EBI Dbfetch

ID   AK228299; SV 1; linear; mRNA; STD; PLN; 1919 BP.
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AC   AK228299;
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DT   27-JUL-2006 (Rel. 88, Created)
DT   14-NOV-2006 (Rel. 89, Last updated, Version 2)
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DE   Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone:
DE   RAFL14-73-N18.
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KW   CAP trapper; FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1919
RA   Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T.,
RA   Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K.,
RA   Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K.,
RA   Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
RA   Hayashizaki Y., Shinozaki K.;
RT   ;
RL   Submitted (26-JUL-2006) to the EMBL/GenBank/DDBJ databases.
RL   Motoaki Seki, RIKEN Plant Science Center; 1-7-22 Suehiro-cho, Tsurumi-ku,
RL   Yokohama, Kanagawa 230-0045, Japan (E-mail:mseki@psc.riken.jp,
RL   URL:http://rarge.gsc.riken.jp/, Tel:81-45-503-9625, Fax:81-45-503-9586)
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RN   [2]
RA   Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T.,
RA   Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K.,
RA   Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K.,
RA   Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
RA   Hayashizaki Y., Shinozaki K.;
RT   "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs";
RL   Unpublished.
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CC   An Arabidopsis full-length cDNA library was constructed essentially
CC   as reported previously (Seki et al. (1998) Plant J. 15:707-720;
CC   Seki et al. (2002) Science 296:141-145).
CC   This clone is in a modified pBluescript vector.
CC   Please visit our web site (http://rarge.gsc.riken.jp/) for further
CC   details.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1919
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="3"
FT                   /ecotype="Columbia"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL14-73-N18"
FT                   /note="common name: thale cress"
FT                   /db_xref="taxon:3702"
FT   CDS             245..1744
FT                   /codon_start=1
FT                   /gene="At3g03650"
FT                   /product="hypothetical protein"
FT                   /db_xref="GOA:Q9SS65"
FT                   /db_xref="InterPro:IPR004263"
FT                   /db_xref="UniProtKB/TrEMBL:Q9SS65"
FT                   /protein_id="BAF00242.1"
FT                   /translation="MGEKTNSRYLGVIITRKSIIFLFISIITVLSWFFIFSSTNPNRVL
FT                   DHISVSESTDVPLIIIKNSNSSPQNNAPKPQNREGAETEEPIKENRGGTKTESSMNQNR
FT                   GETLRCIQRVSPSPRPLKVYMYDMSPEFHFGLLGWKPERNGVVWPDIRVNVPHHPGGLN
FT                   LQHSVEYWLTLDLLFSELPEDSRSSRAAIRVKNSSEADVVFVPFFSSLSYNRFSKVNQK
FT                   QKKSQDKELQENVVKYVTSQKEWKTSGGKDHVIMAHHPNSMSTARHKLFPAMFVVADFG
FT                   RYSPHVANVDKDIVAPYKHLVPSYVNDTSGFDGRPILLYFQGAIYRKAGGFVRQELYNL
FT                   LKEEKDVHFSFGSVRNHGISKAGEGMRSSKFCLNIAGDTPSSNRLFDAIASHCIPVIIS
FT                   DDIELPYEDVLNYNEFCLFVRSSDALKKGFLMGLVRSIGREEYNKMWLRLKEVERYFDL
FT                   RFPVKDDEGDYAVQMIWKAVARKAPLVKMKVHRFQRFTRPF"
FT   misc_difference 631
FT                   /replace="t"
FT                   /note="compared to genomic sequence"
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SQ   Sequence 1919 BP; 555 A; 403 C; 404 G; 557 T; 0 other;
     cttcggcgtt ttcatcgttt ctcatctacc tcgaaatttt ctcgtcactc taatcaaaaa        60
     tctcacttcg ttattttctc gggaaaaatt tcccgatcac taaacctagt ttttagatat       120
     tttctctcct ggattctgga tctacacaat ctttcttcct cttcttctat gaatctgttc       180
     atcgtaattt cagattcttg atatatgatt ccttttctcc aatctcttct cttagctctc       240
     agagatgggt gagaaaacaa actcacgtta tctcggtgta atcatcactc gaaaatctat       300
     aattttcttg ttcatatcaa tcatcaccgt cctttcttgg ttttttatct tttcttccac       360
     aaaccctaac cgagttctcg atcacatctc agtatcagaa tccacagatg tacctctcat       420
     catcatcaag aactcaaaca gttctccaca aaacaacgca ccaaaacccc aaaacagaga       480
     aggagcagaa acagaggaac ccattaaaga aaacagagga ggaacaaaaa cagagtcatc       540
     catgaatcaa aacagaggcg aaaccctccg gtgtatccaa agggtttctc cttctccaag       600
     gccattgaaa gtctacatgt atgatatgag cccagagttt cattttgggt tattgggttg       660
     gaaaccagag agaaacggtg tcgtttggcc tgatatcaga gtcaatgttc ctcaccatcc       720
     aggtggtctt aacttgcagc acagtgttga gtattggctc acattagatc ttttgttctc       780
     tgagcttcca gaagattcta gaagctctcg ggccgcgata cgtgtaaaga actcgagcga       840
     agctgatgtc gtgttcgtgc ccttcttctc ttcattgagc tataaccgat tctctaaggt       900
     taaccaaaag cagaagaaga gccaggacaa agagttgcag gaaaatgtgg tgaaatacgt       960
     aacgtcccaa aaagagtgga agacctcagg agggaaggat catgtgatca tggcgcatca      1020
     tccgaatagt atgtcgacgg caaggcataa gctatttccg gcgatgtttg tggtcgctga      1080
     ctttggtaga tactcgccac atgttgccaa tgttgacaaa gacattgtgg ctccatacaa      1140
     acaccttgtt ccatcgtatg ttaatgacac atcgggcttt gatggccgtc cgatcttgct      1200
     ctacttccaa ggagccatct accgcaaagc tggtggattt gtgagacaag agctatataa      1260
     tcttctcaaa gaagaaaaag acgtccactt ctctttcgga agcgtaagga accacggcat      1320
     atctaaagcc ggcgaaggaa tgagatcgtc caagttctgt ctcaacatag ccggggatac      1380
     accatcctcg aatcgcctct tcgacgccat agctagtcac tgtatacccg tgatcattag      1440
     cgatgacatc gagttaccat atgaggatgt cctcaactac aatgagttct gtctctttgt      1500
     cagatcatca gacgctttaa agaaagggtt tctgatgggt cttgtcagga gtattggcag      1560
     agaagagtat aataagatgt ggcttcggtt gaaggaagtg gagaggtatt tcgatttgcg      1620
     ttttccggtg aaggatgacg agggagatta tgcagttcag atgatttgga aagctgttgc      1680
     caggaaagct cctttggtga agatgaaggt tcacagattt cagaggttta caaggccttt      1740
     ttagggtttc taatgatatt ttgggaattt gatttagata gaaagataat gaatacagtt      1800
     tccaatgcaa ccatgtgaat gtttattaca gtcagccatg tgaagaaaga ggttacttga      1860
     tctagacgat gcacaatggt tacgtgtgat ataagttact tctttattta aaaaaaaaa       1919
//