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EBI DbfetchID AK150473; SV 1; linear; mRNA; HTC; MUS; 1661 BP. XX AC AK150473; XX DT 06-SEP-2005 (Rel. 85, Created) DT 24-SEP-2008 (Rel. 97, Last updated, Version 10) XX DE Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched DE library, clone:I830008D03 product:GDP-mannose pyrophosphorylase A, full DE insert sequence. XX KW CAP trapper; HTC; HTC_FLI. XX OS Mus musculus (house mouse) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; OC Muridae; Murinae; Mus. XX RN [1] RP 1-1661 RA Arakawa T., Carninci P., Fukuda S., Hashizume W., Hayashida K., Hori F., RA Iida J., Imamura K., Imotani K., Itoh M., Kanagawa S., Kawai J., Kojima M., RA Konno H., Murata M., Nakamura M., Ninomiya N., Nishiyori H., Nomura K., RA Ohno M., Sakazume N., Sano H., Sasaki D., Shibata K., Shiraki T., RA Tagami M., Tagami Y., Waki K., Watahiki A., Muramatsu M., Hayashizaki Y.; RT ; RL Submitted (30-MAR-2004) to the EMBL/GenBank/DDBJ databases. RL Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical RL Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 RL Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL RL :http://www.osc.riken.jp/ XX RN [2] RX DOI; 10.1126/science.1112014 RX PUBMED; 16141072. RG The FANTOM Consortium, Riken Genome Exploration Research Group and Genome RG Science Group (Genome Network Project Core Group) RA ; RT "The transcriptional landscape of the mammalian genome."; RL Science 309(5740):1559-1563(2005). XX RN [3] RG RIKEN Genome Exploration Research Group and Genome Science Group (Genome RG Network Project Core Group) and the FANTOM Consortium RA ; RT "Antisense Transcription in the Mammalian Transcriptome"; RL Science 309:1564-1566(2005). XX RN [4] RG The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase RG I and II Team RA ; RT "Analysis of the mouse transcriptome based on functional annotation of RT 60,770 full-length cDNAs"; RL Nature 420:563-573(2002). XX RN [5] RX DOI; 10.1038/35055500 RX PUBMED; 11217851. RA RIKEN FANTOM Consortium; RT "Functional annotation of a full-length mouse cDNA collection"; RL Nature 409(6821):685-690(2001). XX RN [6] RX DOI; 10.1016/S0076-6879(99)03004-9 RX PUBMED; 10349636. RA Carninci P., Hayashizaki Y.; RT "High-efficiency full-length cDNA cloning"; RL Meth. Enzymol. 303:19-44(1999). XX RN [7] RX DOI; 10.1101/gr.145100 RX PUBMED; 11042159. RA Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., RA Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.; RT "Normalization and subtraction of cap-trapper-selected cDNAs to prepare RT full-length cDNA libraries for rapid discovery of new genes"; RL Genome Res. 10(10):1617-1630(2000). XX RN [8] RX DOI; 10.1101/gr.152600 RX PUBMED; 11076861. RA Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., RA Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., RA Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A., Yamamoto R., RA Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., RA Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., RA Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., RA Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.; RT "RIKEN integrated sequence analysis (RISA) system--384-format sequencing RT pipeline with 384 multicapillary sequencer"; RL Genome Res. 10(11):1757-1771(2000). XX DR ASTD; TRAN00000174919. DR Ensembl-Gn; ENSMUSG00000033021; Mus_musculus. DR Ensembl-Tr; ENSMUST00000037796; Mus_musculus. DR Ensembl-Tr; ENSMUST00000094822; Mus_musculus. DR Ensembl-Tr; ENSMUST00000113584; Mus_musculus. DR Ensembl-Tr; ENSMUST00000116580; Mus_musculus. XX CC cDNA library was prepared and sequenced in Mouse Genome CC Encyclopedia Project of Genome Exploration Research Group in Riken CC Genomic Sciences Center and Genome Science Laboratory in RIKEN. CC Division of Experimental Animal Research in Riken contributed to CC prepare mouse tissues. CC Tissues were provided by David A. Hume ( Depts. of Biochemistry CC and Microbiology/Parasitology Institute for Molecular Bioscience CC University of Queensland Brisbane,Q 4072 Australia ) whose CC assistance we gratefully acknowledge. CC Please visit our web site for further details. CC URL:http://www.osc.riken.jp/ CC URL:http://fantom.gsc.riken.jp/ XX FH Key Location/Qualifiers FH FT source 1..1661 FT /organism="Mus musculus" FT /strain="C57BL/6J" FT /mol_type="mRNA" FT /clone_lib="RIKEN full-length enriched mouse cDNA library" FT /clone="I830008D03" FT /cell_type="macrophage" FT /tissue_type="bone marrow" FT /db_xref="taxon:10090" FT CDS 227..1489 FT /codon_start=1 FT /transl_table=1 FT /note="GDP-mannose pyrophosphorylase A (MGD|MGI:1916330 FT GB|NM_133708, evidence: BLASTN, 99%, match=1456)" FT /note="putative" FT /db_xref="GOA:Q922H4" FT /db_xref="InterPro:IPR001451" FT /db_xref="InterPro:IPR005835" FT /db_xref="InterPro:IPR011004" FT /db_xref="InterPro:IPR018357" FT /db_xref="MGI:1916330" FT /db_xref="UniProtKB/Swiss-Prot:Q922H4" FT /protein_id="BAE29590.1" FT /translation="MLKAVILIGGPQKGTRFRPLSFVVPKPLFPVAGVPMIQHHIEACA FT QVPGMQEILLIGFYQPDEALTQFLEAAQQEFNLPVRYLQEFAPLGTGGGLYHFRDQILA FT GAPEAFFVLNADVCSDFPLSAMLEAHRRQRHPFLLLGTTANRTQSLNYGCIVENPQTHE FT VLHYVEKPSTFISDIINCGIYLFSPEALKPLRDVFQRNQQDGQLEESPGSWPGAGTIRL FT EQDVFSALAGQGQIYVHLTDGIWSQIKSAGSALYASRLYLGRYQITHPERLARHTPGGP FT RIRGNVYIHPTAKVAPSAVLGPNVSIGKGVTIGEGVRLRESIVLHGATLQEHTCVLHSI FT VGWGSTVGRWARVEGTPNDPNPNDPRARMDSESLFKDGKLLPAITILGCRVRIPAEVLI FT LNSIVLPHKELSRSFTNQIIL" FT polyA_signal 1641..1646 FT /note="putative" FT polyA_site 1661 FT /note="putative" XX SQ Sequence 1661 BP; 351 A; 496 C; 444 G; 370 T; 0 other; gagtggcagg cggcagagct ggcgtaaagg gagctagtgc tacgagaaac tgacgtctat 60 tggactgact cagttgtggg gtccaggtca gcaatcaatc tttggaatcc agagattccg 120 caccagtggt cggtatgcgc acggctggag tagtaggctc agcgtttgac atgtcaacgg 180 aacctgtctt ttgattcgag cacatgttta ggtaatagcg ctcatcatgc tcaaagctgt 240 gattctcatt ggaggccccc agaaggggac tcgcttcagg cctttgtctt ttgtggtgcc 300 caaacctctg tttcctgtgg caggcgttcc catgatccag caccatatag aagcctgtgc 360 ccaggtccca gggatgcagg agattcttct cattggcttc taccagcctg atgaggccct 420 cacccagttc ctggaagctg cccagcagga gtttaacctt ccagtcaggt acctgcagga 480 gtttgccccc ctcggcacag ggggtggcct ctaccatttt cgggaccaga tcctggctgg 540 ggcacctgag gccttcttcg tgctcaatgc tgacgtctgc tctgacttcc ccttgagcgc 600 catgttggag gctcacaggc gccagcgcca ccctttctta ctccttggca ccacggctaa 660 caggacacaa tccctcaact acggctgcat cgttgagaat ccacagactc atgaggttct 720 gcactatgtg gagaaaccca gcacctttat cagtgacatc atcaactgtg gcatctacct 780 tttctcccca gaagccctga agcctctccg ggatgttttc cagcgtaacc aacaggatgg 840 gcaactggag gagtccccag gctcgtggcc tggcgcaggg accatccgac tagaacagga 900 cgtgttctca gccctggctg ggcagggcca aatctacgtg cacctcaccg atggtatctg 960 gagccagatc aagtctgcag gctcagccct ttatgcctcc cgcctctatc tggggcgata 1020 ccagatcact cacccagaac ggctagccag acacactcca gggggcccac gcatcagagg 1080 aaatgtttac atccatccaa ccgctaaagt ggccccatca gctgtgctgg gccccaatgt 1140 ctccattggg aagggggtga ccataggcga gggtgtgcgt ctgcgagaga gcattgtcct 1200 ccatggagcc actttgcagg aacacacctg cgtccttcac agcattgtgg gctgggggag 1260 cactgtgggg cgctgggccc gtgtagaggg gactcccaat gaccccaatc cgaatgaccc 1320 ccgagctcgc atggacagtg agagcctctt caaagatgga aagctgcttc ctgccatcac 1380 tatcctgggc tgccgtgttc ggatccctgc cgaggtgctc atcttgaact caattgttct 1440 accacataag gagctaagtc gaagcttcac caaccaaatc atcctgtgag gatgctgcca 1500 aaaggccccc aggactcccg cccacactcc tttgggctgc tgcctgcctg gctagctctg 1560 tccagatagg acctgaggaa gccaccttgt agggagcctt gtgtgtggcc agggacacct 1620 ggcttccctc cctactgcca aataaacccc tatgaacctt g 1661 // |
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