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EBIDatabasesDatabase BrowsingDbfetch

EBI Dbfetch

ID   AK168048; SV 1; linear; mRNA; HTC; MUS; 1137 BP.
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AC   AK168048;
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DT   09-SEP-2005 (Rel. 85, Created)
DT   24-SEP-2008 (Rel. 97, Last updated, Version 9)
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DE   Mus musculus TIB-55 BB88 cDNA, RIKEN full-length enriched library,
DE   clone:I730049J03 product:phosphoserine phosphatase, full insert sequence.
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KW   CAP trapper; HTC; HTC_FLI.
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OS   Mus musculus (house mouse)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea;
OC   Muridae; Murinae; Mus.
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RN   [1]
RP   1-1137
RA   Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F.,
RA   Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M.,
RA   Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K.,
RA   Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T.,
RA   Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.;
RT   ;
RL   Submitted (14-APR-2004) to the EMBL/GenBank/DDBJ databases.
RL   Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical
RL   Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22
RL   Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL   
RL   :http://www.osc.riken.jp/
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RN   [2]
RX   DOI; 10.1126/science.1112014
RX   PUBMED; 16141072.
RG   The FANTOM Consortium, Riken Genome Exploration Research Group and Genome
RG   Science Group (Genome Network Project Core Group)
RA   ;
RT   "The transcriptional landscape of the mammalian genome.";
RL   Science 309(5740):1559-1563(2005).
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RN   [3]
RG   RIKEN Genome Exploration Research Group and Genome Science Group (Genome
RG   Network Project Core Group) and the FANTOM Consortium
RA   ;
RT   "Antisense Transcription in the Mammalian Transcriptome";
RL   Science 309:1564-1566(2005).
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RN   [4]
RG   The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase
RG   I and II Team
RA   ;
RT   "Analysis of the mouse transcriptome based on functional annotation of
RT   60,770 full-length cDNAs";
RL   Nature 420:563-573(2002).
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RN   [5]
RX   DOI; 10.1038/35055500
RX   PUBMED; 11217851.
RA   RIKEN FANTOM Consortium;
RT   "Functional annotation of a full-length mouse cDNA collection";
RL   Nature 409(6821):685-690(2001).
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RN   [6]
RX   DOI; 10.1016/S0076-6879(99)03004-9
RX   PUBMED; 10349636.
RA   Carninci P., Hayashizaki Y.;
RT   "High-efficiency full-length cDNA cloning";
RL   Meth. Enzymol. 303:19-44(1999).
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RN   [7]
RX   DOI; 10.1101/gr.145100
RX   PUBMED; 11042159.
RA   Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M.,
RA   Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.;
RT   "Normalization and subtraction of cap-trapper-selected cDNAs to prepare
RT   full-length cDNA libraries for rapid discovery of new genes";
RL   Genome Res. 10(10):1617-1630(2000).
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RN   [8]
RX   DOI; 10.1101/gr.152600
RX   PUBMED; 11076861.
RA   Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P.,
RA   Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N.,
RA   Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R.,
RA   Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S.,
RA   Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y.,
RA   Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y.,
RA   Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.;
RT   "RIKEN integrated sequence analysis (RISA) system--384-format sequencing
RT   pipeline with 384 multicapillary sequencer";
RL   Genome Res. 10(11):1757-1771(2000).
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DR   ASTD; TRAN00000132914.
DR   Ensembl-Gn; ENSMUSG00000029446; Mus_musculus.
DR   Ensembl-Tr; ENSMUST00000118268; Mus_musculus.
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CC   cDNA library was prepared and sequenced in Mouse Genome
CC   Encyclopedia Project of Genome Exploration Research Group in Riken
CC   Genomic Sciences Center and Genome Science Laboratory in RIKEN.
CC   Division of Experimental Animal Research in Riken contributed to
CC   prepare mouse tissues.
CC   Please visit our web site for further details.
CC   URL:http://www.osc.riken.jp/
CC   URL:http://fantom.gsc.riken.jp/
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FH   Key             Location/Qualifiers
FH
FT   source          1..1137
FT                   /organism="Mus musculus"
FT                   /strain="BALB/C"
FT                   /mol_type="mRNA"
FT                   /clone_lib="RIKEN full-length enriched mouse cDNA library"
FT                   /clone="I730049J03"
FT                   /cell_line="TIB-55 BB88"
FT                   /db_xref="taxon:10090"
FT   CDS             235..912
FT                   /codon_start=1
FT                   /transl_table=1
FT                   /note="phosphoserine phosphatase (MGD|MGI:97788
FT                   GB|NM_133900, evidence: BLASTN, 99%, match=1135)"
FT                   /note="putative"
FT                   /db_xref="GOA:Q99LS3"
FT                   /db_xref="HSSP:1L8L"
FT                   /db_xref="InterPro:IPR004469"
FT                   /db_xref="MGI:97788"
FT                   /db_xref="UniProtKB/Swiss-Prot:Q99LS3"
FT                   /protein_id="BAE40030.1"
FT                   /translation="MVSHSELRKLFCSADAVCFDVDSTVIREEGIDELAKFCGVEAAVS
FT                   EMTRRAMGGALPFKDALTQRLALIQPSRDQVQRLLAEHPPHLTPGIRELVSRLQERNVQ
FT                   VFLISGGFRSIVEHVAAKLNIPTTNVFANRLKFYFNGEYAGFDEMQPTAESGGKGKVIR
FT                   FLKEKFHFKKIIMIGDGATDMEACPPADAFIGFGGNVIRQQVKDNAKWYITDFVELLGE
FT                   LEE"
FT   polyA_signal    1119..1124
FT                   /note="putative"
FT   polyA_site      1137
FT                   /note="putative"
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SQ   Sequence 1137 BP; 292 A; 269 C; 296 G; 280 T; 0 other;
     gagctgctcc agttggaagc ccacatgcca aactgctctg gagttgccgg aggcatcagc        60
     agatcccagc cgagccttga gtgaggactg tgatctgcct tacgggtcac ctcactcagg       120
     actcagcgca cgcacgttgc agcagctcca gaccccattg ctaccggaaa gttacaggta       180
     ccggaaccga aaagaccagc gcggcccagg aaccgcggag gaaaacttcc caggatggtc       240
     tcccactcag agctgaggaa gctcttctgt tcagcggatg cagtgtgctt tgatgttgat       300
     agtaccgtca tcagagaaga aggaatcgat gagctggcca aattctgtgg tgtggaggcc       360
     gcagtgtctg aaatgacacg aagagccatg ggaggagcat tgccttttaa agacgcgctc       420
     actcagcgcc tggcactgat ccagccctcc agggatcaag tccagaggct cctagctgag       480
     cacccgccac atctgactcc tggcataagg gagctggtaa gccgcctcca ggagcgtaat       540
     gtccaggtgt tcctcatctc tggtggcttt cggagcattg tggagcacgt tgctgcaaag       600
     ctcaatatcc caacaaccaa tgtgtttgcc aataggctga agttctactt taatggtgag       660
     tacgcaggtt ttgatgagat gcagccgaca gccgagtcgg gtgggaaagg aaaggttatt       720
     cggtttttaa aggaaaaatt tcactttaag aaaataatca tgattggaga tggagctacg       780
     gacatggaag cctgtcctcc tgctgatgct ttcattggct ttggaggcaa tgtgatcagg       840
     cagcaggtta aggacaacgc caagtggtac atcactgact tcgtggagct gctgggagaa       900
     ctggaggagt gagcttgact tcccgctcac tcagaacaac tccaccttct caaagccaca       960
     cagttaggct cctgggagaa tctaggagac agctattttt ttctactgta gttctaatat      1020
     taatatgact actaattaca tggagaattt tatactctga attctttgtg tatattctta      1080
     caaacatttt acttgtagct ttctgaggtg cacagtaaat taaagacttt tactctt         1137
//
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