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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AK226490; SV 1; linear; mRNA; STD; PLN; 1587 BP.
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AC   AK226490;
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DT   27-JUL-2006 (Rel. 88, Created)
DT   27-JUL-2006 (Rel. 88, Last updated, Version 1)
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DE   Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone:
DE   RAFL06-79-F01.
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KW   CAP trapper; FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1587
RA   Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T.,
RA   Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K.,
RA   Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K.,
RA   Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
RA   Hayashizaki Y., Shinozaki K.;
RT   ;
RL   Submitted (26-JUL-2006) to the EMBL/GenBank/DDBJ databases.
RL   Motoaki Seki, RIKEN Plant Science Center; 1-7-22 Suehiro-cho, Tsurumi-ku,
RL   Yokohama, Kanagawa 230-0045, Japan (E-mail:mseki@psc.riken.jp,
RL   URL:http://rarge.gsc.riken.jp/, Tel:81-45-503-9625, Fax:81-45-503-9586)
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RN   [2]
RA   Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Morosawa T.,
RA   Kamiya A., Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K.,
RA   Kohara Y., Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K.,
RA   Akiyama K., Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
RA   Hayashizaki Y., Shinozaki K.;
RT   "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs";
RL   Unpublished.
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CC   An Arabidopsis full-length cDNA library was constructed essentially
CC   as reported previously (Seki et al. (1998) Plant J. 15:707-720;
CC   Seki et al. (2002) Science 296:141-145).
CC   This clone is in a modified pBluescript vector.
CC   Please visit our web site (http://rarge.gsc.riken.jp/) for further
CC   details.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1587
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="4"
FT                   /ecotype="Columbia"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL06-79-F01"
FT                   /note="common name: thale cress"
FT                   /db_xref="taxon:3702"
FT   CDS             15..1322
FT                   /codon_start=1
FT                   /gene="At4g22580"
FT                   /product="hypothetical protein"
FT                   /db_xref="GOA:Q9SUW1"
FT                   /db_xref="InterPro:IPR004263"
FT                   /db_xref="UniProtKB/TrEMBL:Q9SUW1"
FT                   /protein_id="BAE98632.1"
FT                   /translation="MASKSTVTTLTIFFFFFFFFIEPKVQSQQISAVDSECTNRWIHIR
FT                   TLPSRFNLDLLSTCNRYPITDDLCPYLANHGLGPKTHTRTRSWYRTDPLLLELIFHRRI
FT                   LEYPCLTPDPNLASAIYLPYYAGIDSLRYLYGPDLNSSADHGSDLLEFLTRDQPEIWSR
FT                   RSGHDHFLVMARPAWDFSQPLTVDPPIWGTSFLERREFFNLTALTLESRYWPWQEQAVP
FT                   YPTSFHPHSLPFLESWIRRVRRSRRTSLMLFAGGGGTSSSPNIRRSIRLECTSINATQS
FT                   DNKICDFVDCSNGICEHDPIRFMRPMLQSSFCLQPPGDTPTRKATFDGIIAGCIPVFFE
FT                   DQTAKMQYKWHLPESEFAEFSVTIPKEDVVFRGVRIQDVLMSIPKEEVTRMRERVIEMM
FT                   PRVMYRRHGASMGLMNKKDAVDIAIDGVLDRIISRV"
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SQ   Sequence 1587 BP; 411 A; 362 C; 322 G; 492 T; 0 other;
     gaacatccat aacaatggct tccaaatcca ccgtcacaac attgaccatc ttcttcttct        60
     tcttcttctt cttcatcgag cctaaggttc agtctcagca aatctcagcc gttgattcag       120
     aatgcaccaa ccgttggatt cacatccgaa cactcccatc acgattcaat ctcgatcttc       180
     tctcaacttg taatcgttac ccaatcaccg acgatctttg cccttactta gccaatcacg       240
     gactcggccc aaaaacccat acccgtaccc gaagctggta tcgaaccgac ccgttacttc       300
     tcgaactcat tttccaccgt cggattctcg aatatccatg tctcacaccc gacccgaatc       360
     tcgcctccgc aatctacctc ccttactacg ccggcatcga ttctctccgt tatctctacg       420
     gacccgattt aaactcaagc gctgatcacg ggtcggatct tctcgagttt ttgacccgtg       480
     atcaacccga gatctggtct cgtcgctccg gtcatgatca tttcctcgtt atggctcgac       540
     ccgcttggga tttctctcag ccgttgaccg ttgaccctcc gatttgggga acgtcgtttc       600
     tagaacgccg tgagtttttc aatctaacgg cgttaactct cgaatctcgt tactggccgt       660
     ggcaagaaca agccgttcct tatccgacgt cgtttcatcc acacagcttg ccgtttttgg       720
     aatcgtggat ccgtcgtgtc cgtcgctcac ggcgaacttc tcttatgcta ttcgccggcg       780
     gtggtggtac ctcctcttct cctaacatcc gtcgtagtat ccgcttagag tgcactagca       840
     taaacgcaac acaatcggat aataaaatct gcgatttcgt cgattgttct aacggaatct       900
     gtgagcatga tccgattaga ttcatgagac cgatgttaca atcatcgttt tgtttacaac       960
     caccgggaga tacaccaaca aggaaagcta cattcgacgg aatcatcgcc ggatgtatac      1020
     cggtgttttt cgaggatcaa acggcgaaaa tgcagtacaa atggcattta ccggagtccg      1080
     aattcgcgga gttttcggtt acgattccga aggaagatgt agtgtttaga ggagttagaa      1140
     tacaagatgt gttgatgagt atacctaaag aagaagttac tagaatgaga gaaagagtta      1200
     tagagatgat gcctagagtt atgtatagaa gacatggagc ttcaatggga ttgatgaata      1260
     agaaagatgc tgttgatatt gctattgatg gagttttgga caggattata tctagagttt      1320
     gattcttact aacaacagtt ttaaacaggt atgtattatg ttgttgtttg tttaaattgt      1380
     tatacttcaa aattcatttt tgattgttca tgtttgccaa atctcattga gattttttgg      1440
     ttagtaatat actactatag tggttacatt aataatgaat gttaaggttt aggtgagatt      1500
     tgtgtaatga tatggttatt tgtatcattg taagtcatgg taatgattag tgattattgt      1560
     aatgtttttg cttgtctaca aaaaaaa                                          1587
//
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