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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AK176886; SV 1; linear; mRNA; STD; PLN; 1557 BP.
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AC   AK176886;
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DT   09-SEP-2004 (Rel. 81, Created)
DT   09-SEP-2004 (Rel. 81, Last updated, Version 1)
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DE   Arabidopsis thaliana mRNA, complete cds, clone: RAFL25-44-O21.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-1557
RA   Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA   Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA   Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA   Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA   Shinozaki K.;
RT   ;
RL   Submitted (06-SEP-2004) to the EMBL/GenBank/DDBJ databases.
RL   Motoaki Seki, RIKEN Genomic Sciences Center; 1-7-22 Suehiro-cho,
RL   Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan (E-mail:mseki@gsc.riken.jp,
RL   URL:http://rarge.gsc.riken.jp/, Tel:81-45-503-9625, Fax:81-45-503-9586)
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RN   [2]
RA   Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA   Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA   Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA   Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA   Shinozaki K.;
RT   "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs";
RL   Unpublished.
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CC   An Arabidopsis full-length cDNA library was constructed essentially
CC   as reported previously (Seki et al. (1998) Plant J. 15:707-720;
CC   Seki et al. (2002) Science 296:141-145). cDNA cleaved with BamHI
CC   and XhoI was ligated to modified Lambda FLC-1-E vector (Carninci et
CC   al. (2001) Genomics 77:79-90) digested with BamHI and SalI.
CC   This clone is in a modified pBluescript vector.
CC   Please visit our web site (http://rarge.gsc.riken.jp/) for further
CC   details.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1557
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="3"
FT                   /ecotype="Columbia"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL25-44-O21"
FT                   /note="common name: thale cress"
FT                   /db_xref="taxon:3702"
FT   CDS             53..1306
FT                   /codon_start=1
FT                   /gene="At3g24040"
FT                   /product="unknown protein"
FT                   /db_xref="GOA:Q9LIQ3"
FT                   /db_xref="InterPro:IPR003406"
FT                   /db_xref="UniProtKB/TrEMBL:Q9LIQ3"
FT                   /protein_id="BAD44649.1"
FT                   /translation="MQHTPEQPRVTLYIILTTAFLSLCFLLSLSSSSQYSSSSYTGRPD
FT                   DLRPDPRLFPSSSKIAADTAPPSIAYLISGSSGDTRRILRLLYATYHPRNRYLLHLDSL
FT                   ATQSERDRLAVDVQDVPIFRAARNVDVIGKPDFAYQRGSSPMASTLHGASILLRLSGTW
FT                   DWFVSISVDDYPLVTQDELLHIMSHLPKDLNFVNHTSYIGWKESRKLKPVIVDPGLYLV
FT                   EKTDMFFASQKRELPKAFKLFSGPSFSILSRNFMEHCVLGTDNFPRTLLMYLSNTPDSL
FT                   SNYFPTILCNTDTFKKTIMNNNLLYLASNDTSKERYHQLDHKEFTEMVDSGAAFARGFR
FT                   YDDTVLDRIDHELLGRKPGEVVPGGWCLGDSSKNRSSCSVWGDSGILRPGSGSDRLERR
FT                   IVELLSNDWFRLHQCVPE"
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SQ   Sequence 1557 BP; 394 A; 383 C; 312 G; 468 T; 0 other;
     acagttagct ttcttctcta gccgtcgaag tttcacgcgc cgccgtgaga aaatgcagca        60
     cacaccggag caaccgagag tcactcttta cataatcctc accaccgcgt ttctctctct       120
     atgtttcctc ctctctctct cttcctcttc ccagtactct tcatcttcct acaccggacg       180
     acccgatgat ctacgacccg acccgagact ctttccttct tcctccaaaa tcgccgccga       240
     tacagctcct ccttcaatcg cttacctaat ttccggatct tctggtgaca cgcgacgaat       300
     ccttcgactt ctctacgcta cttaccatcc tcgaaatcga tatcttcttc atctcgatag       360
     cttagcgaca caatctgaac gagatcggct cgctgttgat gtacaagatg taccgatttt       420
     tagagctgca aggaatgttg atgttattgg gaagcctgat ttcgcgtatc agagaggatc       480
     gtctccgatg gcttctacgc ttcatggtgc ttcgattctt cttagattgt caggaacttg       540
     ggattggttt gttagtatta gtgttgatga ttatcctctc gttactcaag atgagcttct       600
     tcatattatg tcacatttgc ctaaggactt gaattttgtg aaccacacta gctacattgg       660
     ttggaaagag tccaggaagt tgaagccagt tattgttgat ccagggctct atcttgtgga       720
     gaaaaccgat atgtttttcg cttcgcagaa acgagagttg cctaaggctt tcaagttatt       780
     ctcaggtcca tctttctcca tcttaagccg gaatttcatg gagcactgtg tcttaggcac       840
     tgacaacttc cctcggactc tactcatgta cttgtccaac acacctgatt ctctttccaa       900
     ctacttccca actatcctct gcaacacgga taccttcaaa aagaccatca tgaacaacaa       960
     cttactctac ctagcttcta acgacacttc taaagaaaga taccatcagc ttgatcacaa      1020
     agagttcaca gaaatggttg actccggagc agcttttgca agaggattca ggtacgacga      1080
     cactgtcctt gatcgcatcg atcatgaact tctgggacgc aaacctggtg aagttgtgcc      1140
     tggtggttgg tgtttaggag attctagtaa aaaccgtagc tcgtgttccg tctggggtga      1200
     ctcgggtatc cttcggcccg gttctggttc cgataggctc gagagacgaa ttgttgagtt      1260
     actatcaaac gattggttca gattgcacca atgcgtacct gaatgatcgg atgatcctca      1320
     ccgcactttc aatagagtaa atagttgtcc aagacacgaa gaagataacg gtactttatg      1380
     cttctgtatc tttagagaga gttccacttc tacattgtaa cctgtgactt tgagagtgtt      1440
     tgttccattg ttgttgtaga aaaaccatct caaagctgag aaatgaaacg actcggttca      1500
     ttggttgaag tctaaaccgg tataaaatcc cggttttaat ctaatctaaa aaaaaaa         1557
//
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