccc gccatttttc gaggttttga attgggaatc atttgcgatt tttataccgg 1980 agaaagatat cccgaatttg aagaagattc tgatgtcgat accggaaagc cggtaccggt 2040 caatgcagat gagagtgaag aaagttcaaa agcattttct gtggcatgct aagccagaga 2100 agtatgatat gtttcacatg attcttcatt caatttggta taaccgagtt ttccaaattt 2160 ctgtttaaaa attttgttca acaattcaat gtacattttt tacagataaa atttctgagt 2220 aaacccaaaa aaaaaa 2236 // |
|