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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AK227442; SV 1; linear; mRNA; STD; PLN; 1830 BP.
XX
AC   AK227442;
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DT   27-JUL-2006 (Rel. 88, Created)
DT   27-JUL-2006 (Rel. 88, Last updated, Version 1)
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DE   Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone:
DE   RAFL14-08-I04.
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KW   CAP trapper; FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1830
RA   Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T.,
RA   Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K.,
RA   Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K.,
RA   Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
RA   Hayashizaki Y., Shinozaki K.;
RT   ;
RL   Submitted (26-JUL-2006) to the EMBL/GenBank/DDBJ databases.
RL   Motoaki Seki, RIKEN Plant Science Center; 1-7-22 Suehiro-cho, Tsurumi-ku,
RL   Yokohama, Kanagawa 230-0045, Japan (E-mail:mseki@psc.riken.jp,
RL   URL:http://rarge.gsc.riken.jp/, Tel:81-45-503-9625, Fax:81-45-503-9586)
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RN   [2]
RA   Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T.,
RA   Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K.,
RA   Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K.,
RA   Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
RA   Hayashizaki Y., Shinozaki K.;
RT   "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs";
RL   Unpublished.
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CC   An Arabidopsis full-length cDNA library was constructed essentially
CC   as reported previously (Seki et al. (1998) Plant J. 15:707-720;
CC   Seki et al. (2002) Science 296:141-145).
CC   This clone is in a modified pBluescript vector.
CC   Please visit our web site (http://rarge.gsc.riken.jp/) for further
CC   details.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1830
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="5"
FT                   /ecotype="Columbia"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL14-08-I04"
FT                   /note="common name: thale cress"
FT                   /db_xref="taxon:3702"
FT   CDS             214..1557
FT                   /codon_start=1
FT                   /gene="At5g39990"
FT                   /product="hypothetical protein"
FT                   /db_xref="GOA:Q9FLD7"
FT                   /db_xref="InterPro:IPR003406"
FT                   /db_xref="UniProtKB/TrEMBL:Q9FLD7"
FT                   /protein_id="BAE99445.1"
FT                   /translation="MKKLRSYYSNVRHHQNHHHHHHHHSNIVSSERKWIFFPLLIGSIF
FT                   ALFLLFLTTTLTSPTGGVRFLPFTRPVLLTGSGSSAFVESKIKPQQISSLPSPPRFAYL
FT                   ISGSAGDGKSLRRTLLALYHPNNRYVVHLDRESSREEREELHGYIKNSSLFRRFMNVHM
FT                   IEKANLVTYRGPTMVANTLHAAAILLREGADWDWFINLSSSDYPLVTQDDLLHIFSHLP
FT                   RDLNFIDHTSNIGWKASQRAKPVIIDPGLYLNKKSDVFWVTQRRSIPTAFKLFTGSAWM
FT                   ALSRPFVDYCIWGWDNLPRTVLMYYSNFLSSPEGYFHTVLCNAEEFRNTTVNSDLHFIS
FT                   WDNPPKQHPHHLTLTDMTKMVNSNAPFARKFRREDPVLDKIDDELLNRGPGMITPGGWC
FT                   IGSHENGSDPCAVIGDTDVIRPGPGARRLENLVTSLLSTENFRSKQCK"
XX
SQ   Sequence 1830 BP; 506 A; 382 C; 355 G; 587 T; 0 other;
     atttccttct tcttcagttc ctccttcttc aatctctcta ttctcttact aacgttattt        60
     cttcaatctc attgatcaaa aaaaaccaaa accctaatct gcaaaaatct caatttcctc       120
     caaaagtttc agtttttaaa aatgggtttt cttcttttgt aacgaaaaaa tgtgtcaaac       180
     tttgaattga ccattttttt ttataaggat tcgatgaaga aattgagaag ctattactca       240
     aatgtgagac atcatcagaa tcaccatcat catcaccatc atcatagcaa cattgtttct       300
     tcagagagga aatggatatt tttccctcta ttgattggtt caatcttcgc tttgttctta       360
     ctcttcctca caacaaccct aacttcacca accggaggag tccgatttct cccttttacc       420
     cgacccgttt tgttaaccgg atctggttca tcagctttcg ttgaatccaa aatcaaacct       480
     caacaaatct catcactccc gtcgccaccg cgttttgctt acttgatttc tggatccgcc       540
     ggcgacggga aatctctccg gcgaactctt ttggctcttt accatccgaa taatcggtat       600
     gttgttcatt tagatagaga atcttcgcgt gaggagagag aggagcttca tggatatatc       660
     aaaaactcgt ctttgtttcg aaggtttatg aatgttcata tgattgagaa agctaatctt       720
     gtcacgtatc gtggacctac tatggttgcc aatacacttc acgccgctgc gattttgctt       780
     agagaaggag ctgattggga ttggtttatc aatcttagct cttctgacta tcctttagtg       840
     actcaagatg atttgttgca tatcttttcg catttgccgc gggatttgaa cttcattgat       900
     catactagta acattggatg gaaagcatca caaagagcaa aaccggtgat tatagatcct       960
     ggactgtatt tgaacaagaa atctgatgtt ttttgggtta cgcaaagacg gagcatccca      1020
     acagcattca agcttttcac aggctctgct tggatggcgt tatctcggcc attcgtcgac      1080
     tattgtatat ggggttggga taatctacct cgtacggtct taatgtatta ctcgaatttt      1140
     ctctcttctc cagaaggata ttttcacact gttctctgca acgctgagga attcagaaac      1200
     acaacggtaa atagcgacct gcacttcata tcgtgggaca atccgcctaa gcagcatcca      1260
     caccatctca ctcttacaga catgaccaaa atggtaaata gcaatgcccc gtttgctaga      1320
     aagttcagaa gagaagatcc tgtccttgac aagatcgatg atgagctcct taacagaggt      1380
     cctgggatga taacacctgg cggttggtgc attggaagcc atgagaatgg gagtgaccct      1440
     tgtgctgtta ttggtgatac tgatgttatc aggcctggtc caggcgctag acggctcgag      1500
     aatctggtaa cttcgttatt atccactgag aatttccgat caaaacagtg taagtgatct      1560
     gatatatcta gagaacgaca tcacatagag atggaatgta gcagccttga ttattggggt      1620
     tagatgtgat ttaggatctg atagaaatcc ctcttttagt caagaatata agtgaagaaa      1680
     tacagaacaa ttaggctata tgatgtggga agtatttgtc ttgttgctcc acacaacatg      1740
     ccttaaggtc ttgttgtagt tctcagattg gaattttgag attttgtact ctgctgtttt      1800
     aaagttagtt tcttcctttc aaaaaaaaaa                                       1830
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