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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AK227539; SV 1; linear; mRNA; STD; PLN; 848 BP.
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AC   AK227539;
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DT   27-JUL-2006 (Rel. 88, Created)
DT   14-NOV-2006 (Rel. 89, Last updated, Version 2)
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DE   Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone:
DE   RAFL14-14-N18.
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KW   CAP trapper; FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-848
RA   Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T.,
RA   Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K.,
RA   Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K.,
RA   Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
RA   Hayashizaki Y., Shinozaki K.;
RT   ;
RL   Submitted (26-JUL-2006) to the EMBL/GenBank/DDBJ databases.
RL   Motoaki Seki, RIKEN Plant Science Center; 1-7-22 Suehiro-cho, Tsurumi-ku,
RL   Yokohama, Kanagawa 230-0045, Japan (E-mail:mseki@psc.riken.jp,
RL   URL:http://rarge.gsc.riken.jp/, Tel:81-45-503-9625, Fax:81-45-503-9586)
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RN   [2]
RA   Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T.,
RA   Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K.,
RA   Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K.,
RA   Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
RA   Hayashizaki Y., Shinozaki K.;
RT   "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs";
RL   Unpublished.
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CC   An Arabidopsis full-length cDNA library was constructed essentially
CC   as reported previously (Seki et al. (1998) Plant J. 15:707-720;
CC   Seki et al. (2002) Science 296:141-145).
CC   This clone is in a modified pBluescript vector.
CC   Please visit our web site (http://rarge.gsc.riken.jp/) for further
CC   details.
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FH   Key             Location/Qualifiers
FH
FT   source          1..848
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="1"
FT                   /ecotype="Columbia"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL14-14-N18"
FT                   /note="common name: thale cress"
FT                   /db_xref="taxon:3702"
FT   misc_difference 4
FT                   /replace="a"
FT                   /note="compared to genomic sequence"
FT   CDS             242..589
FT                   /codon_start=1
FT                   /gene="At1g08280"
FT                   /product="hypothetical protein"
FT                   /db_xref="UniProtKB/TrEMBL:Q84W00"
FT                   /protein_id="BAE99537.1"
FT                   /translation="MCARIVKYYSVKKFLEEKKAKGFVDWSKDHEGSLFHYSSGMQAVM
FT                   LAVGICEKVSVFGFGKLNSTKHHYHTNQKAELKLHDYEAEYRLYRDLENSPRAIPFLPK
FT                   EFKIPLVQVYH"
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SQ   Sequence 848 BP; 262 A; 141 C; 169 G; 276 T; 0 other;
     acctccttcc tttaacttca tttgaaaact ttctttccct aaccaagaaa ccaacaatgt        60
     caatgtcgtc tccttctttt tgacttcaat tttacatttt tttatgtttt aacttccttg       120
     ctaatttaga atcatgagtt ttctaaagct cctgtgaaga aggttggatc gaaaacaaat       180
     atatctttca taaatagtaa cattttgcat caatgtggga gaagggagag ttgctattgt       240
     catgtgtgct agaatcgtga agtattactc ggtgaagaag ttcttggaag agaagaaagc       300
     gaaagggttt gtcgattgga gtaaagatca tgaaggctcg ttgtttcact attcgtcggg       360
     tatgcaggct gtgatgcttg cagtggggat ttgtgagaaa gttagtgtct tcgggtttgg       420
     gaagttgaat tcaaccaagc accattacca tactaatcag aaagcagagc tgaagcttca       480
     tgactatgaa gcagagtata gattgtatcg agacctggaa aacagtccca gggccattcc       540
     attcttacca aaagaattca agatcccttt ggtacaagtt taccattgaa tatacatata       600
     taccatcaag agttttgtca tgtagttatt gttgttcaag cgaagaagct tgttggcaag       660
     agtgtcgttt tgtccaagtc ccaaagattt tgcttcagat tgggcagtga agatgcaaca       720
     ctttcccaat ggtaagagta ctctttacaa tttttagatt tgtgttgtca cacatattga       780
     aatatatata tggtatattt ggacgatatt ctcacatcaa tataaaccaa aatcattcaa       840
     aaaaaaaa                                                                848
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