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EBI DbfetchID AK159860; SV 1; linear; mRNA; HTC; MUS; 1458 BP. XX AC AK159860; XX DT 06-SEP-2005 (Rel. 85, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 10) XX DE Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, DE clone:I420035C05 product:Similar to CGI-14 protein (Weakly similar to DE putative N-acetylglucosamine-6-phosphate deacetylase), full insert DE sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-1458 RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K., RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (30-MAR-2004) to the EMBL/GenBank/DDBJ databases. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX DOI; 10.1126/science.1112014 RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The transcriptional landscape of the mammalian genome."; RL Science 309(5740):1559-1563(2005). XX RN [3] RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science 309:1564-1566(2005). XX RN [4] RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420:563-573(2002). XX RN [5] RX DOI; 10.1038/35055500 RX PUBMED; 11217851. RA RIKEN FANTOM Consortium; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9 RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100 RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600 RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR ASTD; TRAN00000124524. DR Ensembl-Gn; ENSMUSG00000036820; Mus_musculus. DR Ensembl-Tr; ENSMUST00000040735; Mus_musculus. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Tissues were provided by Takashi Ishikawa ( Department of Surgery CC 2 Yokohama City University 3-9 Fukuura,Kanazawa-ku,Yokohama CC 236-0004 Japan ) whose assistance we gratefully acknowledge. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ XX FH Key Location/Qualifiers FH FT source 1..1458 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="I420035C05" FT /cell_type="osteoclast-like cell" FT /db_xref="taxon:10090" FT CDS 67..1296 FT /codon_start=1 FT /transl_table=1 FT /note="Similar to CGI-14 protein (Weakly similar to FT putative N-acetylglucosamine-6-phosphate deacetylase) FT (UniProt|Q8JZV7, evidence: FASTY, 100%ID, 100%length, FT match=1227)" FT /note="putative" FT /db_xref="GOA:Q8JZV7" FT /db_xref="HSSP:1UN7" FT /db_xref="InterPro:IPR003764" FT /db_xref="MGI:2443978" FT /db_xref="UniProtKB/Swiss-Prot:Q8JZV7" FT /protein_id="BAE35434.1" FT /translation="MRSGQCAAGAPVLQFTNCRILRGGTLLREDLWVRGGRILDPEKLF FT FEERRVADEQRDCGGRILAPGFIDVQINGGFGVDFSKATEDVGSGVALVARRLLSHGVT FT SFCPTLVTSPPEVYHKVLPQIPVKSGGPHGAGVLGVHLEGPFISREKRGAHPEAYLRSF FT EANAFHDVLATYGPLDNVCIVTLAPELDRSHEVIQALTAQGIRVSLGHSVADLRAAEVA FT VQSGATFITHLFNAMLPFHHRDPGIVGLLTSDQLPPGHCIFYGMIADGIHTNPAALRIA FT HRAHPQGLVLVTDAVPALGLGNGRHTLGQQEVEVDGLIAYIAGTKTLGGSIAPMDVCVR FT HFLQATGCSVESALEAASLHPAQMLGLEKTKGSLDFGADADFVVLDDTLHVQATYISGE FT LVWQAEEAGP" XX SQ Sequence 1458 BP; 270 A; 423 C; 463 G; 302 T; 0 other; ggcttacggc tgctccgggc tctgccggct tgcgcccaaa gcttgctggg ttcggcgcga 60 ctcacgatgc gtagcgggca gtgcgcagcg ggggccccgg tgctccagtt caccaactgc 120 cgcatcctgc gtggcggcac gctcctcagg gaggatctgt gggtgcgcgg gggccgaatc 180 ctggacccag aaaagctgtt ttttgaggag aggcgtgtgg ctgatgagca gcgggactgc 240 ggaggccgca tcctggcgcc tggctttatc gatgtgcaga tcaacggtgg atttggtgtt 300 gacttctcca aggctacgga ggacgtgggt tcgggggtcg ccctagtggc ccggaggctc 360 ctgtcccacg gtgtcacctc cttctgtccc accctggtca cctccccacc agaggtttat 420 cacaaggtcc ttcctcagat ccctgtgaag agtggaggtc cccatggggc aggggtcctc 480 ggggtgcact tggagggccc attcatcagc cgggaaaagc ggggtgcaca ccccgaggcc 540 tacctccgct cctttgaagc caatgctttt catgatgtgt tggccacata tgggcccctg 600 gacaacgtct gcattgtgac acttgcccct gaactagacc ggagccatga agtgatccag 660 gcactgacag cccaaggcat ccgtgtgtct ctagggcact cagtggccga cctgcgggct 720 gcagaagtgg cagtgcagag tggggccacc ttcatcactc acctcttcaa tgccatgttg 780 cctttccacc accgtgaccc aggcatagta gggcttctga ccagtgacca gctgccccca 840 ggccactgca tcttctatgg gatgattgct gatggcatac acaccaaccc tgcagctctg 900 cgcattgctc accgggccca tccccaaggg ctggtgctgg tcactgatgc tgtccctgcc 960 ctgggcttgg gcaatggccg ccatacactg ggacagcagg aggtggaggt agatgggcta 1020 atagcgtaca ttgcaggcac caagacactg ggtggcagca tagcccccat ggatgtgtgc 1080 gtccggcatt tcctgcaggc tacaggctgt agtgtggagt cggccctgga agctgcctcc 1140 ctccaccctg cccagatgct ggggctggag aagaccaagg ggagcctgga ctttggtgct 1200 gatgcagact ttgtggtgct cgacgacact ctccatgtcc aggccactta catctctggt 1260 gaattggtgt ggcaggcaga ggaagctggg ccgtgactga gggtcttggc tggaaaggac 1320 acttggagag gccaggcagt ccacggagct ggtctccagg gagcaagctg agagccctgc 1380 cctatgtcta aaacagaacc tcagtcatca ctcctggagg ggaggcagtg gcttggataa 1440 atacagacag tgggactt 1458 // |
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