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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AK228181; SV 1; linear; mRNA; STD; PLN; 980 BP.
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AC   AK228181;
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DT   27-JUL-2006 (Rel. 88, Created)
DT   27-JUL-2006 (Rel. 88, Last updated, Version 1)
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DE   Arabidopsis thaliana mRNA for putative endochitinase, complete cds, clone:
DE   RAFL14-63-D19.
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KW   CAP trapper; FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-980
RA   Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T.,
RA   Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K.,
RA   Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K.,
RA   Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
RA   Hayashizaki Y., Shinozaki K.;
RT   ;
RL   Submitted (26-JUL-2006) to the EMBL/GenBank/DDBJ databases.
RL   Motoaki Seki, RIKEN Plant Science Center; 1-7-22 Suehiro-cho, Tsurumi-ku,
RL   Yokohama, Kanagawa 230-0045, Japan (E-mail:mseki@psc.riken.jp,
RL   URL:http://rarge.gsc.riken.jp/, Tel:81-45-503-9625, Fax:81-45-503-9586)
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RN   [2]
RA   Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T.,
RA   Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K.,
RA   Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K.,
RA   Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
RA   Hayashizaki Y., Shinozaki K.;
RT   "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs";
RL   Unpublished.
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CC   An Arabidopsis full-length cDNA library was constructed essentially
CC   as reported previously (Seki et al. (1998) Plant J. 15:707-720;
CC   Seki et al. (2002) Science 296:141-145).
CC   This clone is in a modified pBluescript vector.
CC   Please visit our web site (http://rarge.gsc.riken.jp/) for further
CC   details.
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FH   Key             Location/Qualifiers
FH
FT   source          1..980
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="2"
FT                   /ecotype="Columbia"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL14-63-D19"
FT                   /note="common name: thale cress"
FT                   /db_xref="taxon:3702"
FT   CDS             16..810
FT                   /codon_start=1
FT                   /gene="At2g43590"
FT                   /product="putative endochitinase"
FT                   /db_xref="GOA:O24658"
FT                   /db_xref="HSSP:1MMC"
FT                   /db_xref="InterPro:IPR000726"
FT                   /db_xref="InterPro:IPR001002"
FT                   /db_xref="InterPro:IPR016283"
FT                   /db_xref="InterPro:IPR018371"
FT                   /db_xref="UniProtKB/TrEMBL:O24658"
FT                   /protein_id="BAF00136.1"
FT                   /translation="MAFTKISLVLLLCLLGFFSETVKSQNCGCAPNLCCSQFGYCGTDD
FT                   AYCGVGCRSGPCRGSGTPTGGSVGSIVTQGFFNNIINQAGNGCAGKRFYTRDSFVNAAN
FT                   TFPNFANSVTRREIATMFAHFTHETGHFCYIEEINGATRNYCQSSNTQYPCAPGKGYFG
FT                   RGPIQLSWNYNYGACGQSLGLDLLRQPELVGSNPTVAFRTGLWFWMNSVRPVLNQGFGA
FT                   TIRAINGMECNGGNSGAVNARIGYYRDYCGQLGVDPGPNLSC"
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SQ   Sequence 980 BP; 267 A; 220 C; 224 G; 269 T; 0 other;
     acaataacac aaaacatggc tttcacaaaa atctccttag tccttcttct ctgcctctta        60
     ggtttctttt ctgaaactgt caagtctcaa aactgcggtt gcgctccaaa cctctgttgc       120
     agtcagttcg gttactgtgg taccgacgat gcatactgcg gtgttggatg ccgatcaggt       180
     ccttgtagag gtagtggaac cccgaccgga gggtcggtcg gtagcattgt gacacaaggt       240
     ttctttaaca atattatcaa ccaagctggt aatggttgcg cggggaaaag attctacacc       300
     cgtgactctt tcgttaacgc cgctaatact ttccccaact ttgccaattc tgttaccaga       360
     cgtgaaattg ctaccatgtt tgctcatttc actcacgaga ccggacattt ctgctacata       420
     gaagagatta acggagcaac acgtaactac tgccagagca gcaacacaca atacccatgt       480
     gcaccgggaa aaggctactt cggtcgtggt ccgatccaac tatcatggaa ctacaactac       540
     ggagcgtgtg gtcaaagtct cggtcttgac cttctacgcc agcccgaact tgtgggtagc       600
     aacccaactg tagctttcag gacgggtttg tggttttgga tgaatagcgt aaggccggtt       660
     ctgaaccaag ggtttggagc caccattaga gctattaatg gaatggaatg taacggtggt       720
     aattccggtg cagtcaacgc aaggattgga tactatagag actattgtgg acagcttggt       780
     gtggaccctg gtcctaacct tagttgctaa aaaacctttg aacccaaaca cggacatatg       840
     tgacgtggca tgtaataagt gagatatact aaaatttcac acgtatgtac tttatgtcgg       900
     gtctcggtgt tccctgcgtc acaagcaaaa aattgttgta ataaacttgt gaaagtgatt       960
     ttcttttctt aaaaaaaaaa                                                   980
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