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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AK168432; SV 1; linear; mRNA; HTC; MUS; 1421 BP.
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AC   AK168432;
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DT   09-SEP-2005 (Rel. 85, Created)
DT   24-SEP-2008 (Rel. 97, Last updated, Version 9)
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DE   Mus musculus 17 days pregnant adult female amnion cDNA, RIKEN full-length
DE   enriched library, clone:I920016L03 product:Similar to CGI-14 protein
DE   (Weakly similar to putative N-acetylglucosamine-6-phosphate deacetylase),
DE   full insert sequence.
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KW   CAP trapper; HTC; HTC_FLI.
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OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus.
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RN   [1]
RP   1-1421
RA   Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA   Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA   Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA   Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA   Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT   ;
RL   Submitted (14-APR-2004) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL   
RL   :http://www.osc.riken.jp/
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RN   [2]
RX   DOI; 10.1126/science.1112014
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The transcriptional landscape of the mammalian genome.";
RL   Science 309(5740):1559-1563(2005).
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RN   [3]
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science 309:1564-1566(2005).
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RN   [4]
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420:563-573(2002).
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RN   [5]
RX   DOI; 10.1038/35055500
RX   PUBMED; 11217851.
RA   RIKEN FANTOM Consortium;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
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RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
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RN   [7]
RX   DOI; 10.1101/gr.145100
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
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RN   [8]
RX   DOI; 10.1101/gr.152600
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
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DR   ASTD; TRAN00000124524.
DR   Ensembl-Gn; ENSMUSG00000036820; Mus_musculus.
DR   Ensembl-Tr; ENSMUST00000040735; Mus_musculus.
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CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
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FH   Key             Location/Qualifiers
FH
FT   source          1..1421
FT                   /organism="Mus musculus"
FT                   /strain="C57BL/6J"
FT                   /mol_type="mRNA"
FT                   /sex="female"
FT                   /dev_stage="17 days pregnant adult"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="I920016L03"
FT                   /tissue_type="amnion"
FT                   /db_xref="taxon:10090"
FT   CDS             28..1257
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="Similar to CGI-14 protein (Weakly similar to
FT                   putative N-acetylglucosamine-6-phosphate deacetylase)
FT                   (UniProt|Q8JZV7, evidence: FASTY, 100%ID, 100%length,
FT                   match=1227)"
FT                   /note="putative"
FT                   /db_xref="GOA:Q8JZV7"
FT                   /db_xref="HSSP:1UN7"
FT                   /db_xref="InterPro:IPR003764"
FT                   /db_xref="MGI:2443978"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q8JZV7"
FT                   /protein_id="BAE40339.1"
FT                   /translation="MRSGQCAAGAPVLQFTNCRILRGGTLLREDLWVRGGRILDPEKLF
FT                   FEERRVADEQRDCGGRILAPGFIDVQINGGFGVDFSKATEDVGSGVALVARRLLSHGVT
FT                   SFCPTLVTSPPEVYHKVLPQIPVKSGGPHGAGVLGVHLEGPFISREKRGAHPEAYLRSF
FT                   EANAFHDVLATYGPLDNVCIVTLAPELDRSHEVIQALTAQGIRVSLGHSVADLRAAEVA
FT                   VQSGATFITHLFNAMLPFHHRDPGIVGLLTSDQLPPGHCIFYGMIADGIHTNPAALRIA
FT                   HRAHPQGLVLVTDAVPALGLGNGRHTLGQQEVEVDGLIAYIAGTKTLGGSIAPMDVCVR
FT                   HFLQATGCSVESALEAASLHPAQMLGLEKTKGSLDFGADADFVVLDDTLHVQATYISGE
FT                   LVWQAEEAGP"
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SQ   Sequence 1421 BP; 265 A; 409 C; 453 G; 294 T; 0 other;
     ggcttgctgg gttcggcgcg actcacgatg cgtagcgggc agtgcgcagc gggggccccg        60
     gtgctccagt tcaccaactg ccgcatcctg cgtggcggca cgctcctcag ggaggatctg       120
     tgggtgcgcg ggggccgaat cctggaccca gaaaagctgt tttttgagga gaggcgtgtg       180
     gctgatgagc agcgggactg cggaggccgc atcctggcgc ctggctttat cgatgtgcag       240
     atcaacggtg gatttggtgt tgacttctcc aaggctacgg aggacgtggg ttcgggggtc       300
     gccctagtgg cccggaggct cctgtcccac ggtgtcacct ccttctgtcc caccctggtc       360
     acctccccac cagaggttta tcacaaggtc cttcctcaga tccctgtgaa gagtggaggt       420
     ccccatgggg caggggtcct cggggtgcac ttggagggcc cattcatcag ccgggaaaag       480
     cggggtgcac accccgaggc ctacctccgc tcctttgaag ccaatgcttt tcatgatgtg       540
     ttggccacat atgggcccct ggacaacgtc tgcattgtga cacttgcccc tgaactagac       600
     cggagccatg aagtgatcca ggcactgaca gcccaaggca tccgtgtgtc tctagggcac       660
     tcagtggccg acctgcgggc tgcagaagtg gcagtgcaga gtggggccac cttcatcact       720
     cacctcttca atgccatgtt gcctttccac caccgtgacc caggcatagt agggcttctg       780
     accagtgacc agctgccccc aggccactgc atcttctatg ggatgattgc tgatggcata       840
     cacaccaacc ctgcagctct gcgcattgct caccgggccc atccccaggg gctggtgctg       900
     gtcactgatg ctgtccctgc cctgggcttg ggcaatggcc gccatacact gggacagcag       960
     gaggtggagg tagatgggct aatagcgtac attgcaggca ccaagacact gggtggcagc      1020
     atagccccca tggatgtgtg cgtccggcat ttcctgcagg ctacaggctg tagtgtggag      1080
     tcggccctgg aagctgcctc cctccaccct gcccagatgc tggggctgga gaagaccaag      1140
     gggagcctgg actttggtgc tgatgcagac tttgtggtgc tcgacgacac tctccatgtc      1200
     caggccactt acatctctgg tgaattggtg tggcaggcag aggaagctgg gccgtgactg      1260
     agggtcttgg ctggaaagga cacttggaga ggccaggcag tccacggagc tggtctccag      1320
     ggagcaagct gagagccctg ccctatgtct aaaacagaac ctcagtcatc actcctggag      1380
     gggaggcagt ggcttggata aatacagaca gtgggacttg c                          1421
//
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