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EBI DbfetchID AK167892; SV 1; linear; mRNA; HTC; MUS; 2335 BP. XX AC AK167892; XX DT 09-SEP-2005 (Rel. 85, Created) DT 20-SEP-2008 (Rel. 97, Last updated, Version 8) XX DE Mus musculus CRL-1722 L5178Y-R cDNA, RIKEN full-length enriched library, DE clone:I730035J11 product:phosphatidylinositol glycan, class H, full insert DE sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-2335 RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K., RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (14-APR-2004) to the EMBL/GenBank/DDBJ databases. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX DOI; 10.1126/science.1112014 RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The transcriptional landscape of the mammalian genome."; RL Science 309(5740):1559-1563(2005). XX RN [3] RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science 309:1564-1566(2005). XX RN [4] RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420:563-573(2002). XX RN [5] RX DOI; 10.1038/35055500 RX PUBMED; 11217851. RA RIKEN FANTOM Consortium; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9 RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100 RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600 RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ XX FH Key Location/Qualifiers FH FT source 1..2335 FT /organism="Mus musculus" FT /strain="DBA/2" FT /mol_type="mRNA" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="I730035J11" FT /cell_line="CRL-1722 L5178Y-R" FT /db_xref="taxon:10090" FT CDS 34..600 FT /codon_start=1 FT /transl_table=1 FT /note="phosphatidylinositol glycan, class H (MGD|MGI:99463 FT GB|AK030744, evidence: BLASTN, 98%, match=1257)" FT /note="putative" FT /db_xref="GOA:Q5M9N4" FT /db_xref="InterPro:IPR019328" FT /db_xref="MGI:99463" FT /db_xref="UniProtKB/Swiss-Prot:Q5M9N4" FT /protein_id="BAE39904.1" FT /translation="MEDEKSFSDICGGRLALRCRYYSPYCREFGLSSARLSLCSLTAVT FT CAVWLAAYGLFTLCENSMVLSATIFITILGLLGYLHFVKIDQETLLIIDSLGIQMTSSY FT ASGKESTTFIEMDKVKDIIINEAIYMQKVIYYLCILLKEPGKPHEISRVVPVFQSAKPR FT LDCLIEVYRSCQEVLAHQKATATSL" FT polyA_signal 2311..2316 FT /note="putative" FT polyA_site 2335 FT /note="putative" XX SQ Sequence 2335 BP; 659 A; 512 C; 552 G; 612 T; 0 other; gtagagcggc gcgacattca ggtgtgtgcg gccatggagg acgagaagag cttctccgat 60 atctgcggcg gccgcctagc cctgcggtgc cgctactact caccgtactg ccgcgagttc 120 ggcctcagct cggctcggct gtcgctgtgc tcgctcaccg cggtcacctg cgcggtgtgg 180 ctggcggcct acgggctctt caccctgtgc gagaatagca tggtcctctc tgccaccatc 240 ttcatcacca tcttaggcct gcttggttac ctccattttg tgaagattga ccaggagact 300 ctactaatca tcgactcact tggcatccag atgacttcat cttatgcatc gggcaaagaa 360 agtaccacct tcatagagat ggacaaggtc aaggacatta tcattaacga ggctatctac 420 atgcagaagg tcatttacta cctctgcatt ttactgaagg agccggggaa gccacacgag 480 atctctcgag tagttcctgt cttccagagt gccaagcccc ggttggactg cttgattgaa 540 gtatacagaa gctgccagga ggttctggca caccagaaag ccacagcaac aagcttatga 600 ggctcagcat taaaaggcca gtattgtctt tatggagagg actcctagac tgtagtggcc 660 ggtttatttt ccatactgta aaaaccatca ggacacagtc ctgggaatca gaatggatga 720 gtagatctca gaaccacaga ggaggggctg gaacttgatt catgttcata atgttccctg 780 tataatacag ttttttctat actacgaatc aagggtagac cttaaggatt ttgacatgtc 840 aaaaggcggc caggcatagt ggcacatgcc tttagtccca gcactcaaga ggcagaagca 900 ggtgatctct tgagtttaag gccattctga gctacatagt aagtatcctc cacccaaaag 960 tattgtccaa aaagaacact gaaaacttta agtaccttca tgtttgtgtt aaaatctgtg 1020 aagtattaag actggtacca gatttcacaa gaaaaatgta atttccatct gtatagactc 1080 ttgtctaaaa gttagggaaa ataagtcaca tttttatgta tgagttagca ggaataaaat 1140 gcctaaaggg ctagcctcta tccacccagc tcctaagatc tgtgcaggat catgactcct 1200 tcatccacaa tttagctagg gatggtgtgg atgcttgtaa tcccagctct cagaagctgt 1260 caacaggagg attgaaagtt tgaggccagc ctgggcttcg tgatgagaca ctgtctcaaa 1320 ccccaagata aatatccaca acacacagtt attgtctggt tcactgacag ttttattgac 1380 aaacatacat agcatttcag ccatgggtgt caagcatgag agtacctttc tgttaatatt 1440 ttctattgct caaaagctgt ttggctaaga gggcttaggt gaagagtgag agattaaatg 1500 ttggttccca gacatgagcc tgtcacatta aaggatgagg aagccagttg acagaagcct 1560 ttgtttcaga ggtggttcct tagatgctaa agatcaggaa ggagaaaagg cgctagactg 1620 ggcagaactc gcctttaacc ccagcactgg aaaaggcaga ggcaggggga tttctgagtt 1680 tggagggcaa gctggttcta attagtgggt tccaagaaca gccaggtctg catagtgaaa 1740 accctatctc aaaaagagag caagagaaag gaaaaaaaaa agcagcagca cagcagcagt 1800 agctaatcag accttcaagt cttacaaaca gttgcattag ctggaattct gtttacaaaa 1860 caaaaacaac ctgagagcag actacatcct tactggcttt aaggcccttg ggatgtaaac 1920 caagaactgc attctctgcc cttcacctag ccttgaagga gctgtccagg ggcctatagc 1980 aatgtgactt gaggtagacc tgtctcctct agaaccccaa atctggggtg ggagttgggg 2040 ttcaaacaga aatggctata aagctgcctg gcttgcaagt caagctcttt ttaaggggca 2100 gactcttgtg cctttttaaa gtcaggcttg tcagttcaaa ggatgaggga ttacagcagc 2160 tgaggcattc agattaaact aatttttggc cttgcagttt cttgtggtgt acaacacaca 2220 cattgttggg ttaaaggctt atttcttgat attcctctta tcccctagtc tatgttactg 2280 aaaaataata aaactgcctt aaagctacac aataaagctt attttttata tgttg 2335 // |
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