EBI Dbfetch

ID   AK176488; SV 1; linear; mRNA; STD; PLN; 2082 BP.
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AC   AK176488;
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DT   09-SEP-2004 (Rel. 81, Created)
DT   09-SEP-2004 (Rel. 81, Last updated, Version 1)
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DE   Arabidopsis thaliana mRNA for class IV chitinase (CHIV), complete cds,
DE   clone: RAFL24-30-I06.
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KW   FLI_CDNA.
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OS   Arabidopsis thaliana (thale cress)
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids;
OC   eurosids II; Brassicales; Brassicaceae; Arabidopsis.
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RN   [1]
RP   1-2082
RA   Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA   Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA   Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA   Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA   Shinozaki K.;
RT   ;
RL   Submitted (06-SEP-2004) to the EMBL/GenBank/DDBJ databases.
RL   Motoaki Seki, RIKEN Genomic Sciences Center; 1-7-22 Suehiro-cho,
RL   Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan (E-mail:mseki@gsc.riken.jp,
RL   URL:http://rarge.gsc.riken.jp/, Tel:81-45-503-9625, Fax:81-45-503-9586)
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RN   [2]
RA   Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
RA   Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
RA   Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
RA   Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J., Hayashizaki Y.,
RA   Shinozaki K.;
RT   "Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs";
RL   Unpublished.
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CC   An Arabidopsis full-length cDNA library was constructed essentially
CC   as reported previously (Seki et al. (1998) Plant J. 15:707-720;
CC   Seki et al. (2002) Science 296:141-145). cDNA cleaved with BamHI
CC   and XhoI was ligated to modified Lambda FLC-1-E vector (Carninci et
CC   al. (2001) Genomics 77:79-90) digested with BamHI and SalI.
CC   This clone is in a modified pBluescript vector.
CC   Please visit our web site (http://rarge.gsc.riken.jp/) for further
CC   details.
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FH   Key             Location/Qualifiers
FH
FT   source          1..2082
FT                   /organism="Arabidopsis thaliana"
FT                   /chromosome="3"
FT                   /ecotype="Columbia"
FT                   /mol_type="mRNA"
FT                   /clone="RAFL24-30-I06"
FT                   /note="common name: thale cress"
FT                   /db_xref="taxon:3702"
FT   CDS             44..865
FT                   /codon_start=1
FT                   /gene="At3g54420"
FT                   /product="class IV chitinase (CHIV)"
FT                   /db_xref="GOA:Q9M2U5"
FT                   /db_xref="HSSP:1MMC"
FT                   /db_xref="InterPro:IPR018371"
FT                   /db_xref="UniProtKB/TrEMBL:Q9M2U5"
FT                   /protein_id="BAD44251.1"
FT                   /translation="MLTPTISKSISLVTILLVLQAFSNTTKAQNCGCSSELCCSQFGFC
FT                   GNTSDYCGVGCQQGPCFAPPPANGVSVAEIVTQEFFNGIISQAASSCAGNRFYSRGAFL
FT                   EALDSYSRFGRVGSTDDSRREIAAFFAHVTHETGHFCYIEEIDGASKDYCDENATQYPC
FT                   NPNKGYYGRGPIQLSWNFNYGPAGTAIGFDGLNAPETVATDPVISFKTALWYWTNRVQP
FT                   VISQGFGATIRAINGALECDGANTATVQARVRYYTDYCRQLGVDPGNNLTC"
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SQ   Sequence 2082 BP; 598 A; 428 C; 466 G; 590 T; 0 other;
     aagactagtt cttgttttct ccatattcct caacaacatc aaaatgttga ctcccaccat        60
     ttctaaatcc atctctttag taaccattct attagttcta caagctttct ctaacacaac       120
     aaaggctcaa aattgcggtt gttcgtcaga gctatgttgt agtcagtttg gcttttgcgg       180
     taacacttca gactattgtg gtgtaggttg ccaacaagga ccttgttttg ctcctccccc       240
     tgcaaatggt gtctctgtgg ctgagattgt aacgcaagaa ttcttcaatg gaatcatcag       300
     tcaagccgcg tctagttgcg ccggcaatag attttacagt cggggagctt ttcttgaggc       360
     cttagactca tattctcgtt tcggtagagt tggatcgacc gacgactcta ggcgtgagat       420
     tgcagcgttc tttgctcatg tcacacatga aacaggacat ttctgctaca tagaagagat       480
     agacggagcc tcaaaggatt actgcgacga gaatgcaaca caatatccat gcaatcctaa       540
     caaaggctac tacggccgcg gaccgatcca actctcttgg aatttcaact acgggccagc       600
     cgggacagca attggtttcg acggcctgaa tgcaccggaa acagtagcca cggatccagt       660
     catatccttc aaaaccgcct tgtggtactg gaccaatagg gttcagcctg ttatctctca       720
     aggttttggt gcaacaatcc gtgccattaa cggtgctttg gagtgtgacg gggccaacac       780
     agccaccgtt caagctagag ttcgttacta cacggattat tgtcgtcaac ttggcgttga       840
     tcctggaaac aacctcactt gctaacaaaa acatctattt ctctgtatac atatataaaa       900
     gtaaaaatag acaagcttta agaatggaat ggcccattaa tgttttgtcc cttaatgtcg       960
     aatatatata aaatccactt agttaaaaaa agacaaaaac tttgagatga aaacagagaa      1020
     actttataca cagaatccta tgaagtagtt tccatcattt ttgagaaaga catggaaaag      1080
     ctttgttatg atcaacacca tagtaatgaa gaaagccttt gaagatatga ccacttatag      1140
     ttactgttgc ttgataacca atctctgctt gctcgttgtt gcttatcgct gttactctcg      1200
     tccgtttaaa aaccgccgga gcttcaattt tccccggtaa cccctctctg aagcctctct      1260
     ctgcaatttt ccacacaaaa acgcaaaatt cagattaaaa aaggttttgt tcaactctag      1320
     ttccaagatt cattaccttg acgagaagtg gttgtcggaa gtagcgagac attaggggaa      1380
     ctctgtttat cgattttgag cttcttcttc ctctcagaag gagaagatga agaacgagtt      1440
     gcagaagaag gaatccacgt gctcttcacg tgagtgacac agttgtatcc tctgctttta      1500
     caacaagttc tacatctttc gaacaaacac tctttctttg ctctgtttcc acagtctctg      1560
     catactttct ctccaactgt gttgttgtct tccaccgccg cgaagtttac cggaggaaga      1620
     gatggccgtg ttatctgcgt cggtggtgga gataagagaa tgatgtttcg aagacctaac      1680
     atgtagtctg gagtagtact gattccaacg gcggcgacgg aggaggaaga gtgatcaggt      1740
     gggattgaga cggcggcgaa aggtgttgaa gatgatgatg gttgtggtgg ccatgagagg      1800
     gaagaaggtg gatttgccac tgtggcagta gtaataataa aagcgcgtgg aggctaatct      1860
     agtaggtgga gcttagctat ggaggagtct agtaagagta gtgagaaaca gagagagaga      1920
     gcaataaaca taagtttttt aatatttggg gttttgacag agttttgtgg tcacatgtaa      1980
     tggttaaaac gttctgcaga aaatgaaata attatctttc caagtggagt ggtccacttc      2040
     attgggaaag cacccgtcta aaacggcttt acaaaaaaaa aa                         2082
//