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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AK228095; SV 1; linear; mRNA; STD; PLN; 1331 BP.
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AC   AK228095;
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DT   27-JUL-2006 (Rel. 88, Created)
DT   14-NOV-2006 (Rel. 89, Last updated, Version 2)
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DE   Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone:
DE   RAFL14-57-K20.
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KW   CAP trapper; FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1331
RA   Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T.,
RA   Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K.,
RA   Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K.,
RA   Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
RA   Hayashizaki Y., Shinozaki K.;
RT   ;
RL   Submitted (26-JUL-2006) to the EMBL/GenBank/DDBJ databases.
RL   Motoaki Seki, RIKEN Plant Science Center; 1-7-22 Suehiro-cho, Tsurumi-ku,
RL   Yokohama, Kanagawa 230-0045, Japan (E-mail:mseki@psc.riken.jp,
RL   URL:http://rarge.gsc.riken.jp/, Tel:81-45-503-9625, Fax:81-45-503-9586)
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RN   [2]
RA   Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T.,
RA   Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K.,
RA   Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K.,
RA   Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
RA   Hayashizaki Y., Shinozaki K.;
RT   "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs";
RL   Unpublished.
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CC   An Arabidopsis full-length cDNA library was constructed essentially
CC   as reported previously (Seki et al. (1998) Plant J. 15:707-720;
CC   Seki et al. (2002) Science 296:141-145).
CC   This clone is in a modified pBluescript vector.
CC   Please visit our web site (http://rarge.gsc.riken.jp/) for further
CC   details.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1331
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="3"
FT                   /ecotype="Columbia"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL14-57-K20"
FT                   /note="common name: thale cress"
FT                   /db_xref="taxon:3702"
FT   misc_difference 11^12
FT                   /replace="t"
FT                   /note="compared to genomic sequence"
FT   CDS             52..1206
FT                   /codon_start=1
FT                   /gene="At3g18170"
FT                   /product="hypothetical protein"
FT                   /db_xref="GOA:Q84WJ6"
FT                   /db_xref="InterPro:IPR007657"
FT                   /db_xref="UniProtKB/TrEMBL:Q84WJ6"
FT                   /protein_id="BAF00054.1"
FT                   /translation="MKPICTKLARTEFCELNGDVRVHGKSATVSAAITFAFSGNSTWHI
FT                   RPYARKGDTVAMKRVREWTVKLEQNADQLENANFSRCVRNHSVPAMIFSLGGYSMNNFH
FT                   DFTDIVIPLYTTARRFNGEVQFLVTNKSPSWINKFKELVRKLSNYEVIYIDEEDETHCF
FT                   SSVTVGLTRHREYFKELTIDPSNSEYSMSDFRSFLRDTYSLRNDAVATRQIRRRRPRIL
FT                   ILARGRSRAFVNTGEIARAARQIGFKVVVAEANIGIAKFAQTVNSCDVMLGVHGAGLTN
FT                   MVFLPENAVVIQVLPIGGFEWLAKTDFEKPSEGMNLRYLEYKIAVEESTLVKKYGRDHE
FT                   IVRDPSAVAKHGWEMFKSVYLVQQNVSIDINRFKPVLVKALELL"
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SQ   Sequence 1331 BP; 380 A; 266 C; 358 G; 327 T; 0 other;
     ctaattttgt ctttgggtga attttcagat gaaaataaat tggagaaaac tatgaaacct        60
     atatgcacca agctagcaag aacagagttc tgtgaattaa acggcgacgt aagagtccac       120
     ggtaagtccg cgactgtttc tgctgcgatc acgtttgcgt tttcgggaaa ttccacgtgg       180
     catataagac cttacgcgcg aaaaggtgac acggtggcaa tgaagcgcgt gagagaatgg       240
     acggtgaaat tggaacaaaa cgctgaccaa ttagaaaacg ctaatttctc gcgttgcgtt       300
     aggaatcaca gcgttccggc gatgattttc tctctcggag gctactcgat gaacaatttc       360
     cacgatttca ccgatatagt gattcctctg tacacgacgg cgcgtcgatt caacggagaa       420
     gtacagtttc tcgtgacgaa caagagtcca tcgtggatca acaaatttaa ggaattagtg       480
     aggaaactct ctaattacga agtgatttac atcgacgaag aagacgaaac gcattgtttc       540
     agcagcgtca ccgtcggtct cactcgccac cgtgagtatt tcaaagagtt gacgatcgat       600
     ccttcgaatt cggagtattc aatgtccgat ttccggagtt ttctaagaga cacctactcg       660
     ttgagaaacg acgccgtggc tacgagacag atccggcggc ggaggccacg gattctgatt       720
     ttggctagag gcagatcgcg agcgttcgta aacaccggcg aaatcgcgag agcggcgaga       780
     cagatcggat tcaaagtcgt ggtggcggaa gcgaacatcg gaatcgcgaa attcgcgcaa       840
     acggtgaatt cctgcgacgt gatgctcggc gttcacggcg cggggctgac gaacatggtg       900
     ttcttgccgg agaacgcggt ggtgattcag gttcttccga tcggtggatt cgagtggctt       960
     gcgaaaacgg attttgagaa accttcggag ggaatgaatc tgaggtactt ggagtacaag      1020
     atcgcggtgg aggagagcac gctggtgaag aagtacggac gcgaccacga aatcgtgaga      1080
     gatccatcgg cggttgcaaa acacgggtgg gaaatgttca aatcggttta tttggtacaa      1140
     cagaacgtga gtattgatat aaaccggttc aagccggttc ttgtcaaagc tcttgagtta      1200
     ttgtagagag cctagaggca gtcgatgtaa atcatatatt taccgcatcc atatactgta      1260
     aattcttgta gttggaatgt tggatcgtaa tattgttatc ataaaacaat tatatttatc      1320
     gaaaaaaaaa a                                                           1331
//
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